RLG00000021398

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
74853448 .. 74855391
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021398

Sequence Viewer

Length: 1437 bp
ATGTTGAAGTTACGTACATCTTCGGTACCGAATCACACGCACCTCCTGGCACTGCTAGCGGATATCCTTAGCACTTGGGATCTGGAGACCGCCACCGCCGGAAGAGTTCGCGGGCATCTGGAGGAAGATTTTCGGGTTGATCTATCGAACCCAGAGCACCGTTCCATCCAAGAATATATCGATATCTTTTTTGATGATGGGAAAGAGGATGTGAATGAAAGCAAGGGTACAAAAAGAAATAGAAAGAGAAAGAGAAAGGTGCCGGAGATATGTAGGGTGTCTCCACAGCTTCAGGAGCTTGTAGGAGGAGGATCCGAAATGACGCGAGCGGAGGCTGTGAAGAAAATTGCGGCTTATAGCCGGGAAAAGGGTTTGCTAACTGCAAAGAGGATCATAGTAACAGATGATAAACTAGATGCCCTTCTTCCCAAATGTAAATTTATTTTTATATTACGACTAGATTACCTCTTGTCCCAGCATAGGCATATGCAATCGCTTAGAGTTGCCAAAGATGATGGCGGGGTGAGGAAGGGGAAGAGGAACAATGAAGCAAATGGTAAAAGATCTGAGAATTGTGAAGGTGATCAAGTTAGGGTGAAAAAGAAGAGGAACAATATTAAACGAAACATTCACCTCGCACTAGCAGAGGAAGATGTGCGACCGTGGGATAAAATGCCAGAAGATATTATGGTAAAAATCTTCAAGCTATTACCATTTCCATATTGGTCATTCTATCCCTGTTATGTCTGCCGTTCATGGCAATTGGCAGTGGCCGATGTAATGTTTCCACCTAATAACAATGAGCTTGATCTGCGGCTCCTTGATTCATATCCCTGGAAATCAAGGGAAAGAGTTTTACTCCTATACCTCAGGATTGTCTTAAATTCCCGACCCGCCATCCCTTGGGCAACACTTTACTTGCCCGAGAAGACTGAATTCATCACCAATGAAGTCCTCACTTGGATCGCTCAAAAGACACCGGAACTACTTAATCTTTCTGTACCTAAAAAGTTGAGGGGAGATGTTTTTCTTGAGTCGGTTACACCGAAGTGGAAGAATTTGAGAATGGTACACATCGATATTTCTGCAAATAATTTTTCTCATCTCCAAGCTAATTGCACATTTTTAAGTGAGCTTAGTTTATATGGATGGATGGACGATGATTCAGCATCCATGCTAGCTAAATCTTTTCCAAATCTCAAGTCTCTAGAGATTTATGGGTGTACAATGTCGAACCATACCCTAGGAATCATAATGGATGGTCACAAGAATCTCAAGCTAGTTGCTACACGAAAGAAGAACTTCTACCACCATGTTGACCTACGCGGTCACAAGTTGGTTGAGGCATTTACACGGGGAAACTACTACCGTTTTGAGACTTGTGTGGAGCTGGAGTTGGAGAGAACATTTGCTGGGTTTAACCCTATATATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

479

Amino Acids

55.49

Weight (kDa)

9.28

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 15 - 61 9.8e-06 DEK C terminal domain
SWIB PF02201 90 - 160 2.5e-11 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 25
AccB1I GGYRCC 2 cut(s) 25, 259
AccB7I CCANNNNNTGG 1 cut(s) 903
AccBSI CCGCTC 1 cut(s) 329
AccII CGCG 3 cut(s) 111, 325, 1326
AclWI GGATC 5 cut(s) 87, 306, 319, 398, 971
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 4 cut(s) 437, 883, 935, 1057
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 6 cut(s) 16, 27, 229, 1002, 1071, 1225
AfiI CCNNNNNNNGG 3 cut(s) 367, 480, 903
AgsI TTSAA 2 cut(s) 7, 703
AjnI CCWGG 2 cut(s) 45, 833
AleI CACNNNNGTG 1 cut(s) 1048
AluBI AGCT 9 cut(s) 289, 298, 706, 805, 1112, 1135, 1181, 1279, 1390
AluI AGCT 9 cut(s) 289, 298, 706, 805, 1112, 1135, 1181, 1279, 1390
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 4 cut(s) 80, 285, 1209, 1370
AlwI GGATC 5 cut(s) 87, 306, 319, 398, 971
Ama87I CYCGRG 1 cut(s) 923
AoxI GGCC 1 cut(s) 771
ApoI RAATTY 4 cut(s) 437, 883, 935, 1057
ArsI GACNNNNNNTTYG 2 cut(s) 1187, 1219
Asp700I GAANNNNTTC 2 cut(s) 129, 1301
Asp718I GGTACC 1 cut(s) 25
AspA2I CCTAGG 1 cut(s) 1243
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 5 cut(s) 535, 593, 607, 623, 934
AsuNHI GCTAGC 2 cut(s) 55, 1177
AvaI CYCGRG 1 cut(s) 923
AvrII CCTAGG 1 cut(s) 1243
AxyI CCTNAGG 1 cut(s) 869
BamHI GGATCC 1 cut(s) 311
BanI GGYRCC 2 cut(s) 25, 259
BarI GAAGNNNNNNTAC 2 cut(s) 1289, 1321
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 1 cut(s) 159
BccI CCATC 7 cut(s) 173, 191, 509, 905, 1143, 1147, 1253
BceAI ACGGC 1 cut(s) 735
BcgI CGANNNNNNTGC 2 cut(s) 1067, 1101
BciT130I CCWGG 2 cut(s) 47, 835
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 4 cut(s) 80, 285, 1209, 1370
BfaI CTAG 8 cut(s) 56, 413, 458, 641, 1178, 1208, 1244, 1280
BglII AGATCT 1 cut(s) 563
BisI GCNGC 2 cut(s) 351, 815
BlnI CCTAGG 1 cut(s) 1243
BlsI GCNGC 2 cut(s) 352, 816
Bme1390I CCNGG 3 cut(s) 47, 362, 835
BmeT110I CYCGRG 1 cut(s) 923
BmiI GGNNCC 4 cut(s) 27, 261, 313, 818
BmrFI CCNGG 3 cut(s) 47, 362, 835
BmsI GCATC 3 cut(s) 124, 406, 1178
BmtI GCTAGC 2 cut(s) 59, 1181
BpiI GAAGAC 1 cut(s) 935
BplI GAGNNNNNCTC 2 cut(s) 843, 875
BpmI CTGGAG 3 cut(s) 104, 140, 1412
Bpu10I CCTNAGC 1 cut(s) 68
BpuEI CTTGAG 3 cut(s) 1052, 1184, 1259
BpuMI CCSGG 1 cut(s) 362
Bsa29I ATCGAT 2 cut(s) 180, 1077
BsaAI YACGTR 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 662, 833, 902, 1243
BsaWI WCCGGW 1 cut(s) 979
BsaXI ACNNNNNCTCC 2 cut(s) 1379, 1409
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 480, 903
Bse21I CCTNAGG 1 cut(s) 869
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 2 cut(s) 47, 835
BseCI ATCGAT 2 cut(s) 180, 1077
BseDI CCNNGG 4 cut(s) 662, 833, 902, 1243
BseGI GGATG 7 cut(s) 165, 214, 897, 1154, 1158, 1169, 1264
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 3 cut(s) 367, 480, 903
BseMII CTCAG 2 cut(s) 558, 883
BseRI GAGGAG 1 cut(s) 321
BseYI CCCAGC 2 cut(s) 474, 1412
Bsh1236I CGCG 3 cut(s) 111, 325, 1326
Bsh1285I CGRYCG 1 cut(s) 662
BshFI GGCC 1 cut(s) 773
BshNI GGYRCC 2 cut(s) 25, 259
BshVI ATCGAT 2 cut(s) 180, 1077
BsiEI CGRYCG 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 923
BsiSI CCGG 4 cut(s) 99, 263, 361, 980
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 3 cut(s) 367, 480, 903
BsmAI GTCTC 4 cut(s) 80, 285, 1209, 1370
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 1 cut(s) 773
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 923
Bsp1286I GDGCHC 1 cut(s) 159
Bsp1407I TGTACA 1 cut(s) 1223
Bsp143I GATC 8 cut(s) 79, 139, 311, 390, 563, 583, 808, 963
BspANI GGCC 1 cut(s) 773
BspCNI CTCAG 2 cut(s) 559, 882
BspDI ATCGAT 2 cut(s) 180, 1077
BspFNI CGCG 3 cut(s) 111, 325, 1326
BspLI GGNNCC 4 cut(s) 27, 261, 313, 818
BspOI GCTAGC 2 cut(s) 59, 1181
BspPI GGATC 5 cut(s) 87, 306, 319, 398, 971
BspT107I GGYRCC 2 cut(s) 25, 259
BspTNI GGTCTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 1223
BssECI CCNNGG 4 cut(s) 662, 833, 902, 1243
BssMI GATC 8 cut(s) 79, 139, 311, 390, 563, 583, 808, 963
BssT1I CCWWGG 2 cut(s) 902, 1243
Bst2UI CCWGG 2 cut(s) 47, 835
Bst4CI ACNGT 3 cut(s) 161, 663, 1370
Bst6I CTCTTC 3 cut(s) 97, 530, 599
BstAUI TGTACA 1 cut(s) 1223
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 57, 113, 327, 1179
BstDEI CTNAG 5 cut(s) 68, 497, 567, 869, 1136
BstDSI CCRYGG 1 cut(s) 662
BstF5I GGATG 7 cut(s) 165, 214, 897, 1154, 1158, 1169, 1264
BstFNI CGCG 3 cut(s) 111, 325, 1326
BstKTI GATC 8 cut(s) 82, 142, 314, 393, 566, 586, 811, 966
BstMAI GTCTC 4 cut(s) 80, 285, 1209, 1370
BstMBI GATC 8 cut(s) 79, 139, 311, 390, 563, 583, 808, 963
BstMCI CGRYCG 1 cut(s) 662
BstMWI GCNNNNNNNGC 3 cut(s) 56, 295, 811
BstNI CCWGG 2 cut(s) 47, 835
BstSCI CCNGG 3 cut(s) 45, 360, 833
BstSNI TACGTA 1 cut(s) 14
BstUI CGCG 3 cut(s) 111, 325, 1326
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 3 cut(s) 79, 311, 563
BstYI RGATCY 3 cut(s) 79, 311, 563
Bsu15I ATCGAT 2 cut(s) 180, 1077
Bsu36I CCTNAGG 1 cut(s) 869
BsuRI GGCC 1 cut(s) 773
BsuTUI ATCGAT 2 cut(s) 180, 1077
BtgI CCRYGG 1 cut(s) 662
BtsCI GGATG 7 cut(s) 165, 214, 897, 1154, 1158, 1169, 1264
BtsI GCAGTG 2 cut(s) 50, 774
BtsIMutI CAGTG 3 cut(s) 50, 774, 1432
Cac8I GCNNGC 4 cut(s) 57, 113, 327, 1179
ClaI ATCGAT 2 cut(s) 180, 1077
CseI GACGC 1 cut(s) 331
Csp6I GTAC 6 cut(s) 15, 26, 228, 1001, 1070, 1224
CviAII CATG 3 cut(s) 756, 1174, 1313
CviQI GTAC 6 cut(s) 15, 26, 228, 1001, 1070, 1224
DdeI CTNAG 5 cut(s) 68, 497, 567, 869, 1136
DpnI GATC 8 cut(s) 81, 141, 313, 392, 565, 585, 810, 965
DpnII GATC 8 cut(s) 79, 139, 311, 390, 563, 583, 808, 963
EaeI YGGCCR 1 cut(s) 771
Eam1104I CTCTTC 3 cut(s) 97, 530, 599
EarI CTCTTC 3 cut(s) 97, 530, 599
Eco105I TACGTA 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 902, 1243
Eco31I GGTCTC 1 cut(s) 80
Eco32I GATATC 2 cut(s) 64, 184
Eco57I CTGAAG 1 cut(s) 275
Eco81I CCTNAGG 1 cut(s) 869
Eco88I CYCGRG 1 cut(s) 923
EcoRI GAATTC 1 cut(s) 935
EcoRII CCWGG 2 cut(s) 45, 833
EcoRV GATATC 2 cut(s) 64, 184
EcoT14I CCWWGG 2 cut(s) 902, 1243
ErhI CCWWGG 2 cut(s) 902, 1243
FaeI CATG 3 cut(s) 759, 1177, 1316
FalI AAGNNNNNCTT 2 cut(s) 1286, 1318
FaqI GGGAC 1 cut(s) 457
FatI CATG 3 cut(s) 755, 1173, 1312
FauI CCCGC 3 cut(s) 104, 512, 901
FauNDI CATATG 1 cut(s) 486
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 2 cut(s) 351, 815
FokI GGATG 7 cut(s) 152, 221, 884, 1156, 1161, 1165, 1271
Fsp4HI GCNGC 2 cut(s) 351, 815
FspBI CTAG 8 cut(s) 56, 413, 458, 641, 1178, 1208, 1244, 1280
GluI GCNGC 2 cut(s) 351, 815
GsaI CCCAGC 2 cut(s) 478, 1416
GsuI CTGGAG 3 cut(s) 104, 140, 1412
HaeIII GGCC 1 cut(s) 773
HapII CCGG 4 cut(s) 99, 263, 361, 980
HgaI GACGC 1 cut(s) 331
Hin1II CATG 3 cut(s) 759, 1177, 1316
HincII GTYRAC 1 cut(s) 1318
HindII GTYRAC 1 cut(s) 1318
HinfI GANTC 6 cut(s) 31, 824, 1034, 1163, 1248, 1270
HpaII CCGG 4 cut(s) 99, 263, 361, 980
HphI GGTGA 5 cut(s) 535, 593, 607, 623, 934
Hpy166II GTNNAC 3 cut(s) 1072, 1224, 1318
Hpy188I TCNGA 2 cut(s) 316, 568
Hpy188III TCNNGA 7 cut(s) 83, 119, 293, 871, 888, 1031, 1208
Hpy8I GTNNAC 3 cut(s) 1072, 1224, 1318
HpyAV CCTTC 3 cut(s) 431, 523, 572
HpyCH4III ACNGT 3 cut(s) 161, 663, 1370
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 383, 490, 1088, 1119
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 295, 811
HpyF3I CTNAG 5 cut(s) 68, 497, 567, 869, 1136
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 3 cut(s) 759, 1177, 1316
KpnI GGTACC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 8 cut(s) 79, 139, 311, 390, 563, 583, 808, 963
LmnI GCTCC 3 cut(s) 295, 822, 1387
LweI GCATC 3 cut(s) 124, 406, 1178
MaeI CTAG 8 cut(s) 56, 413, 458, 641, 1178, 1208, 1244, 1280
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 5 cut(s) 9, 397, 1039, 1262, 1328
MalI GATC 8 cut(s) 81, 141, 313, 392, 565, 585, 810, 965
MbiI CCGCTC 1 cut(s) 329
MboI GATC 8 cut(s) 79, 139, 311, 390, 563, 583, 808, 963
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 3 cut(s) 79, 311, 563
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 9 cut(s) 345, 437, 571, 761, 883, 935, 1057, 1093, 1114
MlyI GAGTC 1 cut(s) 1043
MmeI TCCRAC 1 cut(s) 1377
MroXI GAANNNNTTC 2 cut(s) 129, 1301
MseI TTAA 5 cut(s) 618, 881, 990, 1127, 1419
MslI CAYNNNNRTG 1 cut(s) 1048
MspI CCGG 4 cut(s) 99, 263, 361, 980
MspR9I CCNGG 3 cut(s) 47, 362, 835
MunI CAATTG 1 cut(s) 761
MvaI CCWGG 2 cut(s) 47, 835
MvnI CGCG 3 cut(s) 111, 325, 1326
MwoI GCNNNNNNNGC 3 cut(s) 56, 295, 811
NciI CCSGG 1 cut(s) 362
NdeI CATATG 1 cut(s) 486
NdeII GATC 8 cut(s) 79, 139, 311, 390, 563, 583, 808, 963
NheI GCTAGC 2 cut(s) 55, 1177
NlaIII CATG 3 cut(s) 759, 1177, 1316
NlaIV GGNNCC 4 cut(s) 27, 261, 313, 818
NmuCI GTSAC 2 cut(s) 1262, 1328
OliI CACNNNNGTG 1 cut(s) 1048
PcsI WCGNNNNNNNCGW 1 cut(s) 1043
PdmI GAANNNNTTC 2 cut(s) 129, 1301
PfeI GAWTC 5 cut(s) 31, 824, 1163, 1248, 1270
PflMI CCANNNNNTGG 1 cut(s) 903
PkrI GCNGC 2 cut(s) 352, 816
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
Ppu21I YACGTR 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 45, 833
PspFI CCCAGC 2 cut(s) 474, 1412
PspGI CCWGG 2 cut(s) 45, 833
PspN4I GGNNCC 4 cut(s) 27, 261, 313, 818
PsuI RGATCY 3 cut(s) 79, 311, 563
RsaI GTAC 6 cut(s) 16, 27, 229, 1002, 1071, 1225
RsaNI GTAC 6 cut(s) 15, 26, 228, 1001, 1070, 1224
RseI CAYNNNNRTG 1 cut(s) 1048
SaqAI TTAA 5 cut(s) 618, 881, 990, 1127, 1419
SatI GCNGC 2 cut(s) 351, 815
Sau3AI GATC 8 cut(s) 79, 139, 311, 390, 563, 583, 808, 963
SchI GAGTC 1 cut(s) 1043
ScrFI CCNGG 3 cut(s) 47, 362, 835
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 3 cut(s) 124, 406, 1178
SmiMI CAYNNNNRTG 1 cut(s) 1048
SmlI CTYRAG 3 cut(s) 1031, 1199, 1274
SmoI CTYRAG 3 cut(s) 1031, 1199, 1274
SnaBI TACGTA 1 cut(s) 14
Sse9I AATT 9 cut(s) 345, 437, 571, 761, 883, 935, 1057, 1093, 1114
SspI AATATT 1 cut(s) 616
SspMI CTAG 8 cut(s) 56, 413, 458, 641, 1178, 1208, 1244, 1280
StyD4I CCNGG 3 cut(s) 45, 360, 833
StyI CCWWGG 2 cut(s) 902, 1243
TaaI ACNGT 3 cut(s) 161, 663, 1370
TaiI ACGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 146, 180, 1077, 1232
TasI AATT 9 cut(s) 345, 437, 571, 761, 883, 935, 1057, 1093, 1114
TatI WGTACW 1 cut(s) 1223
TauI GCSGC 2 cut(s) 353, 817
TfiI GAWTC 5 cut(s) 31, 824, 1163, 1248, 1270
Tru1I TTAA 5 cut(s) 618, 881, 990, 1127, 1419
Tru9I TTAA 5 cut(s) 618, 881, 990, 1127, 1419
TscAI CASTG 2 cut(s) 57, 774
TseFI GTSAC 2 cut(s) 1262, 1328
Tsp45I GTSAC 2 cut(s) 1262, 1328
TspDTI ATGAA 6 cut(s) 231, 561, 744, 816, 928, 963
TspRI CASTG 2 cut(s) 57, 774
Van91I CCANNNNNTGG 1 cut(s) 903
XapI RAATTY 4 cut(s) 437, 883, 935, 1057
XbaI TCTAGA 1 cut(s) 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 720
XmaJI CCTAGG 1 cut(s) 1243
XmnI GAANNNNTTC 2 cut(s) 129, 1301
XspI CTAG 8 cut(s) 56, 413, 458, 641, 1178, 1208, 1244, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.