Rh4CG091300

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005561
Physical Location & Seq
Reverse (-)
16481813 .. 16482250
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG091300.1

Sequence Viewer

Length: 438 bp
ATGAACTCCGCCACCAAAGTCACCGGCGACAACCGCTCTGCCCTACTCCAAGTCATCGGCATGGTCCCCGCCCTCGCCGACTCCGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCTCTTCGAGAAAGACACCGATCTCATCATCACCAACCGCCTCCAGCTCGGCCGGTTCGTCTACGTCGACCGCTTCGATTTCTACTCTCCGGTGCCGTGTGTCGCCGGAATCAGCACCATCGCTGGGCGCCACCCCTTTGTAGGTTCGCCTGAGCCTCTGGTGGCGGATTTCTCCAGGGAGAATATTGTCTGTTGGGGGAGTGAAGGACTCTGCTGCAAGGAAGAAAATGGCTACAATTGTTGTCGGAATTTCGAAGATTTCGGATTCAATCGGGATGTACCGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

145

Amino Acids

16.16

Weight (kDa)

4.53

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 1 - 105 6.2e-42 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 241, 276
AccBSI CCGCTC 1 cut(s) 36
AccI GTMKAC 2 cut(s) 210, 216
AciI CCGC 6 cut(s) 9, 34, 69, 187, 220, 314
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 397
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 4 cut(s) 90, 101, 273, 290
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 2 cut(s) 118, 196
AluI AGCT 2 cut(s) 118, 196
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 2 cut(s) 92, 199
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 397
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 64, 93
AsuHPI GGTGA 2 cut(s) 13, 172
AsuII TTCGAA 1 cut(s) 402
AvaII GGWCC 1 cut(s) 64
BanI GGYRCC 2 cut(s) 241, 276
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 151
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 64, 93
BmiI GGNNCC 3 cut(s) 66, 243, 278
BmrFI CCNGG 1 cut(s) 325
BpmI CTGGAG 2 cut(s) 176, 307
Bpu10I CCTNAGC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 100, 324
BsaWI WCCGGW 2 cut(s) 238, 430
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 101, 273, 290
Bse118I RCCGGY 2 cut(s) 23, 201
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 100, 324
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 4 cut(s) 90, 101, 273, 290
BseMII CTCAG 1 cut(s) 291
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 350
BseYI CCCAGC 1 cut(s) 272
Bsh1285I CGRYCG 2 cut(s) 202, 220
BshFI GGCC 2 cut(s) 94, 201
BshNI GGYRCC 2 cut(s) 241, 276
BsiEI CGRYCG 2 cut(s) 202, 220
BsiSI CCGG 5 cut(s) 24, 202, 239, 255, 431
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 4 cut(s) 90, 101, 273, 290
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 94, 201
Bsp119I TTCGAA 1 cut(s) 402
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 6 cut(s) 9, 34, 69, 187, 220, 314
BspANI GGCC 2 cut(s) 94, 201
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 66, 243, 278
BspT104I TTCGAA 1 cut(s) 402
BspT107I GGYRCC 2 cut(s) 241, 276
BsrBI CCGCTC 1 cut(s) 36
BsrFI RCCGGY 2 cut(s) 23, 201
BssAI RCCGGY 2 cut(s) 23, 201
BssECI CCNNGG 2 cut(s) 100, 324
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 430
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 169
BstMCI CGRYCG 2 cut(s) 202, 220
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 350
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 2 cut(s) 94, 201
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 430
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 2 cut(s) 23, 201
Cfr13I GGNCC 2 cut(s) 64, 93
Csp6I GTAC 1 cut(s) 428
CviAII CATG 1 cut(s) 61
CviJI RGCY 7 cut(s) 94, 105, 118, 196, 201, 304, 381
CviKI_1 RGCY 7 cut(s) 94, 105, 118, 196, 201, 304, 381
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 1 cut(s) 300
DinI GGCGCC 1 cut(s) 278
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 329
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 64
Eco52I CGGCCG 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 100
EgeI GGCGCC 1 cut(s) 278
EheI GGCGCC 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 1 cut(s) 64
FaiI YATR 1 cut(s) 62
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 2 cut(s) 210, 216
Fnu4HI GCNGC 1 cut(s) 364
Fsp4HI GCNGC 1 cut(s) 364
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 364
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 2 cut(s) 176, 307
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 2 cut(s) 94, 201
HapII CCGG 5 cut(s) 24, 202, 239, 255, 431
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 5 cut(s) 80, 125, 258, 357, 414
HpaII CCGG 5 cut(s) 24, 202, 239, 255, 431
HphI GGTGA 2 cut(s) 13, 172
Hpy166II GTNNAC 2 cut(s) 211, 217
Hpy188I TCNGA 4 cut(s) 85, 124, 396, 413
Hpy188III TCNNGA 2 cut(s) 157, 422
Hpy8I GTNNAC 2 cut(s) 211, 217
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 347
HpyCH4IV ACGT 3 cut(s) 111, 144, 213
HpyCH4V TGCA 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 3 cut(s) 111, 144, 213
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 277
KasI GGCGCC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 350
MaeII ACGT 3 cut(s) 111, 144, 213
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 171
MbiI CCGCTC 1 cut(s) 36
MboI GATC 1 cut(s) 169
MboII GAAGA 3 cut(s) 145, 383, 416
MfeI CAATTG 1 cut(s) 385
MluCI AATT 2 cut(s) 385, 397
Mly113I GGCGCC 1 cut(s) 277
MlyI GAGTC 3 cut(s) 74, 119, 351
MmeI TCCRAC 3 cut(s) 108, 147, 374
MnlI CCTC 6 cut(s) 83, 98, 140, 161, 200, 315
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 5 cut(s) 24, 202, 239, 255, 431
MspR9I CCNGG 1 cut(s) 325
MunI CAATTG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 33
NarI GGCGCC 1 cut(s) 277
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 3 cut(s) 66, 243, 278
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 402
PcsI WCGNNNNNNNCGW 4 cut(s) 81, 204, 213, 222
PfeI GAWTC 2 cut(s) 258, 414
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 3 cut(s) 74, 119, 351
PluTI GGCGCC 1 cut(s) 280
PpsI GAGTC 3 cut(s) 74, 119, 351
Psp6I CCWGG 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 3 cut(s) 66, 243, 278
PspPI GGNCC 2 cut(s) 64, 93
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 59
SalI GTCGAC 1 cut(s) 215
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 64, 93
SchI GAGTC 3 cut(s) 74, 119, 351
ScrFI CCNGG 1 cut(s) 325
SetI ASST 8 cut(s) 90, 114, 120, 143, 147, 198, 216, 295
SfoI GGCGCC 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 402
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 2 cut(s) 385, 397
SsiI CCGC 6 cut(s) 9, 34, 69, 187, 220, 314
SspDI GGCGCC 1 cut(s) 276
SspI AATATT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 100
TaiI ACGT 3 cut(s) 114, 147, 216
TaqI TCGA 4 cut(s) 156, 216, 225, 402
TasI AATT 2 cut(s) 385, 397
TfiI GAWTC 2 cut(s) 258, 414
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 397
XmiI GTMKAC 2 cut(s) 210, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.