Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2208995 .. 2213143

Gene Structure 4149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG034600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGATCGAATGGCGTGCAACTCAATCATTGCCTGCAACTCACAGGTATTCTTAGCACATGGGATCTTGAGACTGCCACCGCCGCAAGTGTCCGGCGGCATCTGGAGGAGGATTTTCGGGTCCATCTTTCGAATACCATCCAAGAACAAATCGACATCTTCTTTGATGATGGGAAAGAGGATGAGATTGAAGGCAAAGGTAGAAGAACAAGACCGGAGATATGTACGTTGTCTCCACAGCTTCAAGACTTTGTTGGAGGGGGACCCGAAATGGCCCGTGCGGAGGCAATGAAGAAAATTGTGGCTTATATCCGGGAAAAGGGTTTGCAGATGAATTGTAACCATCTCATATTTGCAGATGATAACCTAAAATCCCTTTTTCCTGGCTGTACTAAATCTATCAGTATGTTTCAAATACATGCCCTCCTATCCAAGGGTTTGCAGATGAATTGTAACCATCTCATATTTGCAAATGATAAACTAAAGTCCCTTTTTCCTGGCTGTACTAAATCTATCTGTATGTTTCAAATACATGACCTCCTATCCAAGCATGGTCATCTACAACCGCTTAAAGCTGACAAAGATGAGCGCGGGGTGAGGAAGACGAACGATGAAGCAATATGTAAAAAATCTGAGAATTGTGAAGGTGATCAAGATAGGGTGAAGAAGAAGGGGAAGAATGTTACAGAGGAACATGTGAGACCGTGGGATAAAATGCCACAAGCTATTATGGTGAAAATCTTAAAGCTATTACCATTTCCGGTTTGGTCATTCCACCCCTGCTATGTTTGCAGTTCATGGCAAGTGGCAGTCGCCGATGTAATGTTTCCACCTGAAAACCGTGAGCTTAATCTGCTAGTCCTTGATTCATATCCCTGGATATTCAGGCAAAGGTGGTTCCTTAAATACCTCAGGATTGCCTTAAATTCTCCATCCGCCATCTGTTGGAGAACGCTTTACTTGCCCCAGACTGCATTCATCAAAAATGATATCCTTAGTGAGATTGCTGAAAAGTATGCTCGAAACTTTACTTTAATTCCCTCTTTAATCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

351

Amino Acids

40.29

Weight (kDa)

8.52

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	15 - 54	4.7e-06	DEK C terminal domain
SWIB	PF02201	74 - 145	1.4e-16	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	945
AccII	CGCG	1 cut(s)	591
AciI	CCGC	7 cut(s)	81, 84, 97, 281, 566, 591, 936
AclWI	GGATC	2 cut(s)	13, 72
AcsI	RAATTY	1 cut(s)	925
AfaI	GTAC	3 cut(s)	226, 391, 505
AfiI	CCNNNNNNNGG	4 cut(s)	283, 319, 433, 945
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	4 cut(s)	191, 245, 413, 527
AjnI	CCWGG	3 cut(s)	382, 496, 875
AluBI	AGCT	5 cut(s)	241, 575, 725, 748, 847
AluI	AGCT	5 cut(s)	241, 575, 725, 748, 847
Alw26I	GTCTC	3 cut(s)	65, 237, 694
AlwI	GGATC	2 cut(s)	13, 72
AoxI	GGCC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	925
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	3 cut(s)	121, 263, 274
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	4 cut(s)	607, 659, 673, 745
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	121, 263
AxyI	CCTNAGG	1 cut(s)	911
BbsI	GAAGAC	1 cut(s)	608
BccI	CCATC	7 cut(s)	132, 146, 164, 351, 465, 940, 947
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	3 cut(s)	384, 498, 877
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	3 cut(s)	65, 237, 694
BfaI	CTAG	1 cut(s)	857
BisI	GCNGC	2 cut(s)	84, 98
BlsI	GCNGC	2 cut(s)	85, 99
Bme1390I	CCNGG	4 cut(s)	314, 384, 498, 877
Bme18I	GGWCC	2 cut(s)	121, 263
BmgT120I	GGNCC	3 cut(s)	121, 263, 274
BmiI	GGNNCC	4 cut(s)	122, 264, 265, 899
BmrFI	CCNGG	4 cut(s)	314, 384, 498, 877
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	870
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	432, 704, 875
BsaWI	WCCGGW	2 cut(s)	214, 760
BsaXI	ACNNNNNCTCC	6 cut(s)	217, 247, 408, 438, 522, 552
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 319, 433, 945
Bse21I	CCTNAGG	1 cut(s)	911
Bse3DI	GCAATG	2 cut(s)	28, 294
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	3 cut(s)	384, 498, 877
BseDI	CCNNGG	3 cut(s)	432, 704, 875
BseGI	GGATG	3 cut(s)	138, 187, 932
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	4 cut(s)	283, 319, 433, 945
BseMI	GCAATG	2 cut(s)	28, 294
BseMII	CTCAG	2 cut(s)	624, 925
BseRI	GAGGAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	94, 215, 313, 761
BslFI	GGGAC	2 cut(s)	276, 472
BslI	CCNNNNNNNGG	4 cut(s)	283, 319, 433, 945
BsmAI	GTCTC	3 cut(s)	65, 237, 694
BsmFI	GGGAC	2 cut(s)	276, 472
BsmI	GAATGC	1 cut(s)	974
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	694
Bsp119I	TTCGAA	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	5, 64, 649
BspACI	CCGC	7 cut(s)	81, 84, 97, 281, 566, 591, 936
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	625, 924
BspFNI	CGCG	1 cut(s)	591
BspLI	GGNNCC	4 cut(s)	122, 264, 265, 899
BspPI	GGATC	2 cut(s)	13, 72
BspT104I	TTCGAA	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	694
BsrDI	GCAATG	2 cut(s)	28, 294
BssECI	CCNNGG	3 cut(s)	432, 704, 875
BssMI	GATC	3 cut(s)	5, 64, 649
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	3 cut(s)	384, 498, 877
Bst4CI	ACNGT	2 cut(s)	705, 842
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	17, 35
BstDEI	CTNAG	4 cut(s)	53, 633, 911, 995
BstDSI	CCRYGG	1 cut(s)	704
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	138, 187, 932
BstFNI	CGCG	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	3 cut(s)	8, 67, 652
BstMAI	GTCTC	3 cut(s)	65, 237, 694
BstMBI	GATC	3 cut(s)	5, 64, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 789, 853, 961
BstNI	CCWGG	3 cut(s)	384, 498, 877
BstNSI	RCATGY	2 cut(s)	422, 698
BstSCI	CCNGG	4 cut(s)	312, 382, 496, 875
BstUI	CGCG	1 cut(s)	591
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	911
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	704
BtsCI	GGATG	3 cut(s)	138, 187, 932
Cac8I	GCNNGC	2 cut(s)	17, 35
CfoI	GCGC	1 cut(s)	591
Cfr13I	GGNCC	3 cut(s)	121, 263, 274
Csp6I	GTAC	3 cut(s)	225, 390, 504
CviAII	CATG	6 cut(s)	60, 419, 533, 551, 695, 798
CviJI	RGCY	9 cut(s)	241, 275, 305, 387, 501, 575, 725, 748, 847
CviKI_1	RGCY	9 cut(s)	241, 275, 305, 387, 501, 575, 725, 748, 847
CviQI	GTAC	3 cut(s)	225, 390, 504
DdeI	CTNAG	4 cut(s)	53, 633, 911, 995
DpnI	GATC	3 cut(s)	7, 66, 651
DpnII	GATC	3 cut(s)	5, 64, 649
EciI	GGCGGA	1 cut(s)	925
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	991
Eco47I	GGWCC	2 cut(s)	121, 263
Eco81I	CCTNAGG	1 cut(s)	911
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	3 cut(s)	382, 496, 875
EcoRV	GATATC	1 cut(s)	991
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	6 cut(s)	63, 422, 536, 554, 698, 801
FaqI	GGGAC	2 cut(s)	276, 472
FatI	CATG	6 cut(s)	59, 418, 532, 550, 694, 797
FauI	CCCGC	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	2 cut(s)	84, 98
FokI	GGATG	3 cut(s)	125, 194, 919
Fsp4HI	GCNGC	2 cut(s)	84, 98
FspBI	CTAG	1 cut(s)	857
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	2 cut(s)	84, 98
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	4 cut(s)	94, 215, 313, 761
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	6 cut(s)	63, 422, 536, 554, 698, 801
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	866
HpaII	CCGG	4 cut(s)	94, 215, 313, 761
HphI	GGTGA	4 cut(s)	607, 659, 673, 745
Hpy188I	TCNGA	2 cut(s)	634, 1052
Hpy188III	TCNNGA	5 cut(s)	68, 104, 245, 653, 913
HpyAV	CCTTC	3 cut(s)	185, 638, 664
HpyCH4III	ACNGT	2 cut(s)	705, 842
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	8 cut(s)	19, 37, 328, 356, 442, 470, 792, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 789, 853, 961
HpyF3I	CTNAG	4 cut(s)	53, 633, 911, 995
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	6 cut(s)	63, 422, 536, 554, 698, 801
HspAI	GCGC	1 cut(s)	589
KflI	GGGWCCC	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	3 cut(s)	5, 64, 649
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	857
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	338, 452, 682
MalI	GATC	3 cut(s)	7, 66, 651
MboI	GATC	3 cut(s)	5, 64, 649
MboII	GAAGA	7 cut(s)	151, 216, 304, 613, 676, 679, 688
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	6 cut(s)	297, 334, 448, 637, 925, 1035
MmeI	TCCRAC	2 cut(s)	235, 926
MseI	TTAA	7 cut(s)	570, 743, 849, 903, 923, 1034, 1046
MspI	CCGG	4 cut(s)	94, 215, 313, 761
MspR9I	CCNGG	4 cut(s)	314, 384, 498, 877
Mva1269I	GAATGC	1 cut(s)	974
MvaI	CCWGG	3 cut(s)	384, 498, 877
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	4 cut(s)	83, 789, 853, 961
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	5, 64, 649
NlaIII	CATG	6 cut(s)	63, 422, 536, 554, 698, 801
NlaIV	GGNNCC	4 cut(s)	122, 264, 265, 899
NspI	RCATGY	2 cut(s)	422, 698
NspV	TTCGAA	1 cut(s)	131
PciI	ACATGT	1 cut(s)	694
PctI	GAATGC	1 cut(s)	974
PfeI	GAWTC	1 cut(s)	866
PflMI	CCANNNNNTGG	1 cut(s)	945
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	85, 99
PpuMI	RGGWCCY	1 cut(s)	263
PscI	ACATGT	1 cut(s)	694
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	3 cut(s)	382, 496, 875
PspGI	CCWGG	3 cut(s)	382, 496, 875
PspN4I	GGNNCC	4 cut(s)	122, 264, 265, 899
PspPI	GGNCC	3 cut(s)	121, 263, 274
PspPPI	RGGWCCY	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	3 cut(s)	226, 391, 505
RsaNI	GTAC	3 cut(s)	225, 390, 504
SaqAI	TTAA	7 cut(s)	570, 743, 849, 903, 923, 1034, 1046
SatI	GCNGC	2 cut(s)	84, 98
Sau3AI	GATC	3 cut(s)	5, 64, 649
Sau96I	GGNCC	3 cut(s)	121, 263, 274
ScrFI	CCNGG	4 cut(s)	314, 384, 498, 877
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	2 cut(s)	121, 263
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	6 cut(s)	297, 334, 448, 637, 925, 1035
SsiI	CCGC	7 cut(s)	81, 84, 97, 281, 566, 591, 936
SspMI	CTAG	1 cut(s)	857
StyD4I	CCNGG	4 cut(s)	312, 382, 496, 875
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	705, 842
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	4 cut(s)	8, 131, 153, 1021
TasI	AATT	6 cut(s)	297, 334, 448, 637, 925, 1035
TatI	WGTACW	2 cut(s)	389, 503
TauI	GCSGC	2 cut(s)	86, 100
TfiI	GAWTC	1 cut(s)	866
Tru1I	TTAA	7 cut(s)	570, 743, 849, 903, 923, 1034, 1046
Tru9I	TTAA	7 cut(s)	570, 743, 849, 903, 923, 1034, 1046
TspDTI	ATGAA	7 cut(s)	305, 347, 461, 627, 786, 858, 967
Van91I	CCANNNNNTGG	1 cut(s)	945
VpaK11BI	GGWCC	2 cut(s)	121, 263
XagI	CCTNNNNNAGG	1 cut(s)	431
XapI	RAATTY	1 cut(s)	925
XceI	RCATGY	2 cut(s)	422, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	762
XspI	CTAG	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.