Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2621059 .. 2621475

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATGGACGTTGCAGGACACCAGATCTGCGGAATCTCATTTTACCTAAGGAGTTGAAGAACTATATATTTGGCAAGTTGGCGCCCAACTGGAAGAATTTGAGGAAAGTACGCATATACATTTCTGCTTATAATTTTGTTGCTCTCCAAGCTAATTGCAAATTTATATGTGAGCTCAATTTGTATGGACTTATGGACGAGAATTTAGCATCCATGCTCTCTAAATTTTTTCCAAATCTCAAGTCTCTAGAGATTCGTGGGTGTACAATGTCGAACCATGTCCTCAGAATCATATCGGATGGTCATAAGAATCTTGAGCTGCTTGATACACAACAGTACTTCTACCATTTTGCTGAGGCTCATGTCGAATCAAGTTTGAAACCAGAGATGTCAGGAATTATCAAGCAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

139

Amino Acids

16.06

Weight (kDa)

9.32

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	82
AciI	CCGC	1 cut(s)	31
AcsI	RAATTY	4 cut(s)	97, 161, 202, 224
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	3 cut(s)	111, 265, 338
AgsI	TTSAA	2 cut(s)	58, 379
AluBI	AGCT	3 cut(s)	152, 175, 319
AluI	AGCT	3 cut(s)	152, 175, 319
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	4 cut(s)	97, 161, 202, 224
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspLEI	GCGC	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	86
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
BmcAI	AGTACT	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	224, 335
BsaHI	GRCGYC	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	95
Bse21I	CCTNAGG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	10, 209, 304
BseMII	CTCAG	2 cut(s)	298, 345
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	306
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	297, 346
BspLI	GGNNCC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	48, 284, 354
BstF5I	GGATG	3 cut(s)	10, 209, 304
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	10, 209, 304
CfoI	GCGC	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	110, 264, 337
CviAII	CATG	3 cut(s)	214, 278, 362
CviJI	RGCY	4 cut(s)	152, 175, 319, 359
CviKI_1	RGCY	4 cut(s)	152, 175, 319, 359
CviQI	GTAC	3 cut(s)	110, 264, 337
DdeI	CTNAG	3 cut(s)	48, 284, 354
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
FaeI	CATG	3 cut(s)	217, 281, 365
FatI	CATG	3 cut(s)	213, 277, 361
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	3 cut(s)	17, 196, 311
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	86
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	217, 281, 365
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	5 cut(s)	34, 253, 288, 310, 368
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	287, 298
Hpy188III	TCNNGA	3 cut(s)	248, 314, 393
Hpy8I	GTNNAC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	15, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	3 cut(s)	48, 284, 354
HpySE526I	ACGT	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	217, 281, 365
HspAI	GCGC	1 cut(s)	83
KasI	GGCGCC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	36, 76, 378, 396
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	10
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	2 cut(s)	70, 106
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	8 cut(s)	97, 133, 154, 161, 178, 202, 224, 396
Mly113I	GGCGCC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	96, 293, 349
MwoI	GCNNNNNNNGC	1 cut(s)	149
NarI	GGCGCC	1 cut(s)	83
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	217, 281, 365
NlaIV	GGNNCC	1 cut(s)	84
PfeI	GAWTC	5 cut(s)	34, 253, 288, 310, 368
PkrI	GCNGC	1 cut(s)	321
PluTI	GGCGCC	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	3 cut(s)	111, 265, 338
RsaNI	GTAC	3 cut(s)	110, 264, 337
SacI	GAGCTC	1 cut(s)	177
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	1 cut(s)	25
ScaI	AGTACT	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	5 cut(s)	13, 49, 154, 177, 321
SfaNI	GCATC	1 cut(s)	218
SfoI	GGCGCC	1 cut(s)	84
SmlI	CTYRAG	2 cut(s)	239, 314
SmoI	CTYRAG	2 cut(s)	239, 314
Sse9I	AATT	8 cut(s)	97, 133, 154, 161, 178, 202, 224, 396
SsiI	CCGC	1 cut(s)	31
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	336
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	272, 366
TasI	AATT	8 cut(s)	97, 133, 154, 161, 178, 202, 224, 396
TatI	WGTACW	2 cut(s)	263, 336
TfiI	GAWTC	5 cut(s)	34, 253, 288, 310, 368
TseI	GCWGC	1 cut(s)	319
XapI	RAATTY	4 cut(s)	97, 161, 202, 224
XbaI	TCTAGA	1 cut(s)	247
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.