Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020611.1

Orthogroup ID

OG0005561

Physical Location & Seq

Genomic Coordinates Reverse (-)

50242 .. 50682

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020611.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgaactccgccaccaaagtcaccggcgacaaccactctgccctactccaagtcatcggcatggtccccgccctcgccgacttcgacgacctctggcccaaccaagacttctacgtccatctctccgactccctcaactccacctacgtctccctctccgagaaagacaccgatctcatcatcaccaaccgcctccagctcggctggttcgtttacgtcgaccgcttcgatttctactctcctgtgccgtgtgtcgccggaatcagcaccatcgctagccgccacccctttgtaggttcgtctgagcctctggtggcggatttctccagagagaatattgtctgttgggggagtgaaggactctgctgcaaggaagaaaatggctacaattgttgccggaatttcgaagatttcggattcaatcgggatgtgccagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

146

Amino Acids

16.38

Weight (kDa)

4.39

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005561)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111591
rosa_multiflora	Rmu_co8457875.1_g000001 Rmu_sc0001231.1_g000024 Rmu_sc0003693.1_g000012 Rmu_sc0017377.1_g000002 Rmu_sc0020611.1_g000015 Rmu_sc0021422.1_g000001 Rmu_sc0039657.1_g000001 Rmu_ssc0000049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113100 Rroxscaffold_2G00138830
rosa_rugosa	Rorug01G0262700 Rorug02G0248600 Rorug03G0200700 Rorug04G0203500
rosa_samantha	Rh2AG227800 Rh2AG521100 Rh2BG316300 Rh2CG506100 Rh2DG235900 Rh3CG369900 Rh4BG266200 Rh4CG091300 Rh5BG544200 Rh5CG567800 Rh5DG200900 Rh6AG031000 Rh7BG443100 Rh7CG445100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	6 cut(s)	9, 69, 190, 223, 280, 317
AcsI	RAATTY	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	421
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	64, 96
AsuHPI	GGTGA	2 cut(s)	13, 175
AsuII	TTCGAA	1 cut(s)	405
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	2 cut(s)	126, 278
BceAI	ACGGC	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	276
BisI	GCNGC	2 cut(s)	280, 367
BlsI	GCNGC	2 cut(s)	281, 368
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	64, 96
BmiI	GGNNCC	1 cut(s)	66
BmtI	GCTAGC	1 cut(s)	279
BpmI	CTGGAG	2 cut(s)	179, 310
Bpu14I	TTCGAA	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	23
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	24, 258, 397
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	6 cut(s)	9, 69, 190, 223, 280, 317
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	66
BspOI	GCTAGC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	64, 96
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	97, 199, 204, 279, 307, 384
CviKI_1	RGCY	6 cut(s)	97, 199, 204, 279, 307, 384
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	64
FaiI	YATR	1 cut(s)	62
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	280, 367
Fsp4HI	GCNGC	2 cut(s)	280, 367
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	2 cut(s)	280, 367
GsuI	CTGGAG	2 cut(s)	179, 310
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	3 cut(s)	24, 258, 397
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	128, 261, 360, 417
HpaII	CCGG	3 cut(s)	24, 258, 397
HphI	GGTGA	2 cut(s)	13, 175
Hpy166II	GTNNAC	2 cut(s)	214, 220
Hpy188I	TCNGA	4 cut(s)	127, 160, 304, 416
Hpy188III	TCNNGA	2 cut(s)	327, 425
Hpy8I	GTNNAC	2 cut(s)	214, 220
Hpy99I	CGWCG	2 cut(s)	89, 221
HpyAV	CCTTC	1 cut(s)	350
HpyCH4IV	ACGT	3 cut(s)	114, 147, 216
HpyCH4V	TGCA	1 cut(s)	369
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	3 cut(s)	114, 147, 216
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	37, 79, 190, 209, 255, 271, 296, 340, 410
Lsp1109I	GCAGC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	3 cut(s)	114, 147, 216
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	386, 419
MfeI	CAATTG	1 cut(s)	388
MluCI	AATT	2 cut(s)	388, 400
MlyI	GAGTC	2 cut(s)	122, 354
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	83, 101, 143, 164, 203, 318
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	3 cut(s)	24, 258, 397
MunI	CAATTG	1 cut(s)	388
NdeII	GATC	1 cut(s)	172
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	4 cut(s)	81, 207, 216, 225
PfeI	GAWTC	2 cut(s)	261, 417
PkrI	GCNGC	2 cut(s)	281, 368
PleI	GAGTC	2 cut(s)	122, 354
PpsI	GAGTC	2 cut(s)	122, 354
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	64, 96
RseI	CAYNNNNRTG	1 cut(s)	59
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	2 cut(s)	280, 367
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	64, 96
SchI	GAGTC	2 cut(s)	122, 354
SetI	ASST	7 cut(s)	93, 117, 146, 150, 201, 219, 298
SfuI	TTCGAA	1 cut(s)	405
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	388, 400
SsiI	CCGC	6 cut(s)	9, 69, 190, 223, 280, 317
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	276
TaiI	ACGT	3 cut(s)	117, 150, 219
TaqI	TCGA	4 cut(s)	84, 219, 228, 405
TasI	AATT	2 cut(s)	388, 400
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	261, 417
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	366
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.