Rh2BG581800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004529
Physical Location & Seq
Forward (+)
79820453 .. 79822601
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG581800.1

Sequence Viewer

Length: 408 bp
ATGAACAGCAGCCGTTGGATGAATGAGAGGGCTGAGGTTAAACCCTTTTTAATACGACATCTTGGGTATGTCGTTTCTCATTTTTTGGGTGTTAAACCCTTCGTTTGCTCTTCTTCTGATCTTTGCAATCTCTGTAAGGTTCTTCTCCGTGTGCCCACCACAGGAGCAGATTTTGAACTAGAAAGGTGGTCAATCATGATGATAGTGAGCAACATGGATAACGACTACACGCGGATTGAAATTAGAGAAGATGAAGGGAATTTGATAGTAGCAAATAATGTGGAGGGTCAAATTATGAGTGAAAATAGAAATGATGAAGATGAATTATTAGCATCATCGATTCCAGGTAAGTTTTTAGAACCACATCCATCACCACCTTGCATGTTGAAAATTCCCAAGATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.41

Weight (kDa)

5.17

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 232
AciI CCGC 1 cut(s) 232
AcsI RAATTY 2 cut(s) 259, 390
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 3 cut(s) 176, 239, 388
AjnI CCWGG 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 259, 390
AsuHPI GGTGA 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 21
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 345
BfaI CTAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 341, 390
Bpu10I CCTNAGC 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 338
BseGI GGATG 2 cut(s) 24, 364
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 1 cut(s) 338
BspFNI CGCG 1 cut(s) 232
BspHI TCATGA 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 115
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 24, 364
BstFNI CGCG 1 cut(s) 232
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 156
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 338
BsuTUI ATCGAT 1 cut(s) 338
BtsCI GGATG 2 cut(s) 24, 364
CciI TCATGA 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 338
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 3 cut(s) 196, 214, 382
CviJI RGCY 2 cut(s) 12, 32
CviKI_1 RGCY 2 cut(s) 12, 32
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 3 cut(s) 199, 217, 385
FaiI YATR 5 cut(s) 69, 197, 215, 296, 383
FatI CATG 3 cut(s) 195, 213, 381
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 2 cut(s) 31, 351
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 10
Hin1II CATG 3 cut(s) 199, 217, 385
HinfI GANTC 1 cut(s) 340
HphI GGTGA 1 cut(s) 363
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 109, 248
HpyCH4V TGCA 2 cut(s) 126, 381
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 3 cut(s) 199, 217, 385
Kzo9I GATC 1 cut(s) 118
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 3 cut(s) 147, 330, 357
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 2 cut(s) 341, 390
MaeI CTAG 1 cut(s) 179
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 5 cut(s) 102, 105, 134, 260, 329
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 5 cut(s) 240, 259, 291, 323, 390
MnlI CCTC 3 cut(s) 21, 28, 277
MseI TTAA 3 cut(s) 39, 50, 93
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 1 cut(s) 232
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 199, 217, 385
NspI RCATGY 1 cut(s) 385
PagI TCATGA 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 3 cut(s) 39, 50, 93
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 156
SetI ASST 5 cut(s) 39, 141, 188, 349, 379
SfaNI GCATC 2 cut(s) 341, 390
Sse9I AATT 5 cut(s) 240, 259, 291, 323, 390
SsiI CCGC 1 cut(s) 232
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 343
TaqI TCGA 1 cut(s) 338
TasI AATT 5 cut(s) 240, 259, 291, 323, 390
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 3 cut(s) 39, 50, 93
Tru9I TTAA 3 cut(s) 39, 50, 93
TseI GCWGC 1 cut(s) 9
TspDTI ATGAA 5 cut(s) 17, 35, 267, 330, 336
TspGWI ACGGA 1 cut(s) 137
XapI RAATTY 2 cut(s) 259, 390
XceI RCATGY 1 cut(s) 385
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.