Rh6AG031000

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005561
Physical Location & Seq
Forward (+)
3831104 .. 3838181
7078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG031000.1

Sequence Viewer

Length: 627 bp
ATGAACTCCGCCACCAAAGTCACCGGCGACCACCGCTCTGCCCTGCTCCAAGTCATCGGCATAGTCCCCGCCCTCGCCGACTCCGACGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACTGCCTCCAGCTCGGCCAGTTCGTCTACGTCGACCGCTTCGATTTCGACTCTCCGGTGCTGTGCGTTGCAGGAATCAGCCCCATCGCTGGCCGCCACCCCTTCGTCGGTTCGCTGGAGCATCTGGTGGCAGATTTCTCTAGGGAGAAGATTGTTTGTTGGGGGAGTGAAGGACTCTGCTGCAAGGAAGAAAATGGCTACAATTGTTGCCAGAATTTCGAAGATTTCGGATTCAATCGGGATGTGCCAGACTCTGTCATTGATGGTGATGGTAGTGGTGTGGGGCTGTGCACATGTGAGGCTGACGACGGAGGATATGTTGTGTGTCGTGGTGAGGTTTGGTGGTCGGCTAGAGTGGTGGTTGACCACGGCGCCATTCAGTGTGGCTACGTCGGAGATGCAGACATAGTCAGTGCTGCTGGCCGCATGGAGATGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

208

Amino Acids

22.48

Weight (kDa)

4.23

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 1 - 105 2.9e-42 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 557
AccBSI CCGCTC 1 cut(s) 36
AccI GTMKAC 2 cut(s) 213, 219
AciI CCGC 6 cut(s) 9, 34, 69, 223, 280, 610
AcoI YGGCCR 3 cut(s) 202, 277, 607
AcsI RAATTY 1 cut(s) 400
AcyI GRCGYC 1 cut(s) 558
AfiI CCNNNNNNNGG 3 cut(s) 104, 275, 293
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 121, 199
AluI AGCT 2 cut(s) 121, 199
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 154
Alw44I GTGCAC 1 cut(s) 475
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 4 cut(s) 95, 202, 277, 607
ApaLI GTGCAC 1 cut(s) 475
ApeKI GCWGC 2 cut(s) 366, 602
ApoI RAATTY 1 cut(s) 400
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 3 cut(s) 13, 464, 530
AsuII TTCGAA 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 557
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 2 cut(s) 353, 589
BccI CCATC 4 cut(s) 278, 443, 449, 613
BceAI ACGGC 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 2 cut(s) 327, 537
BfoI RGCGCY 1 cut(s) 561
BisI GCNGC 4 cut(s) 280, 367, 603, 610
BlsI GCNGC 4 cut(s) 281, 368, 604, 611
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 559
BmsI GCATC 2 cut(s) 316, 574
BpmI CTGGAG 2 cut(s) 179, 323
Bpu14I TTCGAA 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 103, 553
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 3 cut(s) 489, 519, 608
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 275, 293
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 103, 553
BseGI GGATG 2 cut(s) 177, 433
BseLI CCNNNNNNNGG 3 cut(s) 104, 275, 293
BseNI ACTGG 1 cut(s) 205
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 2 cut(s) 353, 589
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 4 cut(s) 97, 204, 279, 609
BshNI GGYRCC 1 cut(s) 557
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 2 cut(s) 24, 242
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 104, 275, 293
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 4 cut(s) 97, 204, 279, 609
Bsp119I TTCGAA 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 6 cut(s) 9, 34, 69, 223, 280, 610
BspANI GGCC 4 cut(s) 97, 204, 279, 609
BspLI GGNNCC 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 557
BsrBI CCGCTC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 103, 553
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 558
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 277, 607
BstDSI CCRYGG 1 cut(s) 553
BstF5I GGATG 2 cut(s) 177, 433
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 353, 589
BsuRI GGCC 4 cut(s) 97, 204, 279, 609
BtgI CCRYGG 1 cut(s) 553
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 2 cut(s) 177, 433
BtsIMutI CAGTG 2 cut(s) 572, 604
Cac8I GCNNGC 2 cut(s) 277, 607
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 96
CviAII CATG 2 cut(s) 480, 613
DinI GGCGCC 1 cut(s) 559
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 3 cut(s) 202, 277, 607
Eco130I CCWWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 559
EheI GGCGCC 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 2 cut(s) 483, 616
FaiI YATR 5 cut(s) 62, 481, 504, 593, 614
FaqI GGGAC 1 cut(s) 50
FatI CATG 2 cut(s) 479, 612
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 2 cut(s) 213, 219
Fnu4HI GCNGC 4 cut(s) 280, 367, 603, 610
FokI GGATG 2 cut(s) 164, 440
Fsp4HI GCNGC 4 cut(s) 280, 367, 603, 610
FspBI CTAG 2 cut(s) 327, 537
GlaI GCGC 1 cut(s) 559
GluI GCNGC 4 cut(s) 280, 367, 603, 610
GsuI CTGGAG 2 cut(s) 179, 323
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 4 cut(s) 97, 204, 279, 609
HapII CCGG 2 cut(s) 24, 242
HhaI GCGC 1 cut(s) 560
Hin1I GRCGYC 1 cut(s) 558
Hin1II CATG 2 cut(s) 483, 616
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 2 cut(s) 220, 550
HindII GTYRAC 2 cut(s) 220, 550
HinfI GANTC 7 cut(s) 80, 128, 236, 261, 360, 417, 437
HpaII CCGG 2 cut(s) 24, 242
HphI GGTGA 3 cut(s) 13, 464, 530
Hpy166II GTNNAC 4 cut(s) 214, 220, 477, 550
Hpy188I TCNGA 5 cut(s) 85, 127, 160, 416, 581
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 4 cut(s) 214, 220, 477, 550
Hpy99I CGWCG 5 cut(s) 89, 221, 296, 497, 581
HpyAV CCTTC 2 cut(s) 298, 350
HpyCH4IV ACGT 4 cut(s) 114, 147, 216, 576
HpyCH4V TGCA 4 cut(s) 257, 369, 477, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 4 cut(s) 114, 147, 216, 576
Hsp92I GRCGYC 1 cut(s) 558
Hsp92II CATG 2 cut(s) 483, 616
HspAI GCGC 1 cut(s) 558
KasI GGCGCC 1 cut(s) 557
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 51, 304
Lsp1109I GCAGC 2 cut(s) 353, 589
LweI GCATC 2 cut(s) 316, 574
MaeI CTAG 2 cut(s) 327, 537
MaeII ACGT 4 cut(s) 114, 147, 216, 576
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 174
MbiI CCGCTC 1 cut(s) 36
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 346, 386, 419
MfeI CAATTG 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 2 cut(s) 388, 400
Mly113I GGCGCC 1 cut(s) 558
MlyI GAGTC 5 cut(s) 74, 122, 230, 354, 431
MmeI TCCRAC 3 cut(s) 108, 150, 559
MnlI CCTC 9 cut(s) 83, 101, 143, 164, 191, 203, 478, 491, 514
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 2 cut(s) 24, 242
MunI CAATTG 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 33
NarI GGCGCC 1 cut(s) 558
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 483, 616
NlaIV GGNNCC 1 cut(s) 559
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 483
NspV TTCGAA 1 cut(s) 405
PciI ACATGT 1 cut(s) 479
PcsI WCGNNNNNNNCGW 4 cut(s) 81, 207, 216, 225
PfeI GAWTC 2 cut(s) 261, 417
PflFI GACNNNGTC 2 cut(s) 440, 593
PkrI GCNGC 4 cut(s) 281, 368, 604, 611
PleI GAGTC 5 cut(s) 74, 122, 230, 354, 431
PluTI GGCGCC 1 cut(s) 561
PpsI GAGTC 5 cut(s) 74, 122, 230, 354, 431
PscI ACATGT 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 440
PsyI GACNNNGTC 2 cut(s) 440, 593
RseI CAYNNNNRTG 1 cut(s) 617
SalI GTCGAC 1 cut(s) 218
SatI GCNGC 4 cut(s) 280, 367, 603, 610
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 5 cut(s) 74, 122, 230, 354, 431
SduI GDGCHC 1 cut(s) 479
SetI ASST 9 cut(s) 93, 117, 123, 146, 150, 201, 219, 525, 579
SfaNI GCATC 2 cut(s) 316, 574
SfoI GGCGCC 1 cut(s) 559
SfuI TTCGAA 1 cut(s) 405
SgrAI CRCCGGYG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 617
Sse9I AATT 2 cut(s) 388, 400
SsiI CCGC 6 cut(s) 9, 34, 69, 223, 280, 610
SspDI GGCGCC 1 cut(s) 557
SspMI CTAG 2 cut(s) 327, 537
StyI CCWWGG 1 cut(s) 103
TaiI ACGT 4 cut(s) 117, 150, 219, 579
TaqI TCGA 4 cut(s) 219, 228, 234, 405
TasI AATT 2 cut(s) 388, 400
TauI GCSGC 2 cut(s) 282, 612
TfiI GAWTC 2 cut(s) 261, 417
TscAI CASTG 2 cut(s) 572, 604
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 366, 602
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 2 cut(s) 572, 604
Tth111I GACNNNGTC 2 cut(s) 440, 593
VneI GTGCAC 1 cut(s) 475
XapI RAATTY 1 cut(s) 400
XceI RCATGY 1 cut(s) 483
XmiI GTMKAC 2 cut(s) 213, 219
XspI CTAG 2 cut(s) 327, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.