Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2215219 .. 2220373

Gene Structure 5155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG032000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGTCGGTTAGAGGTCAATTACAAAGTACAACAGGTATTCCAAAGGCAGTCAGTAGCATAAGGCTCCTGGACGTGCTACTGGAAATCCTCAGTACTTGGGATTTGGAAACGGCTACCGCCGGAAGCGTCCGCCGGCATCTGGAGAAGGATTTTGGGGCTGATCTATCGGACCCAAAATATCGTATCATCAAAGAAAAAATCGACGTCTTTTTTGAGGAAGGGGAAGAGGATGAGAATGAAGGTAAAGGTAGAAGAAGAAGAAAGAGAAAGAGAAACGAGAAAGAGATATGTATAGTGTCTCCACAGCTTCAAGACATTGTTGGAGAGGGTCCTGAAATGGCCCGAGCCAAGGCAGTGAAGAAAATTGTGGCTTATGGTCGGGAAAAGGGTTTGCATAAAAACAAGTCTATTATATATACTGATGATAAACTAGAGGCCCTTTTTCCTGGCAGGAAATCTGTTCATATATTTCGAATTGATAACCTGTTGGCCAAGAACAGTCATATACAGCCGCTTAAAGTTAAGAAGCTGTGCAAAGAATGCAAGGTGAGGAGGACGAGGACGAGGAGGGAAAATGAGACTTGTGAATGTGATCAAATTGGGGTGAAAAGTCAGAGGAAGGATTCCCAACAGAAACATAACCTAGCAGAGGAAGATATAAGATCGTGGGATACATTGCCACACGATATTCTGGTGAAAATCATTGATTTACTTTGCGGTCCACTCAAGTATTGGACACCCATCTCACCAGCTTTCTCCACGCGTTACGCGTCCGTCAGCCGCTCATGGAAATTGGCAGTCCTTGATCTAGTGTTTCCACCTAGTGATGTGCTTGATCTGCGAGTCCTTGATTCACATCCCTGGAAATCTTGCCATAAGATGTTCTTTCATTACCTCAGGATTGCCTTTAAATGCCGACCCACCAGCGGTTGGACAACACTATACTTTCCCAACGAGACTATATTTGCCGAACGTCCCTTTCTTCAAAATAACACTTTTATGATCAAAAATGATATCCTGACTTTGATCGCTGAGAAGACACCAGGACTGCGGAATCTCATTTTACCTAGGGAGTTGAAGAACTATATATTTGGCAAGTTGGCGCCTAACTGGAAGAATTTGAGAAAAGTACGCATATACATTTCTGCTTATAATTTTGTTGCTCTCCAAGCTAATTGCAAATTTATATGTGAGCTCAATTTGTATGGACGCATGGACGAGAATTTAGCATCCATGCTCGCTAAATTTTTTCCAGATCTCAAGTCTCTAGAGATTAGTGGGTGTACAATGTCGAACCGTGCCCTGAGAATCATATCGGATGGTCACAAGAATCTTGAGCTACTTGATACACAACAGCACTTCTACCATTTTGCTGAGGCTCACGTCGAATCAAGTTCGAAACCAGAGATAACCTCCCGTTCGGAGTGTTCAAGCCAAAACCGGCTTCAACGGCTCGACCGGGCGTGGTCATCGGACGATTATGTGTTGGACTTGTCAGCAATCGCAGCCGCCGGTCCCTTCAACGGTCCGGTCCTCAGAAACTCCGATTGCTTTTATCAGCCTAATTTGAACAAGTTCTTGGCCTTGGGACGACCTGCTTGGAAGGAAGCACGTGCTACACTTCAGAAGCTACTTTCATGTTCGACCCACCAATTGCATATCATGGACGAGCTTCGTCGATTATTATCTCTGGAACTGACATTACTCGACCCAGGTCAATCAGAGATGTATCTCTTGAGACATTTTTACGTCCAAGTTAGGGCTGCTGTAGTTGGTCCTGGAAATGAATTAGGGAATCCGGTGGATGTGAATGAGGCAGCAGATCACATTTTTGGACTTGTCTTGATGAATGGCTGGATTGCTAGAGATATCCAGGCAACGCAATTTATTCCCAGTGTGCCTTGGAAAAAGTTTTGGAACTACAATATCCCCTTGGATAGTGACACTCGAAGGTCTAGAACCATTTTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

657

Amino Acids

75.61

Weight (kDa)

9.26

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	25 - 71	4.3e-08	DEK C terminal domain
SWIB	PF02201	96 - 165	1.4e-12	SWIB/MDM2 domain
FAA_hydrolase_N	PF09298	492 - 559	1.9e-13	Fumarylacetoacetase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1152
AatII	GACGTC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	1603
AccB1I	GGYRCC	1 cut(s)	1102
AccB7I	CCANNNNNTGG	1 cut(s)	930
AccBSI	CCGCTC	1 cut(s)	783
AccII	CGCG	2 cut(s)	763, 770
AciI	CCGC	8 cut(s)	117, 130, 512, 717, 781, 927, 1051, 1509
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	4 cut(s)	1117, 1181, 1222, 1244
AcuI	CTGAAG	1 cut(s)	1607
AcvI	CACGTG	1 cut(s)	1613
AcyI	GRCGYC	2 cut(s)	204, 1103
AdeI	CACNNNGTG	1 cut(s)	824
AfaI	GTAC	4 cut(s)	28, 94, 1131, 1285
AfiI	CCNNNNNNNGG	7 cut(s)	139, 349, 649, 926, 930, 1523, 1759
AflIII	ACRYGT	2 cut(s)	761, 768
AgsI	TTSAA	7 cut(s)	311, 986, 1078, 1431, 1448, 1522, 1570
AjiI	CACGTC	2 cut(s)	73, 1384
AjnI	CCWGG	7 cut(s)	66, 445, 860, 1042, 1711, 1777, 1872
AjuI	GAANNNNNNNTTGG	4 cut(s)	1428, 1460, 1562, 1594
AluBI	AGCT	8 cut(s)	307, 529, 752, 1172, 1195, 1339, 1630, 1672
AluI	AGCT	8 cut(s)	307, 529, 752, 1172, 1195, 1339, 1630, 1672
Alw21I	GWGCWC	1 cut(s)	1197
Alw26I	GTCTC	5 cut(s)	303, 572, 950, 1269, 1732
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	4 cut(s)	339, 435, 489, 1581
ApeKI	GCWGC	3 cut(s)	1505, 1763, 1817
ApoI	RAATTY	4 cut(s)	1117, 1181, 1222, 1244
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
Asp700I	GAANNNNTTC	1 cut(s)	1574
AspA2I	CCTAGG	1 cut(s)	1067
AspLEI	GCGC	1 cut(s)	1105
AspS9I	GGNCC	9 cut(s)	169, 329, 340, 436, 719, 1514, 1526, 1531, 1775
AsuC2I	CCSGG	1 cut(s)	1460
AsuHPI	GGTGA	4 cut(s)	559, 616, 706, 738
AsuII	TTCGAA	2 cut(s)	472, 1397
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	7 cut(s)	169, 329, 719, 1514, 1526, 1531, 1775
AvrII	CCTAGG	1 cut(s)	1067
AxyI	CCTNAGG	1 cut(s)	896
BaeGI	GKGCMC	1 cut(s)	1303
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	1102
BanII	GRGCYC	1 cut(s)	1197
BbrPI	CACGTG	1 cut(s)	1613
BbsI	GAAGAC	1 cut(s)	1043
Bbv12I	GWGCWC	1 cut(s)	1197
BbvCI	CCTCAGC	1 cut(s)	1374
BbvI	GCAGC	3 cut(s)	1517, 1750, 1829
BccI	CCATC	2 cut(s)	749, 1313
BceAI	ACGGC	2 cut(s)	126, 1466
BciT130I	CCWGG	7 cut(s)	68, 447, 862, 1044, 1713, 1779, 1874
BciVI	GTATCC	1 cut(s)	664
BclI	TGATCA	2 cut(s)	592, 1002
BcnI	CCSGG	1 cut(s)	1460
BcoDI	GTCTC	5 cut(s)	303, 572, 950, 1269, 1732
BfaI	CTAG	8 cut(s)	431, 644, 809, 822, 1068, 1268, 1863, 1956
BfmI	CTRYAG	1 cut(s)	1767
BfoI	RGCGCY	1 cut(s)	1106
BfuAI	ACCTGC	1 cut(s)	1603
BfuI	GTATCC	1 cut(s)	664
BglII	AGATCT	1 cut(s)	1255
BisI	GCNGC	6 cut(s)	512, 781, 1506, 1509, 1764, 1818
BlnI	CCTAGG	1 cut(s)	1067
BlsI	GCNGC	6 cut(s)	513, 782, 1507, 1510, 1765, 1819
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	8 cut(s)	68, 447, 862, 1044, 1460, 1713, 1779, 1874
Bme18I	GGWCC	7 cut(s)	169, 329, 719, 1514, 1526, 1531, 1775
BmeT110I	CYCGRG	1 cut(s)	342
BmgBI	CACGTC	2 cut(s)	73, 1384
BmgT120I	GGNCC	9 cut(s)	169, 329, 340, 436, 719, 1514, 1526, 1531, 1775
BmiI	GGNNCC	5 cut(s)	65, 171, 330, 1104, 1516
BmrFI	CCNGG	8 cut(s)	68, 447, 862, 1044, 1460, 1713, 1779, 1874
BmrI	ACTGGG	1 cut(s)	1887
BmsI	GCATC	2 cut(s)	145, 1238
BmuI	ACTGGG	1 cut(s)	1887
BoxI	GACNNNNGTC	1 cut(s)	1713
BpiI	GAAGAC	1 cut(s)	1043
BplI	GAGNNNNNCTC	2 cut(s)	1397, 1429
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	1374
Bpu14I	TTCGAA	2 cut(s)	472, 1397
BpuEI	CTTGAG	4 cut(s)	710, 1244, 1355, 1756
BpuMI	CCSGG	1 cut(s)	1460
BsaAI	YACGTR	1 cut(s)	1613
BsaBI	GATNNNNATC	2 cut(s)	855, 1684
BsaHI	GRCGYC	2 cut(s)	204, 1103
BsaJI	CCNNGG	7 cut(s)	348, 860, 1067, 1584, 1711, 1901, 1932
BsaWI	WCCGGW	2 cut(s)	1528, 1798
Bsc4I	CCNNNNNNNGG	7 cut(s)	139, 349, 649, 926, 930, 1523, 1759
Bse118I	RCCGGY	3 cut(s)	132, 1440, 1511
Bse1I	ACTGG	3 cut(s)	84, 1115, 1893
Bse21I	CCTNAGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	674
Bse8I	GATNNNNATC	2 cut(s)	855, 1684
BseBI	CCWGG	7 cut(s)	68, 447, 862, 1044, 1713, 1779, 1874
BseDI	CCNNGG	7 cut(s)	348, 860, 1067, 1584, 1711, 1901, 1932
BseGI	GGATG	5 cut(s)	235, 856, 1229, 1324, 1810
BseJI	GATNNNNATC	2 cut(s)	855, 1684
BseLI	CCNNNNNNNGG	7 cut(s)	139, 349, 649, 926, 930, 1523, 1759
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	6 cut(s)	103, 910, 1023, 1295, 1365, 1549
BseNI	ACTGG	3 cut(s)	84, 1115, 1893
BseRI	GAGGAG	2 cut(s)	565, 580
BseSI	GKGCMC	1 cut(s)	1303
BseXI	GCAGC	3 cut(s)	1517, 1750, 1829
Bsh1236I	CGCG	2 cut(s)	763, 770
Bsh1285I	CGRYCG	1 cut(s)	1459
BshFI	GGCC	4 cut(s)	341, 437, 491, 1583
BshNI	GGYRCC	1 cut(s)	1102
BsiEI	CGRYCG	1 cut(s)	1459
BsiHKAI	GWGCWC	1 cut(s)	1197
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	7 cut(s)	120, 133, 1441, 1459, 1512, 1529, 1799
BslFI	GGGAC	3 cut(s)	960, 1500, 1602
BslI	CCNNNNNNNGG	7 cut(s)	139, 349, 649, 926, 930, 1523, 1759
BsmAI	GTCTC	5 cut(s)	303, 572, 950, 1269, 1732
BsmFI	GGGAC	3 cut(s)	960, 1500, 1602
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	4 cut(s)	341, 437, 491, 1583
BsoBI	CYCGRG	1 cut(s)	342
Bsp119I	TTCGAA	2 cut(s)	472, 1397
Bsp1286I	GDGCHC	2 cut(s)	1197, 1303
Bsp1407I	TGTACA	1 cut(s)	1283
Bsp143I	GATC	9 cut(s)	160, 592, 662, 805, 835, 1002, 1026, 1255, 1822
BspACI	CCGC	8 cut(s)	117, 130, 512, 717, 781, 927, 1051, 1509
BspANI	GGCC	4 cut(s)	341, 437, 491, 1583
BspCNI	CTCAG	6 cut(s)	102, 909, 1024, 1296, 1366, 1548
BspFNI	CGCG	2 cut(s)	763, 770
BspLI	GGNNCC	5 cut(s)	65, 171, 330, 1104, 1516
BspMI	ACCTGC	1 cut(s)	1603
BspT104I	TTCGAA	2 cut(s)	472, 1397
BspT107I	GGYRCC	1 cut(s)	1102
BsrBI	CCGCTC	1 cut(s)	783
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	3 cut(s)	132, 1440, 1511
BsrGI	TGTACA	1 cut(s)	1283
BsrI	ACTGG	3 cut(s)	84, 1115, 1893
BssAI	RCCGGY	3 cut(s)	132, 1440, 1511
BssECI	CCNNGG	7 cut(s)	348, 860, 1067, 1584, 1711, 1901, 1932
BssMI	GATC	9 cut(s)	160, 592, 662, 805, 835, 1002, 1026, 1255, 1822
BssNI	GRCGYC	2 cut(s)	204, 1103
BssT1I	CCWWGG	5 cut(s)	348, 1067, 1584, 1901, 1932
Bst2UI	CCWGG	7 cut(s)	68, 447, 862, 1044, 1713, 1779, 1874
Bst4CI	ACNGT	3 cut(s)	500, 1298, 1526
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	2 cut(s)	204, 1103
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	1283
BstBAI	YACGTR	1 cut(s)	1613
BstBI	TTCGAA	2 cut(s)	472, 1397
BstC8I	GCNNGC	2 cut(s)	134, 1239
BstDEI	CTNAG	6 cut(s)	89, 896, 1032, 1304, 1374, 1535
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	5 cut(s)	235, 856, 1229, 1324, 1810
BstFNI	CGCG	2 cut(s)	763, 770
BstH2I	RGCGCY	1 cut(s)	1106
BstHHI	GCGC	1 cut(s)	1105
BstKTI	GATC	9 cut(s)	163, 595, 665, 808, 838, 1005, 1029, 1258, 1825
BstMAI	GTCTC	5 cut(s)	303, 572, 950, 1269, 1732
BstMBI	GATC	9 cut(s)	160, 592, 662, 805, 835, 1002, 1026, 1255, 1822
BstMCI	CGRYCG	1 cut(s)	1459
BstMWI	GCNNNNNNNGC	5 cut(s)	540, 838, 1169, 1450, 1505
BstNI	CCWGG	7 cut(s)	68, 447, 862, 1044, 1713, 1779, 1874
BstPAI	GACNNNNGTC	1 cut(s)	1713
BstSCI	CCNGG	8 cut(s)	66, 445, 860, 1042, 1458, 1711, 1777, 1872
BstSFI	CTRYAG	1 cut(s)	1767
BstSLI	GKGCMC	1 cut(s)	1303
BstUI	CGCG	2 cut(s)	763, 770
BstV1I	GCAGC	3 cut(s)	1517, 1750, 1829
BstV2I	GAAGAC	1 cut(s)	1043
BstX2I	RGATCY	1 cut(s)	1255
BstYI	RGATCY	1 cut(s)	1255
Bsu36I	CCTNAGG	1 cut(s)	896
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	4 cut(s)	341, 437, 491, 1583
BtrI	CACGTC	2 cut(s)	73, 1384
BtsCI	GGATG	5 cut(s)	235, 856, 1229, 1324, 1810
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	360, 1900
BveI	ACCTGC	1 cut(s)	1603
Cac8I	GCNNGC	2 cut(s)	134, 1239
CfoI	GCGC	1 cut(s)	1105
Cfr10I	RCCGGY	3 cut(s)	132, 1440, 1511
Cfr13I	GGNCC	9 cut(s)	169, 329, 340, 436, 719, 1514, 1526, 1531, 1775
CpoI	CGGWCCG	1 cut(s)	1526
CseI	GACGC	3 cut(s)	115, 759, 1218
Csp6I	GTAC	4 cut(s)	27, 93, 1130, 1284
CspI	CGGWCCG	1 cut(s)	1526
CviAII	CATG	5 cut(s)	786, 1213, 1234, 1638, 1663
CviQI	GTAC	4 cut(s)	27, 93, 1130, 1284
DdeI	CTNAG	6 cut(s)	89, 896, 1032, 1304, 1374, 1535
DinI	GGCGCC	1 cut(s)	1104
DpnI	GATC	9 cut(s)	162, 594, 664, 807, 837, 1004, 1028, 1257, 1824
DpnII	GATC	9 cut(s)	160, 592, 662, 805, 835, 1002, 1026, 1255, 1822
DraI	TTTAAA	1 cut(s)	910
DraIII	CACNNNGTG	1 cut(s)	824
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	1195
Eco130I	CCWWGG	5 cut(s)	348, 1067, 1584, 1901, 1932
Eco24I	GRGCYC	1 cut(s)	1197
Eco32I	GATATC	2 cut(s)	1015, 1870
Eco47I	GGWCC	7 cut(s)	169, 329, 719, 1514, 1526, 1531, 1775
Eco53kI	GAGCTC	1 cut(s)	1195
Eco57I	CTGAAG	1 cut(s)	1607
Eco72I	CACGTG	1 cut(s)	1613
Eco81I	CCTNAGG	1 cut(s)	896
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	1195
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoO109I	RGGNCCY	2 cut(s)	329, 436
EcoRII	CCWGG	7 cut(s)	66, 445, 860, 1042, 1711, 1777, 1872
EcoRV	GATATC	2 cut(s)	1015, 1870
EcoT14I	CCWWGG	5 cut(s)	348, 1067, 1584, 1901, 1932
EcoT38I	GRGCYC	1 cut(s)	1197
EgeI	GGCGCC	1 cut(s)	1104
EheI	GGCGCC	1 cut(s)	1104
ErhI	CCWWGG	5 cut(s)	348, 1067, 1584, 1901, 1932
FaeI	CATG	5 cut(s)	789, 1216, 1237, 1641, 1666
FalI	AAGNNNNNCTT	2 cut(s)	869, 901
FaqI	GGGAC	3 cut(s)	960, 1500, 1602
FatI	CATG	5 cut(s)	785, 1212, 1233, 1637, 1662
FbaI	TGATCA	2 cut(s)	592, 1002
Fnu4HI	GCNGC	6 cut(s)	512, 781, 1506, 1509, 1764, 1818
FokI	GGATG	5 cut(s)	242, 843, 1216, 1331, 1817
FriOI	GRGCYC	1 cut(s)	1197
Fsp4HI	GCNGC	6 cut(s)	512, 781, 1506, 1509, 1764, 1818
FspBI	CTAG	8 cut(s)	431, 644, 809, 822, 1068, 1268, 1863, 1956
GlaI	GCGC	1 cut(s)	1104
GluI	GCNGC	6 cut(s)	512, 781, 1506, 1509, 1764, 1818
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	1106
HaeIII	GGCC	4 cut(s)	341, 437, 491, 1583
HapII	CCGG	7 cut(s)	120, 133, 1441, 1459, 1512, 1529, 1799
HgaI	GACGC	3 cut(s)	115, 759, 1218
HhaI	GCGC	1 cut(s)	1105
Hin1I	GRCGYC	2 cut(s)	204, 1103
Hin1II	CATG	5 cut(s)	789, 1216, 1237, 1641, 1666
Hin6I	GCGC	1 cut(s)	1103
HinP1I	GCGC	1 cut(s)	1103
HinfI	GANTC	8 cut(s)	623, 843, 851, 1054, 1308, 1330, 1388, 1795
HpaII	CCGG	7 cut(s)	120, 133, 1441, 1459, 1512, 1529, 1799
HphI	GGTGA	4 cut(s)	559, 616, 706, 738
Hpy166II	GTNNAC	2 cut(s)	722, 1284
Hpy188I	TCNGA	9 cut(s)	169, 615, 1318, 1423, 1474, 1538, 1546, 1626, 1723
Hpy8I	GTNNAC	2 cut(s)	722, 1284
Hpy99I	CGWCG	3 cut(s)	206, 1388, 1680
HpyAV	CCTTC	7 cut(s)	139, 212, 233, 613, 1528, 1597, 1944
HpyCH4III	ACNGT	3 cut(s)	500, 1298, 1526
HpyCH4IV	ACGT	6 cut(s)	72, 204, 973, 1383, 1612, 1749
HpyCH4V	TGCA	5 cut(s)	394, 534, 543, 1179, 1657
HpyF10VI	GCNNNNNNNGC	5 cut(s)	540, 838, 1169, 1450, 1505
HpyF3I	CTNAG	6 cut(s)	89, 896, 1032, 1304, 1374, 1535
HpySE526I	ACGT	6 cut(s)	72, 204, 973, 1383, 1612, 1749
Hsp92I	GRCGYC	2 cut(s)	204, 1103
Hsp92II	CATG	5 cut(s)	789, 1216, 1237, 1641, 1666
HspAI	GCGC	1 cut(s)	1103
KasI	GGCGCC	1 cut(s)	1102
KroI	GCCGGC	1 cut(s)	132
KroNI	GCCGGC	1 cut(s)	134
Ksp22I	TGATCA	2 cut(s)	592, 1002
Kzo9I	GATC	9 cut(s)	160, 592, 662, 805, 835, 1002, 1026, 1255, 1822
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	3 cut(s)	1517, 1750, 1829
LweI	GCATC	2 cut(s)	145, 1238
MaeI	CTAG	8 cut(s)	431, 644, 809, 822, 1068, 1268, 1863, 1956
MaeII	ACGT	6 cut(s)	72, 204, 973, 1383, 1612, 1749
MaeIII	GTNAC	3 cut(s)	764, 1322, 1940
MalI	GATC	9 cut(s)	162, 594, 664, 807, 837, 1004, 1028, 1257, 1824
MbiI	CCGCTC	1 cut(s)	783
MboI	GATC	9 cut(s)	160, 592, 662, 805, 835, 1002, 1026, 1255, 1822
MfeI	CAATTG	1 cut(s)	1652
MflI	RGATCY	1 cut(s)	1255
MhlI	GDGCHC	2 cut(s)	1197, 1303
MlsI	TGGCCA	1 cut(s)	491
MluI	ACGCGT	2 cut(s)	761, 768
MluNI	TGGCCA	1 cut(s)	491
Mly113I	GGCGCC	1 cut(s)	1103
MlyI	GAGTC	1 cut(s)	852
MmeI	TCCRAC	3 cut(s)	301, 911, 1467
Mox20I	TGGCCA	1 cut(s)	491
MroNI	GCCGGC	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	1574
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	3 cut(s)	516, 522, 909
MslI	CAYNNNNRTG	1 cut(s)	998
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	927
MspI	CCGG	7 cut(s)	120, 133, 1441, 1459, 1512, 1529, 1799
MspR9I	CCNGG	8 cut(s)	68, 447, 862, 1044, 1460, 1713, 1779, 1874
MunI	CAATTG	1 cut(s)	1652
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	7 cut(s)	68, 447, 862, 1044, 1713, 1779, 1874
MvnI	CGCG	2 cut(s)	763, 770
MwoI	GCNNNNNNNGC	5 cut(s)	540, 838, 1169, 1450, 1505
NaeI	GCCGGC	1 cut(s)	134
NarI	GGCGCC	1 cut(s)	1103
NciI	CCSGG	1 cut(s)	1460
NdeII	GATC	9 cut(s)	160, 592, 662, 805, 835, 1002, 1026, 1255, 1822
NgoMIV	GCCGGC	1 cut(s)	132
NlaIII	CATG	5 cut(s)	789, 1216, 1237, 1641, 1666
NlaIV	GGNNCC	5 cut(s)	65, 171, 330, 1104, 1516
NmuCI	GTSAC	2 cut(s)	1322, 1940
NspV	TTCGAA	2 cut(s)	472, 1397
PcsI	WCGNNNNNNNCGW	1 cut(s)	767
PctI	GAATGC	1 cut(s)	545
PdiI	GCCGGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	1574
PfeI	GAWTC	7 cut(s)	623, 851, 1054, 1308, 1330, 1388, 1795
PflMI	CCANNNNNTGG	1 cut(s)	930
PfoI	TCCNGGA	2 cut(s)	66, 1777
PkrI	GCNGC	6 cut(s)	513, 782, 1507, 1510, 1765, 1819
PleI	GAGTC	1 cut(s)	851
PluTI	GGCGCC	1 cut(s)	1106
PmaCI	CACGTG	1 cut(s)	1613
PmlI	CACGTG	1 cut(s)	1613
PpsI	GAGTC	1 cut(s)	851
Ppu21I	YACGTR	1 cut(s)	1613
PpuMI	RGGWCCY	1 cut(s)	329
PshAI	GACNNNNGTC	1 cut(s)	1713
PsiI	TTATAA	1 cut(s)	1152
Psp124BI	GAGCTC	1 cut(s)	1197
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	7 cut(s)	66, 445, 860, 1042, 1711, 1777, 1872
PspCI	CACGTG	1 cut(s)	1613
PspGI	CCWGG	7 cut(s)	66, 445, 860, 1042, 1711, 1777, 1872
PspN4I	GGNNCC	5 cut(s)	65, 171, 330, 1104, 1516
PspPI	GGNCC	9 cut(s)	169, 329, 340, 436, 719, 1514, 1526, 1531, 1775
PspPPI	RGGWCCY	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	1686, 1718
PsuI	RGATCY	1 cut(s)	1255
RsaI	GTAC	4 cut(s)	28, 94, 1131, 1285
RsaNI	GTAC	4 cut(s)	27, 93, 1130, 1284
RseI	CAYNNNNRTG	1 cut(s)	998
Rsr2I	CGGWCCG	1 cut(s)	1526
RsrII	CGGWCCG	1 cut(s)	1526
SacI	GAGCTC	1 cut(s)	1197
SaqAI	TTAA	3 cut(s)	516, 522, 909
SatI	GCNGC	6 cut(s)	512, 781, 1506, 1509, 1764, 1818
Sau3AI	GATC	9 cut(s)	160, 592, 662, 805, 835, 1002, 1026, 1255, 1822
Sau96I	GGNCC	9 cut(s)	169, 329, 340, 436, 719, 1514, 1526, 1531, 1775
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	852
ScrFI	CCNGG	8 cut(s)	68, 447, 862, 1044, 1460, 1713, 1779, 1874
SduI	GDGCHC	2 cut(s)	1197, 1303
SfaNI	GCATC	2 cut(s)	145, 1238
SfcI	CTRYAG	1 cut(s)	1767
SfoI	GGCGCC	1 cut(s)	1104
SfuI	TTCGAA	2 cut(s)	472, 1397
SinI	GGWCC	7 cut(s)	169, 329, 719, 1514, 1526, 1531, 1775
SmiMI	CAYNNNNRTG	1 cut(s)	998
SmlI	CTYRAG	4 cut(s)	725, 1259, 1334, 1735
SmoI	CTYRAG	4 cut(s)	725, 1259, 1334, 1735
SsiI	CCGC	8 cut(s)	117, 130, 512, 717, 781, 927, 1051, 1509
SspDI	GGCGCC	1 cut(s)	1102
SspMI	CTAG	8 cut(s)	431, 644, 809, 822, 1068, 1268, 1863, 1956
SstI	GAGCTC	1 cut(s)	1197
StyD4I	CCNGG	8 cut(s)	66, 445, 860, 1042, 1458, 1711, 1777, 1872
StyI	CCWWGG	5 cut(s)	348, 1067, 1584, 1901, 1932
TaaI	ACNGT	3 cut(s)	500, 1298, 1526
TaiI	ACGT	6 cut(s)	75, 207, 976, 1386, 1615, 1752
TatI	WGTACW	3 cut(s)	26, 92, 1283
TauI	GCSGC	3 cut(s)	514, 783, 1511
TfiI	GAWTC	7 cut(s)	623, 851, 1054, 1308, 1330, 1388, 1795
Tru1I	TTAA	3 cut(s)	516, 522, 909
Tru9I	TTAA	3 cut(s)	516, 522, 909
TscAI	CASTG	2 cut(s)	360, 1900
TseFI	GTSAC	2 cut(s)	1322, 1940
TseI	GCWGC	3 cut(s)	1505, 1763, 1817
Tsp45I	GTSAC	2 cut(s)	1322, 1940
TspDTI	ATGAA	6 cut(s)	252, 452, 878, 1626, 1800, 1862
TspGWI	ACGGA	1 cut(s)	763
TspRI	CASTG	2 cut(s)	360, 1900
Van91I	CCANNNNNTGG	1 cut(s)	930
VpaK11BI	GGWCC	7 cut(s)	169, 329, 719, 1514, 1526, 1531, 1775
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	4 cut(s)	1117, 1181, 1222, 1244
XbaI	TCTAGA	2 cut(s)	1267, 1955
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XmaJI	CCTAGG	1 cut(s)	1067
XmnI	GAANNNNTTC	1 cut(s)	1574
XspI	CTAG	8 cut(s)	431, 644, 809, 822, 1068, 1268, 1863, 1956
ZraI	GACGTC	1 cut(s)	205
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.