Rh7BG443100

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005561
Physical Location & Seq
Forward (+)
51236179 .. 51239612
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG443100.1

Sequence Viewer

Length: 495 bp
ATGACGTCACCCACTCCCGGAATCCTCCTCTGGCTCCTCCAGTCCATGAACTCCGCCACCAAAGTCACCGGCGACCACCACTCTGCCCTGCTCCAAGTCATCGGCATAGTCCCCACCCTCGCCGACTCCGACGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACCGCCTCCAGCTCGGCCAGTTCGTCTACGTCGACCACTTCGATTTCGACTCTCCGGTGCCGCGCGTCGCCAGAATCCGCCCCATCGCTGGCCGCCACCCCTTCGTCGGTTCGCCGGAGCCTCTGGTGGCGGATTTCTCCAGGGAGAAGATTGTCTGTTGGGGGAGCGAAGGACTCTGCTGCAAGGAAGAAAATGGCTACAATTGTTGCCGGAATTTCGAAGATTTCGGATTCAATCGGGATGACTTGATTTCAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

164

Amino Acids

18.32

Weight (kDa)

4.81

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 5 - 121 2e-51 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 289
AccI GTMKAC 2 cut(s) 258, 264
AccII CGCG 2 cut(s) 295, 297
AciI CCGC 6 cut(s) 54, 235, 293, 310, 325, 362
AcoI YGGCCR 2 cut(s) 247, 322
AcsI RAATTY 2 cut(s) 445, 489
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 4 cut(s) 17, 149, 320, 338
AgsI TTSAA 2 cut(s) 466, 486
AjnI CCWGG 1 cut(s) 371
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 166, 244
AluI AGCT 2 cut(s) 166, 244
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 3 cut(s) 140, 247, 322
ApeKI GCWGC 1 cut(s) 411
ApoI RAATTY 2 cut(s) 445, 489
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 450
BanI GGYRCC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 398
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 199
BisI GCNGC 3 cut(s) 293, 325, 412
BlsI GCNGC 3 cut(s) 294, 326, 413
Bme1390I CCNGG 2 cut(s) 18, 373
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 3 cut(s) 35, 291, 351
BmrFI CCNGG 2 cut(s) 18, 373
BpmI CTGGAG 3 cut(s) 23, 224, 355
Bpu14I TTCGAA 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 148, 372
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 149, 320, 338
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 40, 250
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 148, 372
BseGI GGATG 2 cut(s) 222, 478
BseLI CCNNNNNNNGG 4 cut(s) 17, 149, 320, 338
BseNI ACTGG 2 cut(s) 40, 250
BseRI GAGGAG 2 cut(s) 17, 26
BseXI GCAGC 1 cut(s) 398
Bsh1236I CGCG 2 cut(s) 295, 297
BshFI GGCC 3 cut(s) 142, 249, 324
BshNI GGYRCC 1 cut(s) 289
BsiSI CCGG 5 cut(s) 18, 69, 287, 347, 442
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 4 cut(s) 17, 149, 320, 338
BsmAI GTCTC 1 cut(s) 199
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 142, 249, 324
Bsp119I TTCGAA 1 cut(s) 450
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 6 cut(s) 54, 235, 293, 310, 325, 362
BspANI GGCC 3 cut(s) 142, 249, 324
BspFNI CGCG 2 cut(s) 295, 297
BspLI GGNNCC 3 cut(s) 35, 291, 351
BspT104I TTCGAA 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 40, 250
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 148, 372
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 322
BstF5I GGATG 2 cut(s) 222, 478
BstFNI CGCG 2 cut(s) 295, 297
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 16, 371
BstUI CGCG 2 cut(s) 295, 297
BstV1I GCAGC 1 cut(s) 398
BsuRI GGCC 3 cut(s) 142, 249, 324
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 2 cut(s) 222, 478
Cac8I GCNNGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 286
CviAII CATG 1 cut(s) 46
CviJI RGCY 9 cut(s) 34, 142, 153, 166, 244, 249, 324, 352, 429
CviKI_1 RGCY 9 cut(s) 34, 142, 153, 166, 244, 249, 324, 352, 429
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 2 cut(s) 247, 322
EciI GGCGGA 3 cut(s) 43, 299, 377
Eco130I CCWWGG 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 47, 107
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 45
FblI GTMKAC 2 cut(s) 258, 264
Fnu4HI GCNGC 3 cut(s) 293, 325, 412
FokI GGATG 2 cut(s) 209, 485
Fsp4HI GCNGC 3 cut(s) 293, 325, 412
GlaI GCGC 1 cut(s) 296
GluI GCNGC 3 cut(s) 293, 325, 412
GsuI CTGGAG 3 cut(s) 23, 224, 355
HaeIII GGCC 3 cut(s) 142, 249, 324
HapII CCGG 5 cut(s) 18, 69, 287, 347, 442
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 7 cut(s) 21, 125, 173, 281, 306, 405, 462
HpaII CCGG 5 cut(s) 18, 69, 287, 347, 442
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 259, 265
Hpy188I TCNGA 4 cut(s) 130, 172, 205, 461
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 2 cut(s) 259, 265
Hpy99I CGWCG 4 cut(s) 134, 266, 302, 341
HpyAV CCTTC 2 cut(s) 343, 395
HpyCH4IV ACGT 4 cut(s) 5, 159, 192, 261
HpyCH4V TGCA 1 cut(s) 414
HpySE526I ACGT 4 cut(s) 5, 159, 192, 261
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 4 cut(s) 39, 96, 349, 396
Lsp1109I GCAGC 1 cut(s) 398
MaeII ACGT 4 cut(s) 5, 159, 192, 261
MaeIII GTNAC 2 cut(s) 6, 64
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 391, 431, 464
MfeI CAATTG 1 cut(s) 433
MluCI AATT 3 cut(s) 433, 445, 489
MlyI GAGTC 4 cut(s) 119, 167, 275, 399
MmeI TCCRAC 2 cut(s) 153, 195
MspI CCGG 5 cut(s) 18, 69, 287, 347, 442
MspR9I CCNGG 2 cut(s) 18, 373
MunI CAATTG 1 cut(s) 433
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 2 cut(s) 295, 297
NciI CCSGG 1 cut(s) 18
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 3 cut(s) 35, 291, 351
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 6, 64
NspV TTCGAA 1 cut(s) 450
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 252, 261, 270
PfeI GAWTC 3 cut(s) 21, 306, 462
PfoI TCCNGGA 1 cut(s) 16
PkrI GCNGC 3 cut(s) 294, 326, 413
PleI GAGTC 4 cut(s) 119, 167, 275, 399
PpsI GAGTC 4 cut(s) 119, 167, 275, 399
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 3 cut(s) 35, 291, 351
PspPI GGNCC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 263
SatI GCNGC 3 cut(s) 293, 325, 412
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 4 cut(s) 119, 167, 275, 399
ScrFI CCNGG 2 cut(s) 18, 373
SetI ASST 8 cut(s) 8, 138, 162, 168, 191, 195, 246, 264
SfuI TTCGAA 1 cut(s) 450
SgrAI CRCCGGYG 1 cut(s) 68
Sse9I AATT 3 cut(s) 433, 445, 489
SsiI CCGC 6 cut(s) 54, 235, 293, 310, 325, 362
StyD4I CCNGG 2 cut(s) 16, 371
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 4 cut(s) 8, 162, 195, 264
TaqI TCGA 4 cut(s) 264, 273, 279, 450
TasI AATT 3 cut(s) 433, 445, 489
TauI GCSGC 2 cut(s) 295, 327
TfiI GAWTC 3 cut(s) 21, 306, 462
TseFI GTSAC 2 cut(s) 6, 64
TseI GCWGC 1 cut(s) 411
Tsp45I GTSAC 2 cut(s) 6, 64
TspDTI ATGAA 1 cut(s) 62
XapI RAATTY 2 cut(s) 445, 489
XmiI GTMKAC 2 cut(s) 258, 264
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.