F-box LRR-repeat protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g02400 |
| rosa_chinensis | RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631 |
| rosa_laevigata | RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159 |
| rosa_multiflora | Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00072310 Rroxscaffold_1G00072360 |
| rosa_rugosa | Rorug04G0405000 Rorug04G0405100 Rorug04G0405200 |
| rosa_samantha | Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600 |
| rosa_wichuraiana | Rw2G047160 Rw5G002980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 25 |
| AccB1I | GGYRCC | 2 cut(s) | 25, 259 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 903 |
| AccBSI | CCGCTC | 1 cut(s) | 329 |
| AccII | CGCG | 3 cut(s) | 111, 325, 1326 |
| AclWI | GGATC | 5 cut(s) | 87, 306, 319, 398, 971 |
| AcoI | YGGCCR | 1 cut(s) | 771 |
| AcsI | RAATTY | 4 cut(s) | 437, 883, 935, 1057 |
| AcuI | CTGAAG | 1 cut(s) | 275 |
| AfaI | GTAC | 6 cut(s) | 16, 27, 229, 1002, 1071, 1225 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 367, 480, 903 |
| AgsI | TTSAA | 2 cut(s) | 7, 703 |
| AjnI | CCWGG | 2 cut(s) | 45, 833 |
| AleI | CACNNNNGTG | 1 cut(s) | 1048 |
| AluBI | AGCT | 9 cut(s) | 289, 298, 706, 805, 1112, 1135, 1181, 1279, 1390 |
| AluI | AGCT | 9 cut(s) | 289, 298, 706, 805, 1112, 1135, 1181, 1279, 1390 |
| Alw21I | GWGCWC | 1 cut(s) | 159 |
| Alw26I | GTCTC | 4 cut(s) | 80, 285, 1209, 1370 |
| AlwI | GGATC | 5 cut(s) | 87, 306, 319, 398, 971 |
| Ama87I | CYCGRG | 1 cut(s) | 923 |
| AoxI | GGCC | 1 cut(s) | 771 |
| ApoI | RAATTY | 4 cut(s) | 437, 883, 935, 1057 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1187, 1219 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 129, 1301 |
| Asp718I | GGTACC | 1 cut(s) | 25 |
| AspA2I | CCTAGG | 1 cut(s) | 1243 |
| AsuC2I | CCSGG | 1 cut(s) | 362 |
| AsuHPI | GGTGA | 5 cut(s) | 535, 593, 607, 623, 934 |
| AsuNHI | GCTAGC | 2 cut(s) | 55, 1177 |
| AvaI | CYCGRG | 1 cut(s) | 923 |
| AvrII | CCTAGG | 1 cut(s) | 1243 |
| AxyI | CCTNAGG | 1 cut(s) | 869 |
| BamHI | GGATCC | 1 cut(s) | 311 |
| BanI | GGYRCC | 2 cut(s) | 25, 259 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1289, 1321 |
| BbsI | GAAGAC | 1 cut(s) | 935 |
| Bbv12I | GWGCWC | 1 cut(s) | 159 |
| BccI | CCATC | 7 cut(s) | 173, 191, 509, 905, 1143, 1147, 1253 |
| BceAI | ACGGC | 1 cut(s) | 735 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1067, 1101 |
| BciT130I | CCWGG | 2 cut(s) | 47, 835 |
| BclI | TGATCA | 1 cut(s) | 583 |
| BcnI | CCSGG | 1 cut(s) | 362 |
| BcoDI | GTCTC | 4 cut(s) | 80, 285, 1209, 1370 |
| BfaI | CTAG | 8 cut(s) | 56, 413, 458, 641, 1178, 1208, 1244, 1280 |
| BglII | AGATCT | 1 cut(s) | 563 |
| BisI | GCNGC | 2 cut(s) | 351, 815 |
| BlnI | CCTAGG | 1 cut(s) | 1243 |
| BlsI | GCNGC | 2 cut(s) | 352, 816 |
| Bme1390I | CCNGG | 3 cut(s) | 47, 362, 835 |
| BmeT110I | CYCGRG | 1 cut(s) | 923 |
| BmiI | GGNNCC | 4 cut(s) | 27, 261, 313, 818 |
| BmrFI | CCNGG | 3 cut(s) | 47, 362, 835 |
| BmsI | GCATC | 3 cut(s) | 124, 406, 1178 |
| BmtI | GCTAGC | 2 cut(s) | 59, 1181 |
| BpiI | GAAGAC | 1 cut(s) | 935 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 843, 875 |
| BpmI | CTGGAG | 3 cut(s) | 104, 140, 1412 |
| Bpu10I | CCTNAGC | 1 cut(s) | 68 |
| BpuEI | CTTGAG | 3 cut(s) | 1052, 1184, 1259 |
| BpuMI | CCSGG | 1 cut(s) | 362 |
| Bsa29I | ATCGAT | 2 cut(s) | 180, 1077 |
| BsaAI | YACGTR | 1 cut(s) | 14 |
| BsaBI | GATNNNNATC | 1 cut(s) | 828 |
| BsaI | GGTCTC | 1 cut(s) | 80 |
| BsaJI | CCNNGG | 4 cut(s) | 662, 833, 902, 1243 |
| BsaWI | WCCGGW | 1 cut(s) | 979 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1379, 1409 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 367, 480, 903 |
| Bse21I | CCTNAGG | 1 cut(s) | 869 |
| Bse8I | GATNNNNATC | 1 cut(s) | 828 |
| BseBI | CCWGG | 2 cut(s) | 47, 835 |
| BseCI | ATCGAT | 2 cut(s) | 180, 1077 |
| BseDI | CCNNGG | 4 cut(s) | 662, 833, 902, 1243 |
| BseGI | GGATG | 7 cut(s) | 165, 214, 897, 1154, 1158, 1169, 1264 |
| BseJI | GATNNNNATC | 1 cut(s) | 828 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 367, 480, 903 |
| BseMII | CTCAG | 2 cut(s) | 558, 883 |
| BseRI | GAGGAG | 1 cut(s) | 321 |
| BseYI | CCCAGC | 2 cut(s) | 474, 1412 |
| Bsh1236I | CGCG | 3 cut(s) | 111, 325, 1326 |
| Bsh1285I | CGRYCG | 1 cut(s) | 662 |
| BshFI | GGCC | 1 cut(s) | 773 |
| BshNI | GGYRCC | 2 cut(s) | 25, 259 |
| BshVI | ATCGAT | 2 cut(s) | 180, 1077 |
| BsiEI | CGRYCG | 1 cut(s) | 662 |
| BsiHKAI | GWGCWC | 1 cut(s) | 159 |
| BsiHKCI | CYCGRG | 1 cut(s) | 923 |
| BsiSI | CCGG | 4 cut(s) | 99, 263, 361, 980 |
| BslFI | GGGAC | 1 cut(s) | 457 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 367, 480, 903 |
| BsmAI | GTCTC | 4 cut(s) | 80, 285, 1209, 1370 |
| BsmFI | GGGAC | 1 cut(s) | 457 |
| BsnI | GGCC | 1 cut(s) | 773 |
| Bso31I | GGTCTC | 1 cut(s) | 80 |
| BsoBI | CYCGRG | 1 cut(s) | 923 |
| Bsp1286I | GDGCHC | 1 cut(s) | 159 |
| Bsp1407I | TGTACA | 1 cut(s) | 1223 |
| Bsp143I | GATC | 8 cut(s) | 79, 139, 311, 390, 563, 583, 808, 963 |
| BspANI | GGCC | 1 cut(s) | 773 |
| BspCNI | CTCAG | 2 cut(s) | 559, 882 |
| BspDI | ATCGAT | 2 cut(s) | 180, 1077 |
| BspFNI | CGCG | 3 cut(s) | 111, 325, 1326 |
| BspLI | GGNNCC | 4 cut(s) | 27, 261, 313, 818 |
| BspOI | GCTAGC | 2 cut(s) | 59, 1181 |
| BspPI | GGATC | 5 cut(s) | 87, 306, 319, 398, 971 |
| BspT107I | GGYRCC | 2 cut(s) | 25, 259 |
| BspTNI | GGTCTC | 1 cut(s) | 80 |
| BsrBI | CCGCTC | 1 cut(s) | 329 |
| BsrGI | TGTACA | 1 cut(s) | 1223 |
| BssECI | CCNNGG | 4 cut(s) | 662, 833, 902, 1243 |
| BssMI | GATC | 8 cut(s) | 79, 139, 311, 390, 563, 583, 808, 963 |
| BssT1I | CCWWGG | 2 cut(s) | 902, 1243 |
| Bst2UI | CCWGG | 2 cut(s) | 47, 835 |
| Bst4CI | ACNGT | 3 cut(s) | 161, 663, 1370 |
| Bst6I | CTCTTC | 3 cut(s) | 97, 530, 599 |
| BstAUI | TGTACA | 1 cut(s) | 1223 |
| BstBAI | YACGTR | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 4 cut(s) | 57, 113, 327, 1179 |
| BstDEI | CTNAG | 5 cut(s) | 68, 497, 567, 869, 1136 |
| BstDSI | CCRYGG | 1 cut(s) | 662 |
| BstF5I | GGATG | 7 cut(s) | 165, 214, 897, 1154, 1158, 1169, 1264 |
| BstFNI | CGCG | 3 cut(s) | 111, 325, 1326 |
| BstKTI | GATC | 8 cut(s) | 82, 142, 314, 393, 566, 586, 811, 966 |
| BstMAI | GTCTC | 4 cut(s) | 80, 285, 1209, 1370 |
| BstMBI | GATC | 8 cut(s) | 79, 139, 311, 390, 563, 583, 808, 963 |
| BstMCI | CGRYCG | 1 cut(s) | 662 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 295, 811 |
| BstNI | CCWGG | 2 cut(s) | 47, 835 |
| BstSCI | CCNGG | 3 cut(s) | 45, 360, 833 |
| BstSNI | TACGTA | 1 cut(s) | 14 |
| BstUI | CGCG | 3 cut(s) | 111, 325, 1326 |
| BstV2I | GAAGAC | 1 cut(s) | 935 |
| BstX2I | RGATCY | 3 cut(s) | 79, 311, 563 |
| BstYI | RGATCY | 3 cut(s) | 79, 311, 563 |
| Bsu15I | ATCGAT | 2 cut(s) | 180, 1077 |
| Bsu36I | CCTNAGG | 1 cut(s) | 869 |
| BsuRI | GGCC | 1 cut(s) | 773 |
| BsuTUI | ATCGAT | 2 cut(s) | 180, 1077 |
| BtgI | CCRYGG | 1 cut(s) | 662 |
| BtsCI | GGATG | 7 cut(s) | 165, 214, 897, 1154, 1158, 1169, 1264 |
| BtsI | GCAGTG | 2 cut(s) | 50, 774 |
| BtsIMutI | CAGTG | 3 cut(s) | 50, 774, 1432 |
| Cac8I | GCNNGC | 4 cut(s) | 57, 113, 327, 1179 |
| ClaI | ATCGAT | 2 cut(s) | 180, 1077 |
| CseI | GACGC | 1 cut(s) | 331 |
| Csp6I | GTAC | 6 cut(s) | 15, 26, 228, 1001, 1070, 1224 |
| CviAII | CATG | 3 cut(s) | 756, 1174, 1313 |
| CviQI | GTAC | 6 cut(s) | 15, 26, 228, 1001, 1070, 1224 |
| DdeI | CTNAG | 5 cut(s) | 68, 497, 567, 869, 1136 |
| DpnI | GATC | 8 cut(s) | 81, 141, 313, 392, 565, 585, 810, 965 |
| DpnII | GATC | 8 cut(s) | 79, 139, 311, 390, 563, 583, 808, 963 |
| EaeI | YGGCCR | 1 cut(s) | 771 |
| Eam1104I | CTCTTC | 3 cut(s) | 97, 530, 599 |
| EarI | CTCTTC | 3 cut(s) | 97, 530, 599 |
| Eco105I | TACGTA | 1 cut(s) | 14 |
| Eco130I | CCWWGG | 2 cut(s) | 902, 1243 |
| Eco31I | GGTCTC | 1 cut(s) | 80 |
| Eco32I | GATATC | 2 cut(s) | 64, 184 |
| Eco57I | CTGAAG | 1 cut(s) | 275 |
| Eco81I | CCTNAGG | 1 cut(s) | 869 |
| Eco88I | CYCGRG | 1 cut(s) | 923 |
| EcoRI | GAATTC | 1 cut(s) | 935 |
| EcoRII | CCWGG | 2 cut(s) | 45, 833 |
| EcoRV | GATATC | 2 cut(s) | 64, 184 |
| EcoT14I | CCWWGG | 2 cut(s) | 902, 1243 |
| ErhI | CCWWGG | 2 cut(s) | 902, 1243 |
| FaeI | CATG | 3 cut(s) | 759, 1177, 1316 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1286, 1318 |
| FaqI | GGGAC | 1 cut(s) | 457 |
| FatI | CATG | 3 cut(s) | 755, 1173, 1312 |
| FauI | CCCGC | 3 cut(s) | 104, 512, 901 |
| FauNDI | CATATG | 1 cut(s) | 486 |
| FbaI | TGATCA | 1 cut(s) | 583 |
| Fnu4HI | GCNGC | 2 cut(s) | 351, 815 |
| FokI | GGATG | 7 cut(s) | 152, 221, 884, 1156, 1161, 1165, 1271 |
| Fsp4HI | GCNGC | 2 cut(s) | 351, 815 |
| FspBI | CTAG | 8 cut(s) | 56, 413, 458, 641, 1178, 1208, 1244, 1280 |
| GluI | GCNGC | 2 cut(s) | 351, 815 |
| GsaI | CCCAGC | 2 cut(s) | 478, 1416 |
| GsuI | CTGGAG | 3 cut(s) | 104, 140, 1412 |
| HaeIII | GGCC | 1 cut(s) | 773 |
| HapII | CCGG | 4 cut(s) | 99, 263, 361, 980 |
| HgaI | GACGC | 1 cut(s) | 331 |
| Hin1II | CATG | 3 cut(s) | 759, 1177, 1316 |
| HincII | GTYRAC | 1 cut(s) | 1318 |
| HindII | GTYRAC | 1 cut(s) | 1318 |
| HinfI | GANTC | 6 cut(s) | 31, 824, 1034, 1163, 1248, 1270 |
| HpaII | CCGG | 4 cut(s) | 99, 263, 361, 980 |
| HphI | GGTGA | 5 cut(s) | 535, 593, 607, 623, 934 |
| Hpy166II | GTNNAC | 3 cut(s) | 1072, 1224, 1318 |
| Hpy188I | TCNGA | 2 cut(s) | 316, 568 |
| Hpy188III | TCNNGA | 7 cut(s) | 83, 119, 293, 871, 888, 1031, 1208 |
| Hpy8I | GTNNAC | 3 cut(s) | 1072, 1224, 1318 |
| HpyAV | CCTTC | 3 cut(s) | 431, 523, 572 |
| HpyCH4III | ACNGT | 3 cut(s) | 161, 663, 1370 |
| HpyCH4IV | ACGT | 1 cut(s) | 13 |
| HpyCH4V | TGCA | 4 cut(s) | 383, 490, 1088, 1119 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 295, 811 |
| HpyF3I | CTNAG | 5 cut(s) | 68, 497, 567, 869, 1136 |
| HpySE526I | ACGT | 1 cut(s) | 13 |
| Hsp92II | CATG | 3 cut(s) | 759, 1177, 1316 |
| KpnI | GGTACC | 1 cut(s) | 29 |
| Ksp22I | TGATCA | 1 cut(s) | 583 |
| Kzo9I | GATC | 8 cut(s) | 79, 139, 311, 390, 563, 583, 808, 963 |
| LmnI | GCTCC | 3 cut(s) | 295, 822, 1387 |
| LweI | GCATC | 3 cut(s) | 124, 406, 1178 |
| MaeI | CTAG | 8 cut(s) | 56, 413, 458, 641, 1178, 1208, 1244, 1280 |
| MaeII | ACGT | 1 cut(s) | 13 |
| MaeIII | GTNAC | 5 cut(s) | 9, 397, 1039, 1262, 1328 |
| MalI | GATC | 8 cut(s) | 81, 141, 313, 392, 565, 585, 810, 965 |
| MbiI | CCGCTC | 1 cut(s) | 329 |
| MboI | GATC | 8 cut(s) | 79, 139, 311, 390, 563, 583, 808, 963 |
| MfeI | CAATTG | 1 cut(s) | 761 |
| MflI | RGATCY | 3 cut(s) | 79, 311, 563 |
| MhlI | GDGCHC | 1 cut(s) | 159 |
| MluCI | AATT | 9 cut(s) | 345, 437, 571, 761, 883, 935, 1057, 1093, 1114 |
| MlyI | GAGTC | 1 cut(s) | 1043 |
| MmeI | TCCRAC | 1 cut(s) | 1377 |
| MroXI | GAANNNNTTC | 2 cut(s) | 129, 1301 |
| MseI | TTAA | 5 cut(s) | 618, 881, 990, 1127, 1419 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1048 |
| MspI | CCGG | 4 cut(s) | 99, 263, 361, 980 |
| MspR9I | CCNGG | 3 cut(s) | 47, 362, 835 |
| MunI | CAATTG | 1 cut(s) | 761 |
| MvaI | CCWGG | 2 cut(s) | 47, 835 |
| MvnI | CGCG | 3 cut(s) | 111, 325, 1326 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 295, 811 |
| NciI | CCSGG | 1 cut(s) | 362 |
| NdeI | CATATG | 1 cut(s) | 486 |
| NdeII | GATC | 8 cut(s) | 79, 139, 311, 390, 563, 583, 808, 963 |
| NheI | GCTAGC | 2 cut(s) | 55, 1177 |
| NlaIII | CATG | 3 cut(s) | 759, 1177, 1316 |
| NlaIV | GGNNCC | 4 cut(s) | 27, 261, 313, 818 |
| NmuCI | GTSAC | 2 cut(s) | 1262, 1328 |
| OliI | CACNNNNGTG | 1 cut(s) | 1048 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1043 |
| PdmI | GAANNNNTTC | 2 cut(s) | 129, 1301 |
| PfeI | GAWTC | 5 cut(s) | 31, 824, 1163, 1248, 1270 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 903 |
| PkrI | GCNGC | 2 cut(s) | 352, 816 |
| PleI | GAGTC | 1 cut(s) | 1042 |
| PpsI | GAGTC | 1 cut(s) | 1042 |
| Ppu21I | YACGTR | 1 cut(s) | 14 |
| Psp6I | CCWGG | 2 cut(s) | 45, 833 |
| PspFI | CCCAGC | 2 cut(s) | 474, 1412 |
| PspGI | CCWGG | 2 cut(s) | 45, 833 |
| PspN4I | GGNNCC | 4 cut(s) | 27, 261, 313, 818 |
| PsuI | RGATCY | 3 cut(s) | 79, 311, 563 |
| RsaI | GTAC | 6 cut(s) | 16, 27, 229, 1002, 1071, 1225 |
| RsaNI | GTAC | 6 cut(s) | 15, 26, 228, 1001, 1070, 1224 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1048 |
| SaqAI | TTAA | 5 cut(s) | 618, 881, 990, 1127, 1419 |
| SatI | GCNGC | 2 cut(s) | 351, 815 |
| Sau3AI | GATC | 8 cut(s) | 79, 139, 311, 390, 563, 583, 808, 963 |
| SchI | GAGTC | 1 cut(s) | 1043 |
| ScrFI | CCNGG | 3 cut(s) | 47, 362, 835 |
| SduI | GDGCHC | 1 cut(s) | 159 |
| SfaNI | GCATC | 3 cut(s) | 124, 406, 1178 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1048 |
| SmlI | CTYRAG | 3 cut(s) | 1031, 1199, 1274 |
| SmoI | CTYRAG | 3 cut(s) | 1031, 1199, 1274 |
| SnaBI | TACGTA | 1 cut(s) | 14 |
| Sse9I | AATT | 9 cut(s) | 345, 437, 571, 761, 883, 935, 1057, 1093, 1114 |
| SspI | AATATT | 1 cut(s) | 616 |
| SspMI | CTAG | 8 cut(s) | 56, 413, 458, 641, 1178, 1208, 1244, 1280 |
| StyD4I | CCNGG | 3 cut(s) | 45, 360, 833 |
| StyI | CCWWGG | 2 cut(s) | 902, 1243 |
| TaaI | ACNGT | 3 cut(s) | 161, 663, 1370 |
| TaiI | ACGT | 1 cut(s) | 16 |
| TaqI | TCGA | 4 cut(s) | 146, 180, 1077, 1232 |
| TasI | AATT | 9 cut(s) | 345, 437, 571, 761, 883, 935, 1057, 1093, 1114 |
| TatI | WGTACW | 1 cut(s) | 1223 |
| TauI | GCSGC | 2 cut(s) | 353, 817 |
| TfiI | GAWTC | 5 cut(s) | 31, 824, 1163, 1248, 1270 |
| Tru1I | TTAA | 5 cut(s) | 618, 881, 990, 1127, 1419 |
| Tru9I | TTAA | 5 cut(s) | 618, 881, 990, 1127, 1419 |
| TscAI | CASTG | 2 cut(s) | 57, 774 |
| TseFI | GTSAC | 2 cut(s) | 1262, 1328 |
| Tsp45I | GTSAC | 2 cut(s) | 1262, 1328 |
| TspDTI | ATGAA | 6 cut(s) | 231, 561, 744, 816, 928, 963 |
| TspRI | CASTG | 2 cut(s) | 57, 774 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 903 |
| XapI | RAATTY | 4 cut(s) | 437, 883, 935, 1057 |
| XbaI | TCTAGA | 1 cut(s) | 1207 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 720 |
| XmaJI | CCTAGG | 1 cut(s) | 1243 |
| XmnI | GAANNNNTTC | 2 cut(s) | 129, 1301 |
| XspI | CTAG | 8 cut(s) | 56, 413, 458, 641, 1178, 1208, 1244, 1280 |