Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039657.1

Orthogroup ID

OG0005561

Physical Location & Seq

Genomic Coordinates Reverse (-)

300 .. 675

Gene Structure 376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039657.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgaactccgccactaaagtcaccggcgaccaccgatctgccctgctccaagtcatctgcatagtccccgccctcgccgactccgacgacctctggcccaaccaaggcttctatgttcggctctccaactccacctacgtctccctctccgagaaagacaccgatctcatcctcgccaacctcctccagctcggccagtatgagcggcgtgacggggctgagcaccagcgccgggaaatcgagaacgctccccgacaaaatcttctgttttcccggccagaatccggagttgttgttgctgttgttattgttggaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

106

Amino Acids

11.76

Weight (kDa)

5.23

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005561)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111591
rosa_multiflora	Rmu_co8457875.1_g000001 Rmu_sc0001231.1_g000024 Rmu_sc0003693.1_g000012 Rmu_sc0017377.1_g000002 Rmu_sc0020611.1_g000015 Rmu_sc0021422.1_g000001 Rmu_sc0039657.1_g000001 Rmu_ssc0000049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113100 Rroxscaffold_2G00138830
rosa_rugosa	Rorug01G0262700 Rorug02G0248600 Rorug03G0200700 Rorug04G0203500
rosa_samantha	Rh2AG227800 Rh2AG521100 Rh2BG316300 Rh2CG506100 Rh2DG235900 Rh3CG369900 Rh4BG266200 Rh4CG091300 Rh5BG544200 Rh5CG567800 Rh5DG200900 Rh6AG031000 Rh7BG443100 Rh7CG445100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccIII	TCCGGA	1 cut(s)	284
AciI	CCGC	3 cut(s)	9, 69, 205
AcoI	YGGCCR	2 cut(s)	193, 275
AcsI	RAATTY	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	104, 232, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	145
Aor13HI	TCCGGA	1 cut(s)	284
AoxI	GGCC	3 cut(s)	95, 193, 275
ApoI	RAATTY	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	2 cut(s)	233, 274
AsuHPI	GGTGA	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	225
BcnI	CCSGG	2 cut(s)	233, 274
BcoDI	GTCTC	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	233, 274
BmgT120I	GGNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	233, 274
BpmI	CTGGAG	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuMI	CCSGG	2 cut(s)	233, 274
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 232, 284
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	196
BseAI	TCCGGA	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	104, 232, 284
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	97, 195, 277
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	4 cut(s)	24, 232, 274, 285
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	104, 232, 284
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	97, 195, 277
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	35, 163
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	3 cut(s)	9, 69, 205
BspANI	GGCC	3 cut(s)	97, 195, 277
BspCNI	CTCAG	1 cut(s)	211
BspEI	TCCGGA	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	35, 163
BssT1I	CCWWGG	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	38, 166
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	35, 163
BstSCI	CCNGG	2 cut(s)	231, 272
BsuRI	GGCC	3 cut(s)	97, 195, 277
BtsCI	GGATG	1 cut(s)	168
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	96
CviJI	RGCY	7 cut(s)	97, 108, 121, 190, 195, 218, 277
CviKI_1	RGCY	7 cut(s)	97, 108, 121, 190, 195, 218, 277
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	37, 165
DpnII	GATC	2 cut(s)	35, 163
EaeI	YGGCCR	2 cut(s)	193, 275
Eco130I	CCWWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	145
FaiI	YATR	3 cut(s)	62, 114, 201
FaqI	GGGAC	1 cut(s)	50
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	206
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	97, 195, 277
HapII	CCGG	4 cut(s)	24, 232, 274, 285
HhaI	GCGC	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	80, 281
HpaII	CCGG	4 cut(s)	24, 232, 274, 285
HphI	GGTGA	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	85, 151
Hpy188III	TCNNGA	2 cut(s)	241, 285
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	138
HspAI	GCGC	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	35, 163
LmnI	GCTCC	2 cut(s)	51, 253
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	19, 209
MalI	GATC	2 cut(s)	37, 165
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	35, 163
MboII	GAAGA	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	3 cut(s)	108, 150, 292
MnlI	CCTC	6 cut(s)	83, 101, 155, 182, 191, 194
MroI	TCCGGA	1 cut(s)	284
MseI	TTAA	1 cut(s)	319
MspI	CCGG	4 cut(s)	24, 232, 274, 285
MspR9I	CCNGG	2 cut(s)	233, 274
NciI	CCSGG	2 cut(s)	233, 274
NdeII	GATC	2 cut(s)	35, 163
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	19, 209
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	319
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	35, 163
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	233, 274
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	5 cut(s)	93, 137, 141, 183, 192
SgrAI	CRCCGGYG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	3 cut(s)	9, 69, 205
StyD4I	CCNGG	2 cut(s)	231, 272
StyI	CCWWGG	1 cut(s)	103
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	315
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	19, 209
Tsp45I	GTSAC	2 cut(s)	19, 209
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.