Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2251540 .. 2253392

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGATCGAATGGCGTGCAACTCACAGGTATTCTTAGCACATGGGATCTTGAGACTGCCACAGCCGCAAGTGTCCGGCGGCATCTGGAGGAGGATTTTCGGGTCCATCTTTCTAATACCATCCAAGAACAAATCGACATCTTCTTTGATGATGGGAAAGAGGATGAGAATGAAGGCAAAGGTAGAAGAACAAGACCGGAGATATGTACGTTGTCTCCACAGCTTCAAGACTTTGTTGGAGGGGGACCCGAAATGGCCCGTGCGGAGGCAATGAAGAAAATTGTGGCTTATATCCGGGAAAAGGGTTTGCAGATGAATTGTAACCATCTCATATTTGCAGATGATAACCTAAAGTCCCTTTTTCCTGGCTGTATTAAATCTATCAGTATGTTTCAAATACATGACCTCCTATCCAAGGGTTTGCAGATGAATTGTAAGCATCTCATATTTGCAAATGATAAACTAAAGTCCCTTTTTCCTGGCTGTACTAAATCTATCTGTATGTTTCAAATACATGACCTCCTATCCAAGCATGGTCATCTACAACCGCTTAAAGCTGGCAAAGATGAGCGCGGGGTGAGGAAGACGAACGATGAAGCAATATGTAAAAAATCTGAGAATTGTGAAGGTGATCAAGATAGGGTGAAGAAGAAGGGGAAGAATGTTACAGAGGAAGATGTGAGACCGTGGGATAAAATGCCACAAGCTATTCTGGTGAAAATCTTAAAGCTATTACCATTTCCTGATTGGTCATTCCACCCCTGCTATGTTTGCAGTTCATGGCAAGTGGCAGTCGCCGATGTAATGTTTCCACCTGAAAACCGTGAGCTTAATCTGCTAGTCCTTGATTCATATCCCTGGATATTCAGGCAAAGGTGGTTCTTTAAATACCTCAGGATTGCCTTAAATTCTCCATCCGCCATCTGTTGGAGAACGCTTTACTTGCCCCAGACTGCATTCATCAAAAATGATATCCTTAGTGAGATTGCTGAAAAGACACCGGAACTGCGTGAACTTTATGTACCTCAAAAGTTGTGGGAAGATGTTCTTCTTAAGTCGGTTGCACCTAAGTGGAAGAATTTGACAAGAGGTCATATATGGTTCGGCTACCACCAAGTTTTCTTATCTCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

378

Amino Acids

43.55

Weight (kDa)

8.39

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	9 - 48	4.7e-06	DEK C terminal domain
SWIB	PF02201	68 - 139	1.6e-16	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	927
AccII	CGCG	1 cut(s)	573
AciI	CCGC	6 cut(s)	66, 79, 263, 548, 573, 918
AclWI	GGATC	2 cut(s)	13, 54
AcsI	RAATTY	2 cut(s)	907, 1078
AfaI	GTAC	3 cut(s)	208, 487, 1023
AfiI	CCNNNNNNNGG	4 cut(s)	265, 301, 415, 927
AflII	CTTAAG	1 cut(s)	1052
AgsI	TTSAA	3 cut(s)	227, 395, 509
AhdI	GACNNNNNGTC	1 cut(s)	1089
AjnI	CCWGG	3 cut(s)	364, 478, 857
AleI	CACNNNNGTG	1 cut(s)	1069
AluBI	AGCT	6 cut(s)	223, 557, 707, 730, 829, 1134
AluI	AGCT	6 cut(s)	223, 557, 707, 730, 829, 1134
Alw26I	GTCTC	3 cut(s)	47, 219, 676
AlwI	GGATC	2 cut(s)	13, 54
AoxI	GGCC	1 cut(s)	255
ApoI	RAATTY	2 cut(s)	907, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	3 cut(s)	103, 245, 256
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	4 cut(s)	589, 641, 655, 727
AvaII	GGWCC	2 cut(s)	103, 245
AxyI	CCTNAGG	1 cut(s)	893
BbsI	GAAGAC	1 cut(s)	590
BccI	CCATC	6 cut(s)	114, 128, 146, 333, 922, 929
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	3 cut(s)	366, 480, 859
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	3 cut(s)	47, 219, 676
BfaI	CTAG	1 cut(s)	839
BfrI	CTTAAG	1 cut(s)	1052
BisI	GCNGC	2 cut(s)	66, 80
BlsI	GCNGC	2 cut(s)	67, 81
Bme1390I	CCNGG	4 cut(s)	296, 366, 480, 859
Bme18I	GGWCC	2 cut(s)	103, 245
BmeRI	GACNNNNNGTC	1 cut(s)	1089
BmgT120I	GGNCC	3 cut(s)	103, 245, 256
BmiI	GGNNCC	3 cut(s)	104, 246, 247
BmrFI	CCNGG	4 cut(s)	296, 366, 480, 859
BmsI	GCATC	2 cut(s)	91, 448
BpiI	GAAGAC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	852
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	3 cut(s)	414, 686, 857
BsaWI	WCCGGW	2 cut(s)	196, 1000
BsaXI	ACNNNNNCTCC	6 cut(s)	199, 229, 390, 420, 504, 534
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 301, 415, 927
Bse21I	CCTNAGG	1 cut(s)	893
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	3 cut(s)	366, 480, 859
BseDI	CCNNGG	3 cut(s)	414, 686, 857
BseGI	GGATG	3 cut(s)	120, 169, 914
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	4 cut(s)	265, 301, 415, 927
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	606, 907
BseRI	GAGGAG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	257
BsiSI	CCGG	4 cut(s)	76, 197, 295, 1001
BslFI	GGGAC	3 cut(s)	258, 340, 454
BslI	CCNNNNNNNGG	4 cut(s)	265, 301, 415, 927
BsmAI	GTCTC	3 cut(s)	47, 219, 676
BsmFI	GGGAC	3 cut(s)	258, 340, 454
BsmI	GAATGC	1 cut(s)	956
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	676
Bsp143I	GATC	3 cut(s)	5, 46, 631
BspACI	CCGC	6 cut(s)	66, 79, 263, 548, 573, 918
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	607, 906
BspFNI	CGCG	1 cut(s)	573
BspLI	GGNNCC	3 cut(s)	104, 246, 247
BspPI	GGATC	2 cut(s)	13, 54
BspTI	CTTAAG	1 cut(s)	1052
BspTNI	GGTCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	414, 686, 857
BssMI	GATC	3 cut(s)	5, 46, 631
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	3 cut(s)	366, 480, 859
Bst4CI	ACNGT	2 cut(s)	687, 824
BstAFI	CTTAAG	1 cut(s)	1052
BstC8I	GCNNGC	2 cut(s)	17, 559
BstDEI	CTNAG	5 cut(s)	35, 615, 893, 977, 1068
BstDSI	CCRYGG	1 cut(s)	686
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	3 cut(s)	120, 169, 914
BstFNI	CGCG	1 cut(s)	573
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	3 cut(s)	8, 49, 634
BstMAI	GTCTC	3 cut(s)	47, 219, 676
BstMBI	GATC	3 cut(s)	5, 46, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 771, 835, 943
BstNI	CCWGG	3 cut(s)	366, 480, 859
BstSCI	CCNGG	4 cut(s)	294, 364, 478, 857
BstUI	CGCG	1 cut(s)	573
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	893
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	686
BtsCI	GGATG	3 cut(s)	120, 169, 914
Cac8I	GCNNGC	2 cut(s)	17, 559
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	3 cut(s)	103, 245, 256
Csp6I	GTAC	3 cut(s)	207, 486, 1022
CspCI	CAANNNNNGTGG	2 cut(s)	1016, 1051
CviAII	CATG	5 cut(s)	42, 401, 515, 533, 780
CviQI	GTAC	3 cut(s)	207, 486, 1022
DdeI	CTNAG	5 cut(s)	35, 615, 893, 977, 1068
DpnI	GATC	3 cut(s)	7, 48, 633
DpnII	GATC	3 cut(s)	5, 46, 631
DraI	TTTAAA	1 cut(s)	886
DriI	GACNNNNNGTC	1 cut(s)	1089
Eam1105I	GACNNNNNGTC	1 cut(s)	1089
EciI	GGCGGA	1 cut(s)	907
Eco130I	CCWWGG	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	676
Eco32I	GATATC	1 cut(s)	973
Eco47I	GGWCC	2 cut(s)	103, 245
Eco81I	CCTNAGG	1 cut(s)	893
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	364, 478, 857
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	5 cut(s)	45, 404, 518, 536, 783
FalI	AAGNNNNNCTT	2 cut(s)	1032, 1064
FaqI	GGGAC	3 cut(s)	258, 340, 454
FatI	CATG	5 cut(s)	41, 400, 514, 532, 779
FauI	CCCGC	1 cut(s)	566
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	66, 80
FokI	GGATG	3 cut(s)	107, 176, 901
Fsp4HI	GCNGC	2 cut(s)	66, 80
FspBI	CTAG	1 cut(s)	839
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	2 cut(s)	66, 80
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	4 cut(s)	76, 197, 295, 1001
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	5 cut(s)	45, 404, 518, 536, 783
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HinfI	GANTC	1 cut(s)	848
HpaII	CCGG	4 cut(s)	76, 197, 295, 1001
HphI	GGTGA	4 cut(s)	589, 641, 655, 727
Hpy166II	GTNNAC	1 cut(s)	1013
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	6 cut(s)	50, 86, 227, 635, 743, 895
Hpy8I	GTNNAC	1 cut(s)	1013
HpyAV	CCTTC	3 cut(s)	167, 620, 646
HpyCH4III	ACNGT	2 cut(s)	687, 824
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	8 cut(s)	19, 310, 338, 424, 452, 774, 956, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 771, 835, 943
HpyF3I	CTNAG	5 cut(s)	35, 615, 893, 977, 1068
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	5 cut(s)	45, 404, 518, 536, 783
HspAI	GCGC	1 cut(s)	571
KflI	GGGWCCC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	3 cut(s)	5, 46, 631
LweI	GCATC	2 cut(s)	91, 448
MaeI	CTAG	1 cut(s)	839
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	320, 664
MalI	GATC	3 cut(s)	7, 48, 633
MboI	GATC	3 cut(s)	5, 46, 631
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	6 cut(s)	279, 316, 430, 619, 907, 1078
MmeI	TCCRAC	2 cut(s)	217, 908
MroXI	GAANNNNTTC	1 cut(s)	1044
MseI	TTAA	7 cut(s)	375, 552, 725, 831, 885, 905, 1053
MslI	CAYNNNNRTG	1 cut(s)	1069
MspCI	CTTAAG	1 cut(s)	1052
MspI	CCGG	4 cut(s)	76, 197, 295, 1001
MspR9I	CCNGG	4 cut(s)	296, 366, 480, 859
Mva1269I	GAATGC	1 cut(s)	956
MvaI	CCWGG	3 cut(s)	366, 480, 859
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	4 cut(s)	65, 771, 835, 943
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	3 cut(s)	5, 46, 631
NlaIII	CATG	5 cut(s)	45, 404, 518, 536, 783
NlaIV	GGNNCC	3 cut(s)	104, 246, 247
OliI	CACNNNNGTG	1 cut(s)	1069
PctI	GAATGC	1 cut(s)	956
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	1 cut(s)	848
PflMI	CCANNNNNTGG	1 cut(s)	927
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	67, 81
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	3 cut(s)	364, 478, 857
PspGI	CCWGG	3 cut(s)	364, 478, 857
PspN4I	GGNNCC	3 cut(s)	104, 246, 247
PspPI	GGNCC	3 cut(s)	103, 245, 256
PspPPI	RGGWCCY	1 cut(s)	245
PsrI	GAACNNNNNNTAC	2 cut(s)	1005, 1037
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	3 cut(s)	208, 487, 1023
RsaNI	GTAC	3 cut(s)	207, 486, 1022
RseI	CAYNNNNRTG	1 cut(s)	1069
SaqAI	TTAA	7 cut(s)	375, 552, 725, 831, 885, 905, 1053
SatI	GCNGC	2 cut(s)	66, 80
Sau3AI	GATC	3 cut(s)	5, 46, 631
Sau96I	GGNCC	3 cut(s)	103, 245, 256
ScrFI	CCNGG	4 cut(s)	296, 366, 480, 859
SfaNI	GCATC	2 cut(s)	91, 448
SinI	GGWCC	2 cut(s)	103, 245
SmiMI	CAYNNNNRTG	1 cut(s)	1069
SmlI	CTYRAG	2 cut(s)	50, 1052
SmoI	CTYRAG	2 cut(s)	50, 1052
Sse9I	AATT	6 cut(s)	279, 316, 430, 619, 907, 1078
SsiI	CCGC	6 cut(s)	66, 79, 263, 548, 573, 918
SspMI	CTAG	1 cut(s)	839
StyD4I	CCNGG	4 cut(s)	294, 364, 478, 857
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	687, 824
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	8, 135
TasI	AATT	6 cut(s)	279, 316, 430, 619, 907, 1078
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	2 cut(s)	68, 82
TfiI	GAWTC	1 cut(s)	848
Tru1I	TTAA	7 cut(s)	375, 552, 725, 831, 885, 905, 1053
Tru9I	TTAA	7 cut(s)	375, 552, 725, 831, 885, 905, 1053
TspDTI	ATGAA	8 cut(s)	186, 287, 329, 443, 609, 768, 840, 949
Van91I	CCANNNNNTGG	1 cut(s)	927
Vha464I	CTTAAG	1 cut(s)	1052
VpaK11BI	GGWCC	2 cut(s)	103, 245
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	2 cut(s)	907, 1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.