Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029518.1

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 718

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029518.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 376 bp

gacaccaggactgcggaatctcattttacctggggagttgaagaactatatatttggcaagttggcgcctaactggaagaatttgagaaaagtacgcatatacatttctgcttataattttgttgctctccaagctaattgcaaatttatatgtgagctcaatttgtatggacgcatggacgagaatttagcatccatgctcgctaaattttttccagatctcaagtctctagagattagtgggtgtacaatgtcgaaccgtgccctgagaatcatatcggatggtcacaagaatcttgagctacttgatacacaacagcacttctaccattttgctgaggctcacgtcgaatcaagttcgaaaccagagatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

14.22

Weight (kDa)

8.81

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	1 cut(s)	14
AcsI	RAATTY	4 cut(s)	80, 144, 185, 207
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	94, 248
AgsI	TTSAA	1 cut(s)	41
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	5, 29
AluBI	AGCT	3 cut(s)	135, 158, 302
AluI	AGCT	3 cut(s)	135, 158, 302
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	232
ApoI	RAATTY	4 cut(s)	80, 144, 185, 207
AspLEI	GCGC	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	276
BciT130I	CCWGG	2 cut(s)	7, 31
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	7, 31
BmgBI	CACGTC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	7, 31
BmsI	GCATC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	337
Bpu14I	TTCGAA	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	207, 318
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	7, 31
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	192, 287
BseMII	CTCAG	2 cut(s)	258, 328
BseNI	ACTGG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	160, 266
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	2 cut(s)	259, 329
BspLI	GGNNCC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	7, 31
Bst4CI	ACNGT	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	66
BstAUI	TGTACA	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	267, 337
BstF5I	GGATG	2 cut(s)	192, 287
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	2 cut(s)	7, 31
BstSCI	CCNGG	2 cut(s)	5, 29
BstSLI	GKGCMC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	192, 287
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	68
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	93, 247
CviAII	CATG	2 cut(s)	176, 197
CviJI	RGCY	4 cut(s)	135, 158, 302, 342
CviKI_1	RGCY	4 cut(s)	135, 158, 302, 342
CviQI	GTAC	2 cut(s)	93, 247
DdeI	CTNAG	2 cut(s)	267, 337
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	5, 29
EcoT38I	GRGCYC	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaeI	CATG	2 cut(s)	179, 200
FatI	CATG	2 cut(s)	175, 196
FokI	GGATG	2 cut(s)	179, 294
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	69
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	179, 200
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	17, 271, 293, 351
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	3 cut(s)	216, 231, 297
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	2 cut(s)	267, 337
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	179, 200
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	6 cut(s)	16, 19, 43, 59, 229, 279
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	2 cut(s)	53, 89
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	160, 266
MluCI	AATT	7 cut(s)	80, 116, 137, 144, 161, 185, 207
Mly113I	GGCGCC	1 cut(s)	66
MnlI	CCTC	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	7, 31
MvaI	CCWGG	2 cut(s)	7, 31
MwoI	GCNNNNNNNGC	1 cut(s)	132
NarI	GGCGCC	1 cut(s)	66
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	179, 200
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	17, 271, 293, 351
PluTI	GGCGCC	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	5, 29
PspGI	CCWGG	2 cut(s)	5, 29
PspN4I	GGNNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	2 cut(s)	94, 248
RsaNI	GTAC	2 cut(s)	93, 247
SacI	GAGCTC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	7, 31
SduI	GDGCHC	2 cut(s)	160, 266
SetI	ASST	5 cut(s)	32, 137, 160, 304, 349
SfaNI	GCATC	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	360
SmlI	CTYRAG	2 cut(s)	222, 297
SmoI	CTYRAG	2 cut(s)	222, 297
Sse9I	AATT	7 cut(s)	80, 116, 137, 144, 161, 185, 207
SsiI	CCGC	1 cut(s)	14
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	5, 29
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	3 cut(s)	255, 349, 360
TasI	AATT	7 cut(s)	80, 116, 137, 144, 161, 185, 207
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	4 cut(s)	17, 271, 293, 351
TseFI	GTSAC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	285
XapI	RAATTY	4 cut(s)	80, 144, 185, 207
XbaI	TCTAGA	1 cut(s)	230
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.