Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2621748 .. 2622937

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCGGTTAGAGGTCAATTACAAAGTACAACCGGTATTCCAAAGGCAGTCAGTAGCATAAAGCTCCTGGACGTGCTACTGGAAATCCTCAGTACTTGGGATTTGGAAATGGCTACAGCCGGAAGCGTCCGCAGGCATCTGGAGAAGGATTTTGGGGCTGATCTATCGGACCCAAAATATCGTCTTGTTGAGGAAGGGGAAGAGGATGAGAATGAAGGTAAAGGTAGAAGAAGAAGAAAGAGAAAGAGAAACGAGAAAGAGATATGTATAGTACTGTCTCCACAGCTTCAAGACATTGTTGGAGAGGGTCCTGAAATGGCCCGAGCCAAGGCAGTGAAGAAAATTGTGGCTTACGGTCGGGAAAAGGGTTTGTATAAAAACAAGTCTATTATATATACTGATGATAAACTAGAGGCCCTTTTTCCTGGCAGGAGATCTATTCATATATTTCGAATTGATAACCTGTTGGCCAAGATCAGTCATATACAGCAGCTTAAGGTTACGAAGCTGTGCAAAGAATGCAAGGTGAGGAGGACGAGGAAGAGGAGGGAAAATGAGACTTATTGTGAATGTGATCAAATCAGGGTGAAAAGTCAGAGGAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

203

Amino Acids

23.37

Weight (kDa)

9.72

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	22 - 58	3.7e-06	DEK C terminal domain
SWIB	PF02201	91 - 158	9.7e-13	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	468
AfaI	GTAC	3 cut(s)	28, 94, 273
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflII	CTTAAG	1 cut(s)	494
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	66, 424
AluBI	AGCT	4 cut(s)	64, 286, 493, 508
AluI	AGCT	4 cut(s)	64, 286, 493, 508
Alw26I	GTCTC	2 cut(s)	282, 551
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	3 cut(s)	318, 414, 468
ApeKI	GCWGC	1 cut(s)	490
AsiGI	ACCGGT	1 cut(s)	32
AspS9I	GGNCC	4 cut(s)	169, 308, 319, 415
AsuHPI	GGTGA	2 cut(s)	538, 598
AsuII	TTCGAA	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	2 cut(s)	169, 308
BalI	TGGCCA	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	502
BciT130I	CCWGG	2 cut(s)	68, 426
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	282, 551
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	494
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
BmcAI	AGTACT	2 cut(s)	94, 273
Bme1390I	CCNGG	2 cut(s)	68, 426
Bme18I	GGWCC	2 cut(s)	169, 308
BmeT110I	CYCGRG	1 cut(s)	321
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	169, 308, 319, 415
BmiI	GGNNCC	2 cut(s)	171, 309
BmrFI	CCNGG	2 cut(s)	68, 426
BmsI	GCATC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	68, 426
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	544, 559
BseXI	GCAGC	1 cut(s)	502
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	3 cut(s)	320, 416, 470
BshTI	ACCGGT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	33, 120
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	282, 551
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	3 cut(s)	320, 416, 470
BsoBI	CYCGRG	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	451
Bsp143I	GATC	4 cut(s)	160, 434, 474, 574
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	3 cut(s)	320, 416, 470
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	171, 309
BspT104I	TTCGAA	1 cut(s)	451
BspTI	CTTAAG	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	4 cut(s)	160, 434, 474, 574
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	68, 426
Bst4CI	ACNGT	2 cut(s)	276, 356
Bst6I	CTCTTC	2 cut(s)	195, 536
BstAFI	CTTAAG	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	163, 437, 477, 577
BstMAI	GTCTC	2 cut(s)	282, 551
BstMBI	GATC	4 cut(s)	160, 434, 474, 574
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	519
BstNI	CCWGG	2 cut(s)	68, 426
BstSCI	CCNGG	2 cut(s)	66, 424
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	3 cut(s)	320, 416, 470
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	4 cut(s)	169, 308, 319, 415
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	27, 93, 272
CspAI	ACCGGT	1 cut(s)	32
CviQI	GTAC	3 cut(s)	27, 93, 272
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	162, 436, 476, 576
DpnII	GATC	4 cut(s)	160, 434, 474, 574
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	2 cut(s)	195, 536
EarI	CTCTTC	2 cut(s)	195, 536
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	169, 308
Eco88I	CYCGRG	1 cut(s)	321
EcoO109I	RGGNCCY	2 cut(s)	308, 415
EcoRII	CCWGG	2 cut(s)	66, 424
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	320, 416, 470
HapII	CCGG	2 cut(s)	33, 120
HgaI	GACGC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	33, 120
HphI	GGTGA	2 cut(s)	538, 598
Hpy188I	TCNGA	2 cut(s)	169, 597
Hpy188III	TCNNGA	4 cut(s)	140, 290, 311, 359
HpyAV	CCTTC	3 cut(s)	139, 188, 209
HpyCH4III	ACNGT	2 cut(s)	276, 356
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	513, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	519
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	160, 434, 474, 574
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	4 cut(s)	162, 436, 476, 576
MboI	GATC	4 cut(s)	160, 434, 474, 574
MboII	GAAGA	6 cut(s)	212, 240, 243, 246, 349, 553
MflI	RGATCY	1 cut(s)	434
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	3 cut(s)	17, 342, 453
MluNI	TGGCCA	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	470
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	33, 120
MspR9I	CCNGG	2 cut(s)	68, 426
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	68, 426
MwoI	GCNNNNNNNGC	1 cut(s)	519
NdeII	GATC	4 cut(s)	160, 434, 474, 574
NlaIV	GGNNCC	2 cut(s)	171, 309
NspV	TTCGAA	1 cut(s)	451
PctI	GAATGC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	66
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	492
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	66, 424
PspGI	CCWGG	2 cut(s)	66, 424
PspN4I	GGNNCC	2 cut(s)	171, 309
PspPI	GGNCC	4 cut(s)	169, 308, 319, 415
PspPPI	RGGWCCY	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	3 cut(s)	28, 94, 273
RsaNI	GTAC	3 cut(s)	27, 93, 272
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	4 cut(s)	160, 434, 474, 574
Sau96I	GGNCC	4 cut(s)	169, 308, 319, 415
ScaI	AGTACT	2 cut(s)	94, 273
ScrFI	CCNGG	2 cut(s)	68, 426
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	114
SfuI	TTCGAA	1 cut(s)	451
SinI	GGWCC	2 cut(s)	169, 308
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	3 cut(s)	17, 342, 453
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	66, 424
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	276, 356
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	451
TasI	AATT	3 cut(s)	17, 342, 453
TatI	WGTACW	3 cut(s)	26, 92, 271
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	228, 431
TspRI	CASTG	1 cut(s)	339
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	2 cut(s)	169, 308
XspI	CTAG	1 cut(s)	410
ZrmI	AGTACT	2 cut(s)	94, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.