Rmu_ssc0000049.1_g000002

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000049.1
OG0005561
Physical Location & Seq
Forward (+)
1584 .. 1952
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000049.1_g000002.1.cds

Sequence Viewer

Length: 369 bp
atgaacttcgccaccaaagtcaccggcaacaacggctctgccctgctccaagtcatcggcatagtccccgccctcgccgactctgacgacttctggcccaaccaaggcttctacgtccagctctctgactccctcaactccacctacgtctccatctccgagaaagacaccgatctcatcctcaccaaccgcctccagctcagccagttcgtctacgtcgaccgcttcgatttcgactcttcggtaccgtgtgtcgccggaatcagccccatcgctggccgccaccccttcttaggttcgccggagcctctggtggcagatttctccagggagaatattgtctgttgggggagtgaaggactctgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

122

Amino Acids

13.28

Weight (kDa)

4.18

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 2 cut(s) 213, 219
AciI CCGC 4 cut(s) 69, 190, 223, 280
AcoI YGGCCR 1 cut(s) 277
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 104, 275, 293
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 121, 199
AluI AGCT 2 cut(s) 121, 199
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 2 cut(s) 95, 277
Asp718I GGTACC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 13, 175
BanI GGYRCC 1 cut(s) 244
BccI CCATC 2 cut(s) 161, 278
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 154
BisI GCNGC 1 cut(s) 280
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 2 cut(s) 246, 306
BmrFI CCNGG 1 cut(s) 328
BpmI CTGGAG 2 cut(s) 179, 310
Bpu1102I GCTNAGC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 103, 327
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 275, 293
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 103, 327
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 104, 275, 293
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 2 cut(s) 97, 279
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 223
BsiSI CCGG 3 cut(s) 24, 258, 302
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 104, 275, 293
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 97, 279
Bsp143I GATC 1 cut(s) 172
Bsp1720I GCTNAGC 1 cut(s) 200
BspACI CCGC 4 cut(s) 69, 190, 223, 280
BspANI GGCC 2 cut(s) 97, 279
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 246, 306
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 103, 327
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 2 cut(s) 200, 292
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BsuRI GGCC 2 cut(s) 97, 279
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 245
CviJI RGCY 9 cut(s) 36, 97, 108, 121, 199, 204, 267, 279, 307
CviKI_1 RGCY 9 cut(s) 36, 97, 108, 121, 199, 204, 267, 279, 307
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 2 cut(s) 200, 292
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 1 cut(s) 62
FaqI GGGAC 1 cut(s) 50
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 2 cut(s) 213, 219
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 280
GsuI CTGGAG 2 cut(s) 179, 310
HaeIII GGCC 2 cut(s) 97, 279
HapII CCGG 3 cut(s) 24, 258, 302
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 5 cut(s) 80, 128, 236, 261, 360
HpaII CCGG 3 cut(s) 24, 258, 302
HphI GGTGA 2 cut(s) 13, 175
Hpy166II GTNNAC 2 cut(s) 214, 220
Hpy188I TCNGA 3 cut(s) 85, 127, 160
Hpy8I GTNNAC 2 cut(s) 214, 220
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 298, 350
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 3 cut(s) 114, 147, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 200, 292
HpySE526I ACGT 3 cut(s) 114, 147, 216
KpnI GGTACC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 51, 304
MaeII ACGT 3 cut(s) 114, 147, 216
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 231
MlyI GAGTC 4 cut(s) 74, 122, 230, 354
MnlI CCTC 5 cut(s) 83, 143, 191, 203, 318
MspI CCGG 3 cut(s) 24, 258, 302
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 246, 306
NmuCI GTSAC 1 cut(s) 19
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 225
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 1 cut(s) 281
PleI GAGTC 4 cut(s) 74, 122, 230, 354
PpsI GAGTC 4 cut(s) 74, 122, 230, 354
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 246, 306
PspPI GGNCC 1 cut(s) 96
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SalI GTCGAC 1 cut(s) 218
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 4 cut(s) 74, 122, 230, 354
ScrFI CCNGG 1 cut(s) 328
SetI ASST 7 cut(s) 117, 123, 146, 150, 201, 219, 298
SsiI CCGC 4 cut(s) 69, 190, 223, 280
SspI AATATT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 3 cut(s) 117, 150, 219
TaqI TCGA 3 cut(s) 219, 228, 234
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 1 cut(s) 261
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 2 cut(s) 213, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.