Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2261509 .. 2262132

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTGAATGTCTATTTCTTTTGTTTTCTTATTCATATCAGGATCAGGCTAGGTCTCTCAACTTTGATCATGTCGGTTAGAGGTCAATTACAAAGTACAACAGGTATTCCAAAGGCAGTCAGTAGCATAAAGCTCCTGGACGTGCTACTGGAAATCCTCAGTACTTGGGATTTGGAAACTGCTACCGCCGGAAGCGTCCGCCGGCATCTGGAGAAGGATTTTGGGGCTGATCTATCGGACCCAAAATATCGTATCATCAAAGAAAAAATCGACGTCTTTTTTGAGGAAGGGGAAGAGGATGAGAATGAAGGTAAAGGTAGAAGAAGAAGAAAGAGAAAGAGAAACGAGAAAGAGATATGTATAGTGTCTCCACAGCTTCAAGACATTGTTGGAGAGGGTCCTGAAATGGCCCGAGCCAAGGCAGTGAAGAAAATTGTGGCTTATGGTCGGGAAAAGGGTTTGCATAAAAACAAGTCTATTATATATACTGATGATAAATTAGAGGCCCTTTTTCCTGGCAGGAAATCTATTCATATATTTCGAATTGATAACCTATTGGCCAAGAACAGTCATATACAGCCGCTTAAAGGTATGTTATTTTCTTATCTCCTTGCATTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

207

Amino Acids

23.79

Weight (kDa)

9.54

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	45 - 94	5.6e-09	DEK C terminal domain
SWIB	PF02201	119 - 188	2.5e-13	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AciI	CCGC	3 cut(s)	186, 199, 581
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	2 cut(s)	97, 163
AfiI	CCNNNNNNNGG	3 cut(s)	208, 418, 587
AgsI	TTSAA	2 cut(s)	7, 380
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	135, 514
AluBI	AGCT	2 cut(s)	133, 376
AluI	AGCT	2 cut(s)	133, 376
Alw26I	GTCTC	2 cut(s)	59, 372
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	3 cut(s)	408, 504, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspS9I	GGNCC	4 cut(s)	238, 398, 409, 505
AsuII	TTCGAA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	2 cut(s)	238, 398
BalI	TGGCCA	1 cut(s)	560
BciT130I	CCWGG	2 cut(s)	137, 516
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	59, 372
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	582
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	137, 516
Bme18I	GGWCC	2 cut(s)	238, 398
BmeT110I	CYCGRG	1 cut(s)	411
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	4 cut(s)	238, 398, 409, 505
BmiI	GGNNCC	2 cut(s)	240, 399
BmrFI	CCNGG	2 cut(s)	137, 516
BmsI	GCATC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 418, 587
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	137, 516
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	3 cut(s)	208, 418, 587
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	410, 506, 560
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	189, 202
BslI	CCNNNNNNNGG	3 cut(s)	208, 418, 587
BsmAI	GTCTC	2 cut(s)	59, 372
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	3 cut(s)	410, 506, 560
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	411
Bsp119I	TTCGAA	1 cut(s)	541
Bsp143I	GATC	3 cut(s)	42, 66, 229
BspACI	CCGC	3 cut(s)	186, 199, 581
BspANI	GGCC	3 cut(s)	410, 506, 560
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	240, 399
BspPI	GGATC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	3 cut(s)	42, 66, 229
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	137, 516
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	273
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	3 cut(s)	45, 69, 232
BstMAI	GTCTC	2 cut(s)	59, 372
BstMBI	GATC	3 cut(s)	42, 66, 229
BstNI	CCWGG	2 cut(s)	137, 516
BstSCI	CCNGG	2 cut(s)	135, 514
BsuRI	GGCC	3 cut(s)	410, 506, 560
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	4 cut(s)	238, 398, 409, 505
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	96, 162
CviAII	CATG	1 cut(s)	70
CviQI	GTAC	2 cut(s)	96, 162
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	3 cut(s)	44, 68, 231
DpnII	GATC	3 cut(s)	42, 66, 229
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	238, 398
Eco88I	CYCGRG	1 cut(s)	411
EcoO109I	RGGNCCY	2 cut(s)	398, 505
EcoRII	CCWGG	2 cut(s)	135, 514
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	1 cut(s)	73
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	581
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	1 cut(s)	581
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	581
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	410, 506, 560
HapII	CCGG	2 cut(s)	189, 202
HgaI	GACGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	73
HpaII	CCGG	2 cut(s)	189, 202
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	5 cut(s)	40, 209, 380, 401, 449
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	208, 281, 302
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	2 cut(s)	141, 273
HpyCH4V	TGCA	2 cut(s)	463, 614
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	2 cut(s)	141, 273
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	201
KroNI	GCCGGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	42, 66, 229
LmnI	GCTCC	1 cut(s)	138
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	141, 273
MalI	GATC	3 cut(s)	44, 68, 231
MboI	GATC	3 cut(s)	42, 66, 229
MboII	GAAGA	5 cut(s)	305, 333, 336, 339, 439
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	4 cut(s)	86, 432, 497, 543
MluNI	TGGCCA	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	6 cut(s)	74, 167, 277, 289, 388, 496
Mox20I	TGGCCA	1 cut(s)	560
MroNI	GCCGGC	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	619
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	2 cut(s)	189, 202
MspR9I	CCNGG	2 cut(s)	137, 516
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	2 cut(s)	137, 516
NaeI	GCCGGC	1 cut(s)	203
NdeII	GATC	3 cut(s)	42, 66, 229
NgoMIV	GCCGGC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	240, 399
NspV	TTCGAA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	614
PdiI	GCCGGC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	582
PpuMI	RGGWCCY	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	135, 514
PspGI	CCWGG	2 cut(s)	135, 514
PspN4I	GGNNCC	2 cut(s)	240, 399
PspPI	GGNCC	4 cut(s)	238, 398, 409, 505
PspPPI	RGGWCCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	97, 163
RsaNI	GTAC	2 cut(s)	96, 162
RseI	CAYNNNNRTG	1 cut(s)	619
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	1 cut(s)	581
Sau3AI	GATC	3 cut(s)	42, 66, 229
Sau96I	GGNCC	4 cut(s)	238, 398, 409, 505
ScaI	AGTACT	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	137, 516
SfaNI	GCATC	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	541
SinI	GGWCC	2 cut(s)	238, 398
SmiMI	CAYNNNNRTG	1 cut(s)	619
Sse9I	AATT	4 cut(s)	86, 432, 497, 543
SsiI	CCGC	3 cut(s)	186, 199, 581
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	135, 514
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	2 cut(s)	144, 276
TaqI	TCGA	2 cut(s)	270, 541
TasI	AATT	4 cut(s)	86, 432, 497, 543
TatI	WGTACW	2 cut(s)	95, 161
TauI	GCSGC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	429
TspDTI	ATGAA	3 cut(s)	23, 321, 521
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	2 cut(s)	238, 398
XspI	CTAG	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	274
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.