Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457875.1

Orthogroup ID

OG0005561

Physical Location & Seq

Genomic Coordinates Reverse (-)

898 .. 1719

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457875.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggaaggtctcagggctgagttcggtgggccggagatcaaaccacatatcactgttgtggggtctattcgtatgacgtatgaagatgtgctcaacaaatttagatctctccattctaaaaattttcgtgcataccaagcaaaagttaatctagtggttaccagcaatttttatcaccaatgtgtttccctactcattgattcatcaacagaagtatcccatcagttagactgtataactcgcatatgcagtgcacatttgggtttcaataggtctggtaggccatatttgagtctcctttacgggagtctgacagaagaagagaggaatatagctctagaaaaagttagcactctagataaaaacatttccagcttgagcttcaccgtatctcaactcgcagtgtacaaaatcgactacagagatataactctcaaatcatgggaaaaagttgctgaatatgccctcccatttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase FBA_1

Protein Analysis

159

Amino Acids

18.11

Weight (kDa)

7.75

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005561)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111591
rosa_multiflora	Rmu_co8457875.1_g000001 Rmu_sc0001231.1_g000024 Rmu_sc0003693.1_g000012 Rmu_sc0017377.1_g000002 Rmu_sc0020611.1_g000015 Rmu_sc0021422.1_g000001 Rmu_sc0039657.1_g000001 Rmu_ssc0000049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113100 Rroxscaffold_2G00138830
rosa_rugosa	Rorug01G0262700 Rorug02G0248600 Rorug03G0200700 Rorug04G0203500
rosa_samantha	Rh2AG227800 Rh2AG521100 Rh2BG316300 Rh2CG506100 Rh2DG235900 Rh3CG369900 Rh4BG266200 Rh4CG091300 Rh5BG544200 Rh5CG567800 Rh5DG200900 Rh6AG031000 Rh7BG443100 Rh7CG445100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	98, 121
AfaI	GTAC	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	268
AleI	CACNNNNGTG	2 cut(s)	56, 180
AluBI	AGCT	3 cut(s)	335, 375, 381
AluI	AGCT	3 cut(s)	335, 375, 381
Alw21I	GWGCWC	2 cut(s)	93, 256
Alw26I	GTCTC	2 cut(s)	14, 299
Alw44I	GTGCAC	1 cut(s)	252
AoxI	GGCC	2 cut(s)	29, 281
ApaLI	GTGCAC	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	98, 121
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	167, 376
BaeGI	GKGCMC	1 cut(s)	256
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
Bbv12I	GWGCWC	2 cut(s)	93, 256
BccI	CCATC	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	14, 299
BfaI	CTAG	3 cut(s)	152, 338, 356
BfmI	CTRYAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	9, 25
BseSI	GKGCMC	1 cut(s)	256
BshFI	GGCC	2 cut(s)	31, 283
BsiHKAI	GWGCWC	2 cut(s)	93, 256
BsiSI	CCGG	1 cut(s)	32
BsmAI	GTCTC	2 cut(s)	14, 299
BsnI	GGCC	2 cut(s)	31, 283
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	93, 256
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	36, 104
BspANI	GGCC	2 cut(s)	31, 283
BspCNI	CTCAG	2 cut(s)	10, 24
BspTNI	GGTCTC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	405
BssMI	GATC	2 cut(s)	36, 104
Bst4CI	ACNGT	3 cut(s)	55, 233, 388
Bst6I	CTCTTC	1 cut(s)	315
BstAUI	TGTACA	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	11, 18
BstEII	GGTNACC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	39, 107
BstMAI	GTCTC	2 cut(s)	14, 299
BstMBI	GATC	2 cut(s)	36, 104
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 461
BstPI	GGTNACC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	31, 283
BtsI	GCAGTG	2 cut(s)	256, 408
BtsIMutI	CAGTG	3 cut(s)	51, 256, 408
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	441
CviJI	RGCY	6 cut(s)	17, 31, 283, 335, 375, 381
CviKI_1	RGCY	6 cut(s)	17, 31, 283, 335, 375, 381
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	11, 18
DpnI	GATC	2 cut(s)	38, 106
DpnII	GATC	2 cut(s)	36, 104
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	14
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
FaeI	CATG	1 cut(s)	444
FatI	CATG	1 cut(s)	440
FauNDI	CATATG	1 cut(s)	245
FspBI	CTAG	3 cut(s)	152, 338, 356
HaeIII	GGCC	2 cut(s)	31, 283
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	444
HinfI	GANTC	3 cut(s)	200, 292, 307
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	167, 376
Hpy166II	GTNNAC	2 cut(s)	254, 406
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	338, 356
Hpy8I	GTNNAC	2 cut(s)	254, 406
HpyCH4III	ACNGT	3 cut(s)	55, 233, 388
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	3 cut(s)	131, 249, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 461
HpyF3I	CTNAG	2 cut(s)	11, 18
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	36, 104
LpnPI	CCDG	4 cut(s)	45, 175, 261, 385
MaeI	CTAG	3 cut(s)	152, 338, 356
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	38, 106
MboI	GATC	2 cut(s)	36, 104
MboII	GAAGA	3 cut(s)	95, 329, 332
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	93, 256
MluCI	AATT	3 cut(s)	98, 121, 166
MlyI	GAGTC	2 cut(s)	301, 316
MnlI	CCTC	2 cut(s)	318, 476
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	56, 180
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	137, 461
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	2 cut(s)	36, 104
NlaIII	CATG	1 cut(s)	444
OliI	CACNNNNGTG	2 cut(s)	56, 180
PfeI	GAWTC	1 cut(s)	200
PleI	GAGTC	2 cut(s)	300, 315
PpsI	GAGTC	2 cut(s)	300, 315
PspEI	GGTNACC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	56, 180
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	36, 104
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	2 cut(s)	301, 316
SduI	GDGCHC	2 cut(s)	93, 256
SetI	ASST	6 cut(s)	10, 80, 275, 337, 377, 383
SfcI	CTRYAG	1 cut(s)	418
SmiMI	CAYNNNNRTG	2 cut(s)	56, 180
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	3 cut(s)	98, 121, 166
SspMI	CTAG	3 cut(s)	152, 338, 356
TaaI	ACNGT	3 cut(s)	55, 233, 388
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	414
TasI	AATT	3 cut(s)	98, 121, 166
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	58, 256, 408
TspDTI	ATGAA	3 cut(s)	96, 192, 464
TspRI	CASTG	3 cut(s)	58, 256, 408
VneI	GTGCAC	1 cut(s)	252
XapI	RAATTY	2 cut(s)	98, 121
XbaI	TCTAGA	2 cut(s)	337, 355
XspI	CTAG	3 cut(s)	152, 338, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.