Rh2BG316300

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005561
Physical Location & Seq
Reverse (-)
37434176 .. 37434679
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG316300.1

Sequence Viewer

Length: 504 bp
ATGGCGTCACCCACTCCCAGAATCCTCCTCTGGCTCCTCCAGTCTATGAACTCCGCCACCAAAGTCACCAGCAACCACCGCTCTTCCCTGCTCCAAGTCATCGGCATAGTCCCCGCCCTCGCCGACTCCGACGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACCCCACCTACGTCTCCCTCTATGAGAAAGACACCGATCTCATCCTTGCCAACCGCCTCCAGCTCAGCCAGTTCGTCTACGTCGACTGCTTCGATTTCAACTCTCTGGTGCTGTGCGTCACCAGAATACCCCCCATCGCTGGGCGCCACCCCTTCGTCAGTTGCTGGAGCCTTTGGTGGAGGATTTCTCCGGGGAGAAGATTGTCTGTTGGGGGAGCGAAGGACTCTGCTGCAAGGAAGAAAATGGCTACAATTGTTGCAGGAATTTCGAAGATTTCTGATTCAATCGAGATGGTGTTGTTTCAGCCGTCCGTGAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

167

Amino Acids

18.63

Weight (kDa)

9.1

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 6 - 113 4.3e-38 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 2 cut(s) 258, 264
AciI CCGC 4 cut(s) 54, 79, 114, 235
AcsI RAATTY 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 5, 325
AfiI CCNNNNNNNGG 3 cut(s) 149, 320, 321
AgsI TTSAA 2 cut(s) 280, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 166, 244
AluI AGCT 2 cut(s) 166, 244
Alw26I GTCTC 1 cut(s) 199
AlwNI CAGNNNCTG 1 cut(s) 345
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 444
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 58, 292
AsuII TTCGAA 1 cut(s) 449
BanI GGYRCC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 323, 466
BceAI ACGGC 1 cut(s) 472
BcgI CGANNNNNNTGC 2 cut(s) 429, 463
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 199
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 1 cut(s) 411
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 3 cut(s) 35, 326, 350
BmrFI CCNGG 1 cut(s) 372
BplI GAGNNNNNCTC 2 cut(s) 352, 384
BpmI CTGGAG 3 cut(s) 23, 224, 367
Bpu1102I GCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 372
BsaHI GRCGYC 2 cut(s) 5, 325
BsaJI CCNNGG 2 cut(s) 148, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 320, 321
Bse1I ACTGG 2 cut(s) 40, 250
BseDI CCNNGG 2 cut(s) 148, 371
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 149, 320, 321
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 40, 250
BseRI GAGGAG 2 cut(s) 17, 26
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 320
BshFI GGCC 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 3 cut(s) 149, 320, 321
BsmAI GTCTC 1 cut(s) 199
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 449
Bsp143I GATC 1 cut(s) 217
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 4 cut(s) 54, 79, 114, 235
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 35, 326, 350
BspQI GCTCTTC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 324
BsrBI CCGCTC 1 cut(s) 81
BsrI ACTGG 2 cut(s) 40, 250
BssECI CCNNGG 2 cut(s) 148, 371
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 2 cut(s) 5, 325
BssT1I CCWWGG 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 88
BstACI GRCGYC 2 cut(s) 5, 325
BstBI TTCGAA 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 397
BsuRI GGCC 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 345
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 286
CviJI RGCY 9 cut(s) 34, 142, 153, 166, 244, 249, 351, 428, 487
CviKI_1 RGCY 9 cut(s) 34, 142, 153, 166, 244, 249, 351, 428, 487
DdeI CTNAG 1 cut(s) 245
DinI GGCGCC 1 cut(s) 326
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 148
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 199
FaiI YATR 3 cut(s) 47, 107, 204
FaqI GGGAC 1 cut(s) 95
FauI CCCGC 1 cut(s) 121
FblI GTMKAC 2 cut(s) 258, 264
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 411
GlaI GCGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 411
GsaI CCCAGC 1 cut(s) 324
GsuI CTGGAG 3 cut(s) 23, 224, 367
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 142
HapII CCGG 1 cut(s) 371
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 2 cut(s) 5, 325
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 5 cut(s) 21, 125, 173, 404, 461
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 58, 292
Hpy166II GTNNAC 2 cut(s) 259, 265
Hpy188I TCNGA 3 cut(s) 130, 172, 460
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 2 cut(s) 259, 265
Hpy99I CGWCG 2 cut(s) 134, 266
HpyAV CCTTC 2 cut(s) 343, 394
HpyCH4IV ACGT 3 cut(s) 159, 192, 261
HpyCH4V TGCA 2 cut(s) 413, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 3 cut(s) 159, 192, 261
Hsp92I GRCGYC 2 cut(s) 5, 325
HspAI GCGC 1 cut(s) 325
KasI GGCGCC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 4 cut(s) 39, 96, 348, 395
Lsp1109I GCAGC 1 cut(s) 397
MaeII ACGT 3 cut(s) 159, 192, 261
MaeIII GTNAC 3 cut(s) 6, 64, 298
MalI GATC 1 cut(s) 219
MbiI CCGCTC 1 cut(s) 81
MboI GATC 1 cut(s) 217
MboII GAAGA 4 cut(s) 75, 390, 430, 463
MfeI CAATTG 1 cut(s) 432
MluCI AATT 2 cut(s) 432, 444
Mly113I GGCGCC 1 cut(s) 325
MlyI GAGTC 3 cut(s) 119, 167, 398
MmeI TCCRAC 2 cut(s) 153, 195
MnlI CCTC 9 cut(s) 35, 38, 47, 128, 146, 188, 209, 248, 354
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 372
MunI CAATTG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 78
NarI GGCGCC 1 cut(s) 325
NciI CCSGG 1 cut(s) 372
NdeII GATC 1 cut(s) 217
NlaIV GGNNCC 3 cut(s) 35, 326, 350
NmuCI GTSAC 3 cut(s) 6, 64, 298
NspV TTCGAA 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 261, 270
PfeI GAWTC 2 cut(s) 21, 461
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 3 cut(s) 119, 167, 398
PluTI GGCGCC 1 cut(s) 328
PpsI GAGTC 3 cut(s) 119, 167, 398
PspFI CCCAGC 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 35, 326, 350
PspPI GGNCC 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 345
SalI GTCGAC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 88
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 3 cut(s) 119, 167, 398
ScrFI CCNGG 1 cut(s) 372
SetI ASST 7 cut(s) 138, 162, 168, 191, 195, 246, 264
SfoI GGCGCC 1 cut(s) 326
SfuI TTCGAA 1 cut(s) 449
Sse9I AATT 2 cut(s) 432, 444
SsiI CCGC 4 cut(s) 54, 79, 114, 235
SspDI GGCGCC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 3 cut(s) 162, 195, 264
TaqI TCGA 4 cut(s) 264, 273, 449, 468
TasI AATT 2 cut(s) 432, 444
TfiI GAWTC 2 cut(s) 21, 461
TseFI GTSAC 3 cut(s) 6, 64, 298
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 3 cut(s) 6, 64, 298
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 481
XapI RAATTY 1 cut(s) 444
XmiI GTMKAC 2 cut(s) 258, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.