Rmu_sc0017377.1_g000002

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017377.1
OG0005561
Physical Location & Seq
Forward (+)
7536 .. 7847
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017377.1_g000002.1.cds

Sequence Viewer

Length: 312 bp
atggcgtcacccactcccagaatcctcctccggctcctccagtccatgaactcagccactaaagtcaccggcgaccaccgatctgccctgctccaagtcatcggcatagtcctcgccctcgccgactccgacgacctctggcccaaccaaggcttctatgtccggctctccgactccctcgactccacctacgtctctctcttcgagaaagacaccgatctcatcctcgccaaccgcctccagctcggccaattcgtctacgtcgactttttctttgatcactttctcttcggtcaaacgggtcgggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

103

Amino Acids

11.61

Weight (kDa)

5.02

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 258, 264
AciI CCGC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 2 cut(s) 140, 247
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BclI TGATCA 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 35
BpmI CTGGAG 2 cut(s) 23, 224
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 2 cut(s) 17, 26
BshFI GGCC 2 cut(s) 142, 249
BsiSI CCGG 3 cut(s) 31, 69, 163
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 199
BsmBI CGTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 142, 249
Bsp143I GATC 3 cut(s) 80, 217, 277
BspACI CCGC 1 cut(s) 235
BspANI GGCC 2 cut(s) 142, 249
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 3 cut(s) 80, 217, 277
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 206, 293
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 3 cut(s) 83, 220, 280
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 3 cut(s) 80, 217, 277
BsuRI GGCC 2 cut(s) 142, 249
BtsCI GGATG 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 141
CviAII CATG 1 cut(s) 46
CviJI RGCY 7 cut(s) 34, 56, 142, 153, 166, 244, 249
CviKI_1 RGCY 7 cut(s) 34, 56, 142, 153, 166, 244, 249
DdeI CTNAG 1 cut(s) 52
DpnI GATC 3 cut(s) 82, 219, 279
DpnII GATC 3 cut(s) 80, 217, 277
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 206, 293
EarI CTCTTC 2 cut(s) 206, 293
Eco130I CCWWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 47, 107, 159, 310
FatI CATG 1 cut(s) 45
FbaI TGATCA 1 cut(s) 277
FblI GTMKAC 2 cut(s) 258, 264
FokI GGATG 1 cut(s) 209
GsuI CTGGAG 2 cut(s) 23, 224
HaeIII GGCC 2 cut(s) 142, 249
HapII CCGG 3 cut(s) 31, 69, 163
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 4 cut(s) 21, 125, 173, 182
HpaII CCGG 3 cut(s) 31, 69, 163
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 259, 265
Hpy188I TCNGA 2 cut(s) 130, 172
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 2 cut(s) 259, 265
Hpy99I CGWCG 2 cut(s) 134, 266
HpyCH4IV ACGT 2 cut(s) 192, 261
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 2 cut(s) 192, 261
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 3 cut(s) 80, 217, 277
LmnI GCTCC 2 cut(s) 39, 96
LpnPI CCDG 8 cut(s) 31, 44, 53, 82, 101, 124, 176, 254
MaeII ACGT 2 cut(s) 192, 261
MaeIII GTNAC 2 cut(s) 6, 64
MalI GATC 3 cut(s) 82, 219, 279
MboI GATC 3 cut(s) 80, 217, 277
MboII GAAGA 2 cut(s) 193, 280
MluCI AATT 1 cut(s) 251
MlyI GAGTC 3 cut(s) 119, 167, 176
MmeI TCCRAC 2 cut(s) 153, 195
MnlI CCTC 9 cut(s) 35, 38, 47, 122, 128, 146, 188, 236, 248
MspI CCGG 3 cut(s) 31, 69, 163
NdeII GATC 3 cut(s) 80, 217, 277
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 6, 64
PcsI WCGNNNNNNNCGW 4 cut(s) 120, 126, 252, 261
PfeI GAWTC 1 cut(s) 21
PleI GAGTC 3 cut(s) 119, 167, 176
PpsI GAGTC 3 cut(s) 119, 167, 176
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 263
Sau3AI GATC 3 cut(s) 80, 217, 277
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 3 cut(s) 119, 167, 176
SetI ASST 5 cut(s) 138, 191, 195, 246, 264
SgrAI CRCCGGYG 1 cut(s) 68
Sse9I AATT 1 cut(s) 251
SsiI CCGC 1 cut(s) 235
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 2 cut(s) 195, 264
TaqI TCGA 3 cut(s) 180, 204, 264
TaqII GACCGA 1 cut(s) 281
TasI AATT 1 cut(s) 251
TfiI GAWTC 1 cut(s) 21
TseFI GTSAC 2 cut(s) 6, 64
Tsp45I GTSAC 2 cut(s) 6, 64
TspDTI ATGAA 1 cut(s) 62
XmiI GTMKAC 2 cut(s) 258, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.