Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005561

Physical Location & Seq

Genomic Coordinates Reverse (-)

24203855 .. 24212541

Gene Structure 8687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG227800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGTCACCCACTCCCGGAATCCTCCTCCGACTCCTTCAGTCCATGAACTCGGCCACTAAAGTCACCGGCGACCACCGATCTGCCCTGCTCCAAGTCATCGGCATAGTCCCTGCCCTCGCCGACTCCGACGACCTCTGGCCCAACCAAGGCTTCTATGTCCGGCTCTCCGACTCCCTCGACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACCGCCTCCAGCTCGGCCAGTTCGTCTACGTCGACTTTTTCTTTGATCACTTTCTCTTCGGTCAAACGGGTCTGGTGAACTTTTCTCCACTCACGCACTTTCCATCCGGTCCTTCCATAGTGGACAGAGAATTGCATTCATATTCAATATGGGCCATCCCACCGAATGATGTGTCTTTTAGGATCAAGAAGTTGATGGAAGGTCTCAGGGCTGAGTTCGGTGGGCCGGAGATCAAACCACATATCACTGTTGTGGGGTCTATTCGTATGACGTATGAAGATGTGCTCAACAAATTCAGATCTCTTCATTCTAAATATTTTCGTGCATACCAAGCAAAAGTTAATCTGGTGGTTACTAGCAATTTTTATCACCAATGTGTTTCCCTACTCATTGATTCATCAACAGAAGTATCCCATCAGTTAGACTGTACAACTCGCATATGCACTGCACATTGGGGTTTCAATAGGGGTGGTAGGCCATATTTGAGTCTCCTTTACGGAAATCTAACAGAAGAAGAGAGGAAAATAGCTCTAGAAAAAGTTAGTTCTCTAGATAAAAACATTTCCAGCTTGAGTTTCACCATATCTCAACTCGCAGTGTACAAAATCGACTACAGAGATATAACTCTCAAATCATGGGAAAAAATTGCTGAATATGCCCTCCCATTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase FBA_1

Protein Analysis

301

Amino Acids

34.08

Weight (kDa)

6.55

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF936	PF06075	5 - 89	4.3e-38	Plant protein of unknown function (DUF936)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005561)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111591
rosa_multiflora	Rmu_co8457875.1_g000001 Rmu_sc0001231.1_g000024 Rmu_sc0003693.1_g000012 Rmu_sc0017377.1_g000002 Rmu_sc0020611.1_g000015 Rmu_sc0021422.1_g000001 Rmu_sc0039657.1_g000001 Rmu_ssc0000049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113100 Rroxscaffold_2G00138830
rosa_rugosa	Rorug01G0262700 Rorug02G0248600 Rorug03G0200700 Rorug04G0203500
rosa_samantha	Rh2AG227800 Rh2AG521100 Rh2BG316300 Rh2CG506100 Rh2DG235900 Rh3CG369900 Rh4BG266200 Rh4CG091300 Rh5BG544200 Rh5CG567800 Rh5DG200900 Rh6AG031000 Rh7BG443100 Rh7CG445100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	258, 264
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	2 cut(s)	54, 247
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	661, 833
AfiI	CCNNNNNNNGG	2 cut(s)	17, 149
AgsI	TTSAA	2 cut(s)	378, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AleI	CACNNNNGTG	2 cut(s)	482, 606
AluBI	AGCT	3 cut(s)	244, 761, 801
AluI	AGCT	3 cut(s)	244, 761, 801
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	3 cut(s)	199, 440, 725
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	6 cut(s)	54, 140, 247, 384, 455, 707
ApoI	RAATTY	1 cut(s)	524
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 389, 421
AspS9I	GGNCC	4 cut(s)	141, 341, 384, 455
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	4 cut(s)	58, 319, 593, 802
AvaII	GGWCC	1 cut(s)	341
BaeI	ACNNNNGTAYC	2 cut(s)	624, 657
Bbv12I	GWGCWC	1 cut(s)	519
BccI	CCATC	4 cut(s)	343, 395, 421, 654
BciVI	GTATCC	1 cut(s)	652
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	199, 440, 725
BfaI	CTAG	3 cut(s)	588, 764, 782
BfmI	CTRYAG	1 cut(s)	844
BfuI	GTATCC	1 cut(s)	652
BglII	AGATCT	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	4 cut(s)	141, 341, 384, 455
BmrFI	CCNGG	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	823
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 149
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	3 cut(s)	222, 335, 387
BseLI	CCNNNNNNNGG	2 cut(s)	17, 149
BseMII	CTCAG	2 cut(s)	435, 451
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	663
BshFI	GGCC	6 cut(s)	56, 142, 249, 386, 457, 709
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	5 cut(s)	18, 69, 163, 339, 458
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	17, 149
BsmAI	GTCTC	3 cut(s)	199, 440, 725
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	6 cut(s)	56, 142, 249, 386, 457, 709
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp1407I	TGTACA	2 cut(s)	659, 831
Bsp143I	GATC	6 cut(s)	80, 217, 277, 414, 462, 530
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	6 cut(s)	56, 142, 249, 386, 457, 709
BspCNI	CTCAG	2 cut(s)	436, 450
BspPI	GGATC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	2 cut(s)	659, 831
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	6 cut(s)	80, 217, 277, 414, 462, 530
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	481, 659
Bst6I	CTCTTC	3 cut(s)	293, 540, 741
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	2 cut(s)	659, 831
BstDEI	CTNAG	2 cut(s)	437, 444
BstF5I	GGATG	3 cut(s)	222, 335, 387
BstKTI	GATC	6 cut(s)	83, 220, 280, 417, 465, 533
BstMAI	GTCTC	3 cut(s)	199, 440, 725
BstMBI	GATC	6 cut(s)	80, 217, 277, 414, 462, 530
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 887
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	844
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	6 cut(s)	56, 142, 249, 386, 457, 709
BtsCI	GGATG	3 cut(s)	222, 335, 387
BtsI	GCAGTG	2 cut(s)	675, 834
BtsIMutI	CAGTG	3 cut(s)	477, 675, 834
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	141, 341, 384, 455
Csp6I	GTAC	2 cut(s)	660, 832
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	2 cut(s)	46, 867
CviQI	GTAC	2 cut(s)	660, 832
DdeI	CTNAG	2 cut(s)	437, 444
DpnI	GATC	6 cut(s)	82, 219, 279, 416, 464, 532
DpnII	GATC	6 cut(s)	80, 217, 277, 414, 462, 530
EaeI	YGGCCR	2 cut(s)	54, 247
Eam1104I	CTCTTC	3 cut(s)	293, 540, 741
EarI	CTCTTC	3 cut(s)	293, 540, 741
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	2 cut(s)	49, 870
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	45, 866
FauNDI	CATATG	1 cut(s)	671
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	2 cut(s)	258, 264
FokI	GGATG	3 cut(s)	209, 322, 374
FspBI	CTAG	3 cut(s)	588, 764, 782
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	6 cut(s)	56, 142, 249, 386, 457, 709
HapII	CCGG	5 cut(s)	18, 69, 163, 339, 458
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	49, 870
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	7 cut(s)	21, 33, 125, 173, 182, 626, 718
HpaII	CCGG	5 cut(s)	18, 69, 163, 339, 458
HphI	GGTGA	4 cut(s)	58, 319, 593, 802
Hpy166II	GTNNAC	5 cut(s)	259, 265, 310, 355, 832
Hpy188I	TCNGA	5 cut(s)	32, 130, 172, 205, 530
Hpy188III	TCNNGA	3 cut(s)	418, 764, 782
Hpy8I	GTNNAC	5 cut(s)	259, 265, 310, 355, 832
Hpy99I	CGWCG	2 cut(s)	134, 266
HpyAV	CCTTC	3 cut(s)	47, 354, 425
HpyCH4III	ACNGT	2 cut(s)	481, 659
HpyCH4IV	ACGT	3 cut(s)	192, 261, 503
HpyCH4V	TGCA	4 cut(s)	367, 557, 675, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 887
HpyF3I	CTNAG	2 cut(s)	437, 444
HpySE526I	ACGT	3 cut(s)	192, 261, 503
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	49, 870
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	6 cut(s)	80, 217, 277, 414, 462, 530
LmnI	GCTCC	1 cut(s)	96
MaeI	CTAG	3 cut(s)	588, 764, 782
MaeII	ACGT	3 cut(s)	192, 261, 503
MaeIII	GTNAC	3 cut(s)	6, 64, 583
MalI	GATC	6 cut(s)	82, 219, 279, 416, 464, 532
MboI	GATC	6 cut(s)	80, 217, 277, 414, 462, 530
MboII	GAAGA	5 cut(s)	280, 521, 527, 755, 758
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	4 cut(s)	362, 524, 592, 876
MlyI	GAGTC	5 cut(s)	27, 119, 167, 176, 727
MmeI	TCCRAC	3 cut(s)	55, 153, 195
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	2 cut(s)	482, 606
MspI	CCGG	5 cut(s)	18, 69, 163, 339, 458
MspR9I	CCNGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	563, 887
NciI	CCSGG	1 cut(s)	18
NdeI	CATATG	1 cut(s)	671
NdeII	GATC	6 cut(s)	80, 217, 277, 414, 462, 530
NlaIII	CATG	2 cut(s)	49, 870
NmeAIII	GCCGAG	2 cut(s)	32, 225
NmuCI	GTSAC	2 cut(s)	6, 64
OliI	CACNNNNGTG	2 cut(s)	482, 606
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 252, 261
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	21, 626
PfoI	TCCNGGA	1 cut(s)	16
PleI	GAGTC	5 cut(s)	27, 119, 167, 176, 726
PpsI	GAGTC	5 cut(s)	27, 119, 167, 176, 726
PspPI	GGNCC	4 cut(s)	141, 341, 384, 455
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	2 cut(s)	661, 833
RsaNI	GTAC	2 cut(s)	660, 832
RseI	CAYNNNNRTG	2 cut(s)	482, 606
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	573
Sau3AI	GATC	6 cut(s)	80, 217, 277, 414, 462, 530
Sau96I	GGNCC	4 cut(s)	141, 341, 384, 455
SchI	GAGTC	5 cut(s)	27, 119, 167, 176, 727
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	9 cut(s)	138, 191, 195, 246, 264, 436, 506, 763, 803
SfcI	CTRYAG	1 cut(s)	844
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	482, 606
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
Sse9I	AATT	4 cut(s)	362, 524, 592, 876
SsiI	CCGC	1 cut(s)	235
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	3 cut(s)	588, 764, 782
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	481, 659
TaiI	ACGT	3 cut(s)	195, 264, 506
TaqI	TCGA	3 cut(s)	180, 264, 840
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	4 cut(s)	362, 524, 592, 876
TatI	WGTACW	2 cut(s)	659, 831
TfiI	GAWTC	2 cut(s)	21, 626
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	3 cut(s)	484, 682, 834
TseFI	GTSAC	2 cut(s)	6, 64
Tsp45I	GTSAC	2 cut(s)	6, 64
TspDTI	ATGAA	6 cut(s)	62, 360, 522, 527, 618, 890
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	484, 682, 834
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	2 cut(s)	763, 781
XmiI	GTMKAC	2 cut(s)	258, 264
XspI	CTAG	3 cut(s)	588, 764, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.