Rh5BG030900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004529
Physical Location & Seq
Reverse (-)
2189531 .. 2189958
428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG030900.1

Sequence Viewer

Length: 207 bp
ATGGCCCGAGCCAAGGCAGTGAAGAAAATTGTGGCTTATGGTCGGGAAAAGGGTTTGCATAAAAACAAGTCTATTATATATACTGATGATAAACTAGAGGCCCTTTTTCCTGGCAGGAAATCTATTCATATATTTCGAATTGATAACCTGTTGGCCAAGAACAGTCATATACAGCCGCTTAAAGTTTATATGAGAATAAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.84

Weight (kDa)

10.34

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 1 - 53 1.1e-09 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 13
AjnI CCWGG 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 3 cut(s) 3, 99, 153
AspS9I GGNCC 2 cut(s) 4, 100
AsuII TTCGAA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 6
BalI TGGCCA 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 111
BfaI CTAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 2 cut(s) 4, 100
BmrFI CCNGG 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 13
BshFI GGCC 3 cut(s) 5, 101, 155
BsiHKCI CYCGRG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 13
BsnI GGCC 3 cut(s) 5, 101, 155
BsoBI CYCGRG 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 136
BspACI CCGC 1 cut(s) 176
BspANI GGCC 3 cut(s) 5, 101, 155
BspT104I TTCGAA 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 136
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BsuRI GGCC 3 cut(s) 5, 101, 155
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 4, 100
CviJI RGCY 6 cut(s) 5, 11, 35, 101, 155, 175
CviKI_1 RGCY 6 cut(s) 5, 11, 35, 101, 155, 175
EaeI YGGCCR 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 3 cut(s) 5, 101, 155
Hpy188III TCNNGA 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 58
LpnPI CCDG 4 cut(s) 96, 100, 123, 161
MaeI CTAG 1 cut(s) 95
MboII GAAGA 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 2 cut(s) 27, 138
MluNI TGGCCA 1 cut(s) 155
MnlI CCTC 1 cut(s) 91
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NspV TTCGAA 1 cut(s) 136
PkrI GCNGC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 2 cut(s) 4, 100
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 176
Sau96I GGNCC 2 cut(s) 4, 100
ScrFI CCNGG 1 cut(s) 111
SetI ASST 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 136
Sse9I AATT 2 cut(s) 27, 138
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 136
TasI AATT 2 cut(s) 27, 138
TauI GCSGC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 24
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.