Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003693.1

Orthogroup ID

OG0005561

Physical Location & Seq

Genomic Coordinates Reverse (-)

55149 .. 55598

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003693.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgtcctccacattccaaatcccaaacctctctctctctgattctctcacccccaatggcgtcacccactcccgtctcctccagtccatgaactcggccaccaaagtcaccggcgactaccgctctgccctattccaagtcatcagcatagtccccgccctcgccgactctgacaacctctggcccaaccaaggcttctacgtccaactctccgactccctcaactccacctacgtctccctctccaagaaagacaccaatctcatcctcgccaaccgtctccagcatccagctcggatagttcgtctatgtcgactgcttcgatttagactttcccgtgccgcgcgtcgccagaatcagccccatcgctggccaccacccgttcatcggttcgccggagcctctggtggcagatttctccagggacaagactgtttgttgggggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

149

Amino Acids

16.65

Weight (kDa)

10.81

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005561)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111591
rosa_multiflora	Rmu_co8457875.1_g000001 Rmu_sc0001231.1_g000024 Rmu_sc0003693.1_g000012 Rmu_sc0017377.1_g000002 Rmu_sc0020611.1_g000015 Rmu_sc0021422.1_g000001 Rmu_sc0039657.1_g000001 Rmu_ssc0000049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113100 Rroxscaffold_2G00138830
rosa_rugosa	Rorug01G0262700 Rorug02G0248600 Rorug03G0200700 Rorug04G0203500
rosa_samantha	Rh2AG227800 Rh2AG521100 Rh2BG316300 Rh2CG506100 Rh2DG235900 Rh3CG369900 Rh4BG266200 Rh4CG091300 Rh5BG544200 Rh5CG567800 Rh5DG200900 Rh6AG031000 Rh7BG443100 Rh7CG445100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	2 cut(s)	344, 346
AciI	CCGC	3 cut(s)	121, 156, 342
AcoI	YGGCCR	2 cut(s)	96, 371
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	3 cut(s)	191, 369, 387
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw26I	GTCTC	3 cut(s)	80, 241, 284
AoxI	GGCC	3 cut(s)	96, 182, 371
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	3 cut(s)	40, 55, 100
BalI	TGGCCA	1 cut(s)	373
BccI	CCATC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	1 cut(s)	422
BcoDI	GTCTC	3 cut(s)	80, 241, 284
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	295
BpmI	CTGGAG	3 cut(s)	65, 266, 404
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	190, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 369, 387
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	190, 421
BseGI	GGATG	2 cut(s)	264, 286
BseLI	CCNNNNNNNGG	3 cut(s)	191, 369, 387
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	68
Bsh1236I	CGCG	2 cut(s)	344, 346
BshFI	GGCC	3 cut(s)	98, 184, 373
BsiSI	CCGG	2 cut(s)	111, 396
BslFI	GGGAC	2 cut(s)	137, 438
BslI	CCNNNNNNNGG	3 cut(s)	191, 369, 387
BsmAI	GTCTC	3 cut(s)	80, 241, 284
BsmBI	CGTCTC	3 cut(s)	80, 241, 284
BsmFI	GGGAC	2 cut(s)	137, 438
BsnI	GGCC	3 cut(s)	98, 184, 373
BspACI	CCGC	3 cut(s)	121, 156, 342
BspANI	GGCC	3 cut(s)	98, 184, 373
BspFNI	CGCG	2 cut(s)	344, 346
BspLI	GGNNCC	1 cut(s)	400
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	190, 421
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	278, 434
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	264, 286
BstFNI	CGCG	2 cut(s)	344, 346
BstHHI	GCGC	1 cut(s)	346
BstMAI	GTCTC	3 cut(s)	80, 241, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstUI	CGCG	2 cut(s)	344, 346
BsuRI	GGCC	3 cut(s)	98, 184, 373
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	264, 286
Cac8I	GCNNGC	1 cut(s)	371
CfoI	GCGC	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	2 cut(s)	49, 335
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	98, 184, 195, 293, 361, 373, 401
CviKI_1	RGCY	7 cut(s)	98, 184, 195, 293, 361, 373, 401
EaeI	YGGCCR	2 cut(s)	96, 371
Eco130I	CCWWGG	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	3 cut(s)	80, 241, 284
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	89, 149, 310
FaqI	GGGAC	2 cut(s)	137, 438
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	251, 273
Fsp4HI	GCNGC	1 cut(s)	342
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	342
GsuI	CTGGAG	3 cut(s)	65, 266, 404
HaeIII	GGCC	3 cut(s)	98, 184, 373
HapII	CCGG	2 cut(s)	111, 396
HgaI	GACGC	2 cut(s)	49, 335
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HinfI	GANTC	4 cut(s)	41, 167, 215, 355
HpaII	CCGG	2 cut(s)	111, 396
HphI	GGTGA	3 cut(s)	40, 55, 100
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	4 cut(s)	40, 172, 214, 297
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	351
HpyCH4III	ACNGT	2 cut(s)	278, 434
HpyCH4IV	ACGT	2 cut(s)	201, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	201, 234
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	398
LweI	GCATC	1 cut(s)	295
MaeII	ACGT	2 cut(s)	201, 234
MaeIII	GTNAC	2 cut(s)	61, 106
MbiI	CCGCTC	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	373
MluNI	TGGCCA	1 cut(s)	373
MlyI	GAGTC	2 cut(s)	161, 209
MmeI	TCCRAC	2 cut(s)	229, 237
MnlI	CCTC	9 cut(s)	16, 38, 89, 170, 188, 230, 251, 278, 412
Mox20I	TGGCCA	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	373
Msp20I	TGGCCA	1 cut(s)	373
MspI	CCGG	2 cut(s)	111, 396
MspR9I	CCNGG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	2 cut(s)	344, 346
MwoI	GCNNNNNNNGC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	2 cut(s)	61, 106
PcsI	WCGNNNNNNNCGW	3 cut(s)	301, 310, 319
PfeI	GAWTC	2 cut(s)	41, 355
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	2 cut(s)	161, 209
PpsI	GAGTC	2 cut(s)	161, 209
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	312
SatI	GCNGC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	2 cut(s)	161, 209
ScrFI	CCNGG	1 cut(s)	422
SetI	ASST	6 cut(s)	30, 180, 204, 233, 237, 295
SfaNI	GCATC	1 cut(s)	295
SgrAI	CRCCGGYG	1 cut(s)	110
SsiI	CCGC	3 cut(s)	121, 156, 342
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	278, 434
TaiI	ACGT	2 cut(s)	204, 237
TaqI	TCGA	2 cut(s)	313, 322
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	41, 355
TseFI	GTSAC	2 cut(s)	61, 106
Tsp45I	GTSAC	2 cut(s)	61, 106
TspDTI	ATGAA	2 cut(s)	104, 374
XmiI	GTMKAC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.