Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2233231 .. 2236049

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG031600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCGGTTAGAGGTCAATTACAAAGTACAACAGGTATTCCAAAGGCAGTCAGTAGCATAAAGCTCCTGGACGTGCTACTGGAAATCCTCAGTACTTGGGATTTGGAAACGGCTACCTCCGGAAGCGTCCGCCGGCATCTGGAGAAGGATTTTGGGGCTGATCTATCGGACCCAAAATATCGTATCATCAAAGAAAAAATCGACGTCTTTTTTGAGGAAGGGGAAGAGGATGAGAATGAAGGTAAAGGTAGAAGAAGAAGAAAGAGAAAGAGAAACGAGAAAGAGATATGTGTAGTGTCTCCACAGCTTCAAGACATTGTTGGAGAGGGTCCTGAAATGGCCCGAGCCAAGGCAGTGAAGAAAATTGTGGCTTATGGTCGGGAAAAGGGTTTGCATAAAAACAAGTCTATTATATATACTGATGATAAACTAGAGGCCCTTTTTCCTGGCAGGAAATCTATTCATATATTTCGAATTGATAACCTGTTGGCCAAGAACAGTCATATACAGCCGCTTAAAGTTATGAAGCTGTGCAAAGAATGCAAGGTGAGGAGGACGAGGACGAGGAGGGAAAATGAGACTTGTGAATGTGATCAAATTGGGGTGAAAAGTCAGAGGAAGGATACCCAACAGAAACATAACCTAGCAGAGGAAGATATAAGATCGTGGGATACATTGCCACACGATATTCTGGTGAAAATCATTGATTTACTTTGCGGTCCACTCAAGTATTGGACACCCATCTCACCAGCTTTCTCCACGCGTTACGCGTCCGTCAGCCGCTCATGGAAATTGGCAGTCCTTGATCTAGTGTTTCCACCTAGTGATGTGCTTGATCTGCGAGTCCTTGATTCACATCCCTGGAAATCTTGCCATAAGATGTTCTTTCATTACCTCAGGATTGCCTTTAAATGCCGACCCACCAGCGGTTGGACAACACTATACTTTCCCAACGAGACTATATTTGCCGAACGTCCCTTTCTTCAAAATAACACTTTTATGATCAAAAATGATATCCTGACTTTGATCGCTGAGAAGTACGTTCTAGACTTTTCTTTAATTCCCTCTCTTATGAATATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

361

Amino Acids

41.79

Weight (kDa)

9.28

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	22 - 71	9.8e-09	DEK C terminal domain
SWIB	PF02201	96 - 165	5.5e-13	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	930
AccBSI	CCGCTC	1 cut(s)	783
AccII	CGCG	2 cut(s)	763, 770
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	5 cut(s)	130, 512, 717, 781, 927
AcoI	YGGCCR	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	824
AfaI	GTAC	3 cut(s)	28, 94, 1040
AfiI	CCNNNNNNNGG	5 cut(s)	139, 349, 649, 926, 930
AflIII	ACRYGT	2 cut(s)	761, 768
AgsI	TTSAA	2 cut(s)	311, 986
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	3 cut(s)	66, 445, 860
AluBI	AGCT	4 cut(s)	64, 307, 529, 752
AluI	AGCT	4 cut(s)	64, 307, 529, 752
Alw26I	GTCTC	3 cut(s)	303, 572, 950
Ama87I	CYCGRG	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	3 cut(s)	339, 435, 489
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	5 cut(s)	169, 329, 340, 436, 719
AsuHPI	GGTGA	4 cut(s)	559, 616, 706, 738
AsuII	TTCGAA	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	3 cut(s)	169, 329, 719
AxyI	CCTNAGG	1 cut(s)	896
BalI	TGGCCA	1 cut(s)	491
BccI	CCATC	1 cut(s)	749
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	3 cut(s)	68, 447, 862
BciVI	GTATCC	2 cut(s)	616, 664
BclI	TGATCA	2 cut(s)	592, 1002
BcoDI	GTCTC	3 cut(s)	303, 572, 950
BfaI	CTAG	5 cut(s)	431, 644, 809, 822, 1046
BfuI	GTATCC	2 cut(s)	616, 664
BisI	GCNGC	2 cut(s)	512, 781
BlsI	GCNGC	2 cut(s)	513, 782
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	3 cut(s)	68, 447, 862
Bme18I	GGWCC	3 cut(s)	169, 329, 719
BmeT110I	CYCGRG	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	5 cut(s)	169, 329, 340, 436, 719
BmiI	GGNNCC	2 cut(s)	171, 330
BmrFI	CCNGG	3 cut(s)	68, 447, 862
BmsI	GCATC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	348, 860
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 349, 649, 926, 930
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	84
Bse21I	CCTNAGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	674
Bse8I	GATNNNNATC	1 cut(s)	855
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	3 cut(s)	68, 447, 862
BseDI	CCNNGG	2 cut(s)	348, 860
BseGI	GGATG	2 cut(s)	235, 856
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	5 cut(s)	139, 349, 649, 926, 930
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	3 cut(s)	103, 910, 1023
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	565, 580
Bsh1236I	CGCG	2 cut(s)	763, 770
BshFI	GGCC	3 cut(s)	341, 437, 491
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	120, 133
BslFI	GGGAC	1 cut(s)	960
BslI	CCNNNNNNNGG	5 cut(s)	139, 349, 649, 926, 930
BsmAI	GTCTC	3 cut(s)	303, 572, 950
BsmFI	GGGAC	1 cut(s)	960
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	3 cut(s)	341, 437, 491
BsoBI	CYCGRG	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	119
Bsp143I	GATC	7 cut(s)	160, 592, 662, 805, 835, 1002, 1026
BspACI	CCGC	5 cut(s)	130, 512, 717, 781, 927
BspANI	GGCC	3 cut(s)	341, 437, 491
BspCNI	CTCAG	3 cut(s)	102, 909, 1024
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	763, 770
BspLI	GGNNCC	2 cut(s)	171, 330
BspT104I	TTCGAA	1 cut(s)	472
BsrBI	CCGCTC	1 cut(s)	783
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	348, 860
BssMI	GATC	7 cut(s)	160, 592, 662, 805, 835, 1002, 1026
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	3 cut(s)	68, 447, 862
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	3 cut(s)	89, 896, 1032
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	235, 856
BstFNI	CGCG	2 cut(s)	763, 770
BstKTI	GATC	7 cut(s)	163, 595, 665, 808, 838, 1005, 1029
BstMAI	GTCTC	3 cut(s)	303, 572, 950
BstMBI	GATC	7 cut(s)	160, 592, 662, 805, 835, 1002, 1026
BstMWI	GCNNNNNNNGC	2 cut(s)	540, 838
BstNI	CCWGG	3 cut(s)	68, 447, 862
BstSCI	CCNGG	3 cut(s)	66, 445, 860
BstUI	CGCG	2 cut(s)	763, 770
Bsu36I	CCTNAGG	1 cut(s)	896
BsuI	GTATCC	2 cut(s)	616, 664
BsuRI	GGCC	3 cut(s)	341, 437, 491
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	235, 856
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	5 cut(s)	169, 329, 340, 436, 719
CseI	GACGC	2 cut(s)	115, 759
Csp6I	GTAC	3 cut(s)	27, 93, 1039
CviAII	CATG	1 cut(s)	786
CviQI	GTAC	3 cut(s)	27, 93, 1039
DdeI	CTNAG	3 cut(s)	89, 896, 1032
DpnI	GATC	7 cut(s)	162, 594, 664, 807, 837, 1004, 1028
DpnII	GATC	7 cut(s)	160, 592, 662, 805, 835, 1002, 1026
DraI	TTTAAA	1 cut(s)	910
DraIII	CACNNNGTG	1 cut(s)	824
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	1015
Eco47I	GGWCC	3 cut(s)	169, 329, 719
Eco81I	CCTNAGG	1 cut(s)	896
Eco88I	CYCGRG	1 cut(s)	342
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoO109I	RGGNCCY	2 cut(s)	329, 436
EcoRII	CCWGG	3 cut(s)	66, 445, 860
EcoRV	GATATC	1 cut(s)	1015
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	789
FalI	AAGNNNNNCTT	2 cut(s)	869, 901
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	1 cut(s)	785
FbaI	TGATCA	2 cut(s)	592, 1002
Fnu4HI	GCNGC	2 cut(s)	512, 781
FokI	GGATG	2 cut(s)	242, 843
Fsp4HI	GCNGC	2 cut(s)	512, 781
FspBI	CTAG	5 cut(s)	431, 644, 809, 822, 1046
GluI	GCNGC	2 cut(s)	512, 781
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	341, 437, 491
HapII	CCGG	2 cut(s)	120, 133
HgaI	GACGC	2 cut(s)	115, 759
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	789
HinfI	GANTC	2 cut(s)	843, 851
HpaII	CCGG	2 cut(s)	120, 133
HphI	GGTGA	4 cut(s)	559, 616, 706, 738
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	2 cut(s)	169, 615
Hpy188III	TCNNGA	8 cut(s)	120, 140, 311, 332, 380, 898, 1018, 1046
Hpy8I	GTNNAC	1 cut(s)	722
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	4 cut(s)	139, 212, 233, 613
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	4 cut(s)	72, 204, 973, 1041
HpyCH4V	TGCA	3 cut(s)	394, 534, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	540, 838
HpyF3I	CTNAG	3 cut(s)	89, 896, 1032
HpySE526I	ACGT	4 cut(s)	72, 204, 973, 1041
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	789
Kpn2I	TCCGGA	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	132
KroNI	GCCGGC	1 cut(s)	134
Ksp22I	TGATCA	2 cut(s)	592, 1002
Kzo9I	GATC	7 cut(s)	160, 592, 662, 805, 835, 1002, 1026
LmnI	GCTCC	1 cut(s)	69
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	5 cut(s)	431, 644, 809, 822, 1046
MaeII	ACGT	4 cut(s)	72, 204, 973, 1041
MaeIII	GTNAC	1 cut(s)	764
MalI	GATC	7 cut(s)	162, 594, 664, 807, 837, 1004, 1028
MbiI	CCGCTC	1 cut(s)	783
MboI	GATC	7 cut(s)	160, 592, 662, 805, 835, 1002, 1026
MboII	GAAGA	7 cut(s)	236, 264, 267, 270, 370, 665, 974
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	6 cut(s)	17, 363, 474, 597, 791, 1059
MluI	ACGCGT	2 cut(s)	761, 768
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	852
MmeI	TCCRAC	2 cut(s)	301, 911
Mox20I	TGGCCA	1 cut(s)	491
MroI	TCCGGA	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	4 cut(s)	516, 909, 1058, 1084
MslI	CAYNNNNRTG	1 cut(s)	998
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	927
MspI	CCGG	2 cut(s)	120, 133
MspR9I	CCNGG	3 cut(s)	68, 447, 862
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	3 cut(s)	68, 447, 862
MvnI	CGCG	2 cut(s)	763, 770
MwoI	GCNNNNNNNGC	2 cut(s)	540, 838
NaeI	GCCGGC	1 cut(s)	134
NdeII	GATC	7 cut(s)	160, 592, 662, 805, 835, 1002, 1026
NgoMIV	GCCGGC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	789
NlaIV	GGNNCC	2 cut(s)	171, 330
NspV	TTCGAA	1 cut(s)	472
PcsI	WCGNNNNNNNCGW	1 cut(s)	767
PctI	GAATGC	1 cut(s)	545
PdiI	GCCGGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	851
PflMI	CCANNNNNTGG	1 cut(s)	930
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	513, 782
PleI	GAGTC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	851
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	3 cut(s)	66, 445, 860
PspGI	CCWGG	3 cut(s)	66, 445, 860
PspN4I	GGNNCC	2 cut(s)	171, 330
PspPI	GGNCC	5 cut(s)	169, 329, 340, 436, 719
PspPPI	RGGWCCY	1 cut(s)	329
RsaI	GTAC	3 cut(s)	28, 94, 1040
RsaNI	GTAC	3 cut(s)	27, 93, 1039
RseI	CAYNNNNRTG	1 cut(s)	998
SaqAI	TTAA	4 cut(s)	516, 909, 1058, 1084
SatI	GCNGC	2 cut(s)	512, 781
Sau3AI	GATC	7 cut(s)	160, 592, 662, 805, 835, 1002, 1026
Sau96I	GGNCC	5 cut(s)	169, 329, 340, 436, 719
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	852
ScrFI	CCNGG	3 cut(s)	68, 447, 862
SfaNI	GCATC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	3 cut(s)	169, 329, 719
SmiMI	CAYNNNNRTG	1 cut(s)	998
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	6 cut(s)	17, 363, 474, 597, 791, 1059
SsiI	CCGC	5 cut(s)	130, 512, 717, 781, 927
SspI	AATATT	1 cut(s)	1078
SspMI	CTAG	5 cut(s)	431, 644, 809, 822, 1046
StyD4I	CCNGG	3 cut(s)	66, 445, 860
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	4 cut(s)	75, 207, 976, 1044
TaqI	TCGA	2 cut(s)	201, 472
TasI	AATT	6 cut(s)	17, 363, 474, 597, 791, 1059
TatI	WGTACW	2 cut(s)	26, 92
TauI	GCSGC	2 cut(s)	514, 783
TfiI	GAWTC	1 cut(s)	851
Tru1I	TTAA	4 cut(s)	516, 909, 1058, 1084
Tru9I	TTAA	4 cut(s)	516, 909, 1058, 1084
TscAI	CASTG	1 cut(s)	360
TspDTI	ATGAA	4 cut(s)	252, 452, 539, 878
TspGWI	ACGGA	1 cut(s)	763
TspRI	CASTG	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	930
VpaK11BI	GGWCC	3 cut(s)	169, 329, 719
XagI	CCTNNNNNAGG	1 cut(s)	647
XbaI	TCTAGA	1 cut(s)	1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XspI	CTAG	5 cut(s)	431, 644, 809, 822, 1046
ZraI	GACGTC	1 cut(s)	205
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.