Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2213709 .. 2220770

Gene Structure 7062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGAATCAATCGGAGATTCGGAGATCGAGGTTCCGAAGGAAAGGCAAAAGTGTTAGACCGAAAGAGAGAATAAGCTTGGTCGACATTCAGATCAGGCTAGGTCTCTCAACTTTGATCATGTCGGTTAGAGGTCAATTACAAAGTACAACAGGTATTCCAAAGGCAGTCAGTAGCATAAGGCTCCTGGACGTGCTACTGGAAATCCTCAGTACTTGGGATTTGGAAACGGCTACCGCCGGAAGCGTCCGCCGGCATCTGGAGAAGGATTTTGGGGCTGATCTATCGGACCCAAAATATCGTATCATCAAAGAAAAAATCGACGTCTTTTTTGAGGAAGGGGAAGAGGATGAGAATGAAGGTAAAGGTAGAAGAAGAAGAAAGAGAAAGAGAAACGAGAAAGAGATATGTATAGTGTCTCCACAGCTTCAAGACATTGTTGGAGAGGGTCCTGAAATGGCCCGAGCCAAGGCAGTGAAGAAAATTGTGGCTTATGGTCGGGAAAAGGGTTTGCATAAAAACAAGTCTATTATATATACTGATGATAAACTAGAGGCCCTTTTTCCTGGCAGGAAATCTGTTCATATATTTCGAATTGATAACCTGTTGGCCAAGAACAGTCATATACAGCCGCTTAAAGTTAAGAAGCTGTGCAAAGAATGCAAGGTGAGGAGGACGAGGACGAGGAGGGAAAATGAGACTTGTGAATGTGATCAAATTGGGGTGAAAAGTCAGAGGAAGGATTCCCAACAGAAACATAACCTAGCAGAGGAAGATATAAGATCGTGGGATACATTGCCACACGATATTCTGGTGAAAATCATTGATTTACTTTGCGGTCCACTCAAGTATTGGACACCCATCTCACCAGCTTTCTCCACGCGTTACGCGTCCGTCAGCCGCTCATGGAAATTGGCAGTCCTTGATCTAGTGTTTCCACCTAGTGATGTGCTTGATCTGCGAGTCCTTGATTCACATCCCTGGAAATCTTGCCATAAGATGTTCTTTCATTACCTCAGGATTGCCTTTAAATGCCGACCCACCAGCGGTTGGACAACACTATACTTTCCCAACGAGACTATATTTGCCGAACGTCCCTTTCTTCAAAATAACACTTTTATGATCAAAAATGATATCCTGACTTTGATCGCTGAGAAGACACCAGGACTGCGGAATCTCATTTTACCTAGGGAGTTGAAGAACTATATATTTGGCAAGTTGGCGCCTAACTGGAAGAATTTGAGAAAAGTACGCATATACATTTCTGCTTATAATTTTGTTGCTCTCCAAGCTAATTGCAAATTTATATGTGAGCTCAATTTGTATGGACGCATGGACGAGAATTTAGCATCCATGCTCGCTAAATTTTTTCCAGATCTCAAGTCTCTAGAGATTAGTGGGTGTACAATGTCGAACCGTGCCCTGAGAATCATATCGGATGGTCACAAGAATCTTGAGCTACTTGATACACAACAGCACTTCTACCATTTTGCTGAGGCTCACGTCGAATCAAGTTCGAAACCAGAGATAACCTCCCGTTCGGAGTGTTCAAGCCAAAACCGGCTTCAACGGCTCGACCGGGCGTGGTCATCGGACGATTATGTGTTGGACTTGTCAGCAATCGCAGCCGCCGGTCCCTTCAACGGTCCGGTCCTCAGAAACTCCGATTGCTTTTATCAGCCTAATTTGAACAAGTTCTTGGCCTTGGGACGACCTGCTTGGAAGGAAGCACGTGCTACACTTCAGAAGCTACTTTCATGTTCGACCCACCAATTGCATATCATGGACGAGCTTCGTCGATTATTATCTCTGGAACTGACATTACTCGACCCAGGTCAATCAGAGATGTATCTCTTGAGACATTTTTACGTCCAAGTTAGGGCTGCTGTAGTTGGTCCTGGAAATGAATTAGGGAATCCGGTGGATGTGAATGAGGCAGCAGATCACATTTTTGGACTTGTCTTGATGAATGGCTGGATTGCAGCTAGCACACCGTACCTTACTATCAATGGTTGCAACTTAAGGCCTGGAGATCTCCTTGGAAATGGGACCATCAGTGGACCTGAGCCAGAATCTTATGGAAACTTGCTAGAGCTGACATGGGATAAGCCGTTGTCATTAAACGACGTTACTCGTAAATTTCTTGAAGATGGAGACGAAGTCATCATTACTGGTTTTAGCAAGGGAAATGGCTACAAAGTCGGGTTCGGGAAATGCTCCGGAAAGATTGTTCCACCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

746

Amino Acids

84.96

Weight (kDa)

9.27

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	64 - 110	5.1e-08	DEK C terminal domain
SWIB	PF02201	135 - 204	1.6e-12	SWIB/MDM2 domain
FAA_hydrolase_N	PF09298	531 - 598	2.3e-13	Fumarylacetoacetase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1269
AatII	GACGTC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	1720
AccB1I	GGYRCC	1 cut(s)	1219
AccB7I	CCANNNNNTGG	1 cut(s)	1047
AccBSI	CCGCTC	1 cut(s)	900
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	2 cut(s)	880, 887
AccIII	TCCGGA	1 cut(s)	2216
AciI	CCGC	8 cut(s)	234, 247, 629, 834, 898, 1044, 1168, 1626
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	5 cut(s)	1234, 1298, 1339, 1361, 2135
AcuI	CTGAAG	1 cut(s)	1724
AcvI	CACGTG	1 cut(s)	1730
AcyI	GRCGYC	2 cut(s)	321, 1220
AdeI	CACNNNGTG	1 cut(s)	941
AfaI	GTAC	5 cut(s)	145, 211, 1248, 1402, 1994
AfiI	CCNNNNNNNGG	7 cut(s)	256, 466, 766, 1043, 1047, 1640, 1876
AflII	CTTAAG	1 cut(s)	2017
AflIII	ACRYGT	2 cut(s)	878, 885
AgsI	TTSAA	8 cut(s)	428, 1103, 1195, 1548, 1565, 1639, 1687, 2144
AjiI	CACGTC	2 cut(s)	190, 1501
AjnI	CCWGG	7 cut(s)	183, 562, 977, 1159, 1828, 1894, 2023
AjuI	GAANNNNNNNTTGG	4 cut(s)	1545, 1577, 1679, 1711
AloI	GAACNNNNNNTCC	1 cut(s)	2211
Alw21I	GWGCWC	1 cut(s)	1314
Alw26I	GTCTC	7 cut(s)	107, 420, 689, 1067, 1386, 1849, 2145
Ama87I	CYCGRG	1 cut(s)	459
Aor13HI	TCCGGA	1 cut(s)	2216
AoxI	GGCC	5 cut(s)	456, 552, 606, 1698, 2021
ApeKI	GCWGC	4 cut(s)	1622, 1880, 1934, 1979
ApoI	RAATTY	5 cut(s)	1234, 1298, 1339, 1361, 2135
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	1 cut(s)	1691
AspA2I	CCTAGG	1 cut(s)	1184
AspLEI	GCGC	1 cut(s)	1222
AsuC2I	CCSGG	1 cut(s)	1577
AsuHPI	GGTGA	4 cut(s)	676, 733, 823, 855
AsuII	TTCGAA	2 cut(s)	589, 1514
AsuNHI	GCTAGC	1 cut(s)	1982
AvaI	CYCGRG	1 cut(s)	459
AvaII	GGWCC	9 cut(s)	286, 446, 836, 1631, 1643, 1648, 1892, 2046, 2057
AvrII	CCTAGG	1 cut(s)	1184
AxyI	CCTNAGG	1 cut(s)	1013
BaeGI	GKGCMC	1 cut(s)	1420
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	1219
BanII	GRGCYC	1 cut(s)	1314
BbrPI	CACGTG	1 cut(s)	1730
BbsI	GAAGAC	1 cut(s)	1160
Bbv12I	GWGCWC	1 cut(s)	1314
BbvCI	CCTCAGC	1 cut(s)	1491
BbvI	GCAGC	4 cut(s)	1634, 1867, 1946, 1991
BccI	CCATC	4 cut(s)	866, 1430, 2057, 2141
BceAI	ACGGC	3 cut(s)	243, 1583, 2092
BciT130I	CCWGG	7 cut(s)	185, 564, 979, 1161, 1830, 1896, 2025
BciVI	GTATCC	1 cut(s)	781
BclI	TGATCA	3 cut(s)	114, 709, 1119
BcnI	CCSGG	1 cut(s)	1577
BcoDI	GTCTC	7 cut(s)	107, 420, 689, 1067, 1386, 1849, 2145
BfaI	CTAG	9 cut(s)	98, 548, 761, 926, 939, 1185, 1385, 1983, 2087
BfmI	CTRYAG	1 cut(s)	1884
BfoI	RGCGCY	1 cut(s)	1223
BfrI	CTTAAG	1 cut(s)	2017
BfuAI	ACCTGC	1 cut(s)	1720
BfuI	GTATCC	1 cut(s)	781
BglII	AGATCT	2 cut(s)	1372, 2029
BisI	GCNGC	7 cut(s)	629, 898, 1623, 1626, 1881, 1935, 1980
BlnI	CCTAGG	1 cut(s)	1184
BlsI	GCNGC	7 cut(s)	630, 899, 1624, 1627, 1882, 1936, 1981
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	8 cut(s)	185, 564, 979, 1161, 1577, 1830, 1896, 2025
Bme18I	GGWCC	9 cut(s)	286, 446, 836, 1631, 1643, 1648, 1892, 2046, 2057
BmeT110I	CYCGRG	1 cut(s)	459
BmgBI	CACGTC	2 cut(s)	190, 1501
BmiI	GGNNCC	7 cut(s)	32, 182, 288, 447, 1221, 1633, 2047
BmrFI	CCNGG	8 cut(s)	185, 564, 979, 1161, 1577, 1830, 1896, 2025
BmsI	GCATC	2 cut(s)	262, 1355
BmtI	GCTAGC	1 cut(s)	1986
BoxI	GACNNNNGTC	1 cut(s)	1830
BpiI	GAAGAC	1 cut(s)	1160
BplI	GAGNNNNNCTC	2 cut(s)	1514, 1546
BpmI	CTGGAG	2 cut(s)	278, 2046
Bpu10I	CCTNAGC	2 cut(s)	1491, 2061
Bpu14I	TTCGAA	2 cut(s)	589, 1514
BpuEI	CTTGAG	4 cut(s)	827, 1361, 1472, 1873
BpuMI	CCSGG	1 cut(s)	1577
BsaAI	YACGTR	1 cut(s)	1730
BsaBI	GATNNNNATC	2 cut(s)	972, 1801
BsaHI	GRCGYC	2 cut(s)	321, 1220
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	6 cut(s)	465, 977, 1184, 1701, 1828, 2035
BsaWI	WCCGGW	3 cut(s)	1645, 1915, 2216
BsaXI	ACNNNNNCTCC	2 cut(s)	2142, 2172
Bsc4I	CCNNNNNNNGG	7 cut(s)	256, 466, 766, 1043, 1047, 1640, 1876
Bse118I	RCCGGY	3 cut(s)	249, 1557, 1628
Bse1I	ACTGG	3 cut(s)	201, 1232, 2173
Bse21I	CCTNAGG	1 cut(s)	1013
Bse3DI	GCAATG	1 cut(s)	791
Bse8I	GATNNNNATC	2 cut(s)	972, 1801
BseAI	TCCGGA	1 cut(s)	2216
BseBI	CCWGG	7 cut(s)	185, 564, 979, 1161, 1830, 1896, 2025
BseDI	CCNNGG	6 cut(s)	465, 977, 1184, 1701, 1828, 2035
BseGI	GGATG	5 cut(s)	352, 973, 1346, 1441, 1927
BseJI	GATNNNNATC	2 cut(s)	972, 1801
BseLI	CCNNNNNNNGG	7 cut(s)	256, 466, 766, 1043, 1047, 1640, 1876
BseMI	GCAATG	1 cut(s)	791
BseMII	CTCAG	7 cut(s)	220, 1027, 1140, 1412, 1482, 1666, 2052
BseNI	ACTGG	3 cut(s)	201, 1232, 2173
BseRI	GAGGAG	2 cut(s)	682, 697
BseSI	GKGCMC	1 cut(s)	1420
BseXI	GCAGC	4 cut(s)	1634, 1867, 1946, 1991
Bsh1236I	CGCG	2 cut(s)	880, 887
Bsh1285I	CGRYCG	1 cut(s)	1576
BshFI	GGCC	5 cut(s)	458, 554, 608, 1700, 2023
BshNI	GGYRCC	1 cut(s)	1219
BsiEI	CGRYCG	1 cut(s)	1576
BsiHKAI	GWGCWC	1 cut(s)	1314
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	8 cut(s)	237, 250, 1558, 1576, 1629, 1646, 1916, 2217
BslFI	GGGAC	4 cut(s)	1077, 1617, 1719, 2059
BslI	CCNNNNNNNGG	7 cut(s)	256, 466, 766, 1043, 1047, 1640, 1876
BsmAI	GTCTC	7 cut(s)	107, 420, 689, 1067, 1386, 1849, 2145
BsmBI	CGTCTC	1 cut(s)	2145
BsmFI	GGGAC	4 cut(s)	1077, 1617, 1719, 2059
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	5 cut(s)	458, 554, 608, 1700, 2023
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	459
Bsp119I	TTCGAA	2 cut(s)	589, 1514
Bsp1286I	GDGCHC	2 cut(s)	1314, 1420
Bsp13I	TCCGGA	1 cut(s)	2216
Bsp1407I	TGTACA	1 cut(s)	1400
BspACI	CCGC	8 cut(s)	234, 247, 629, 834, 898, 1044, 1168, 1626
BspANI	GGCC	5 cut(s)	458, 554, 608, 1700, 2023
BspCNI	CTCAG	7 cut(s)	219, 1026, 1141, 1413, 1483, 1665, 2053
BspEI	TCCGGA	1 cut(s)	2216
BspFNI	CGCG	2 cut(s)	880, 887
BspLI	GGNNCC	7 cut(s)	32, 182, 288, 447, 1221, 1633, 2047
BspMI	ACCTGC	1 cut(s)	1720
BspOI	GCTAGC	1 cut(s)	1986
BspT104I	TTCGAA	2 cut(s)	589, 1514
BspT107I	GGYRCC	1 cut(s)	1219
BspTI	CTTAAG	1 cut(s)	2017
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	900
BsrDI	GCAATG	1 cut(s)	791
BsrFI	RCCGGY	3 cut(s)	249, 1557, 1628
BsrGI	TGTACA	1 cut(s)	1400
BsrI	ACTGG	3 cut(s)	201, 1232, 2173
BssAI	RCCGGY	3 cut(s)	249, 1557, 1628
BssECI	CCNNGG	6 cut(s)	465, 977, 1184, 1701, 1828, 2035
BssNI	GRCGYC	2 cut(s)	321, 1220
BssT1I	CCWWGG	4 cut(s)	465, 1184, 1701, 2035
Bst2UI	CCWGG	7 cut(s)	185, 564, 979, 1161, 1830, 1896, 2025
Bst4CI	ACNGT	4 cut(s)	617, 1415, 1643, 1992
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	2 cut(s)	321, 1220
BstAFI	CTTAAG	1 cut(s)	2017
BstAPI	GCANNNNNTGC	1 cut(s)	657
BstAUI	TGTACA	1 cut(s)	1400
BstBAI	YACGTR	1 cut(s)	1730
BstBI	TTCGAA	2 cut(s)	589, 1514
BstC8I	GCNNGC	3 cut(s)	251, 1356, 1984
BstDEI	CTNAG	7 cut(s)	206, 1013, 1149, 1421, 1491, 1652, 2061
BstENI	CCTNNNNNAGG	1 cut(s)	764
BstF5I	GGATG	5 cut(s)	352, 973, 1346, 1441, 1927
BstFNI	CGCG	2 cut(s)	880, 887
BstH2I	RGCGCY	1 cut(s)	1223
BstHHI	GCGC	1 cut(s)	1222
BstMAI	GTCTC	7 cut(s)	107, 420, 689, 1067, 1386, 1849, 2145
BstMCI	CGRYCG	1 cut(s)	1576
BstMWI	GCNNNNNNNGC	5 cut(s)	657, 955, 1286, 1567, 1622
BstNI	CCWGG	7 cut(s)	185, 564, 979, 1161, 1830, 1896, 2025
BstPAI	GACNNNNGTC	1 cut(s)	1830
BstSCI	CCNGG	8 cut(s)	183, 562, 977, 1159, 1575, 1828, 1894, 2023
BstSFI	CTRYAG	1 cut(s)	1884
BstSLI	GKGCMC	1 cut(s)	1420
BstUI	CGCG	2 cut(s)	880, 887
BstV1I	GCAGC	4 cut(s)	1634, 1867, 1946, 1991
BstV2I	GAAGAC	1 cut(s)	1160
BstX2I	RGATCY	2 cut(s)	1372, 2029
BstYI	RGATCY	2 cut(s)	1372, 2029
Bsu36I	CCTNAGG	1 cut(s)	1013
BsuI	GTATCC	1 cut(s)	781
BsuRI	GGCC	5 cut(s)	458, 554, 608, 1700, 2023
BtrI	CACGTC	2 cut(s)	190, 1501
BtsCI	GGATG	5 cut(s)	352, 973, 1346, 1441, 1927
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	477, 2059
BveI	ACCTGC	1 cut(s)	1720
Cac8I	GCNNGC	3 cut(s)	251, 1356, 1984
CfoI	GCGC	1 cut(s)	1222
Cfr10I	RCCGGY	3 cut(s)	249, 1557, 1628
CpoI	CGGWCCG	1 cut(s)	1643
CseI	GACGC	3 cut(s)	232, 876, 1335
Csp6I	GTAC	5 cut(s)	144, 210, 1247, 1401, 1993
CspI	CGGWCCG	1 cut(s)	1643
CviAII	CATG	7 cut(s)	118, 903, 1330, 1351, 1755, 1780, 2097
CviQI	GTAC	5 cut(s)	144, 210, 1247, 1401, 1993
DdeI	CTNAG	7 cut(s)	206, 1013, 1149, 1421, 1491, 1652, 2061
DinI	GGCGCC	1 cut(s)	1221
DraI	TTTAAA	1 cut(s)	1027
DraIII	CACNNNGTG	1 cut(s)	941
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	1312
Eco130I	CCWWGG	4 cut(s)	465, 1184, 1701, 2035
Eco147I	AGGCCT	1 cut(s)	2023
Eco24I	GRGCYC	1 cut(s)	1314
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	1132
Eco47I	GGWCC	9 cut(s)	286, 446, 836, 1631, 1643, 1648, 1892, 2046, 2057
Eco53kI	GAGCTC	1 cut(s)	1312
Eco57I	CTGAAG	1 cut(s)	1724
Eco72I	CACGTG	1 cut(s)	1730
Eco81I	CCTNAGG	1 cut(s)	1013
Eco88I	CYCGRG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	1312
EcoNI	CCTNNNNNAGG	1 cut(s)	764
EcoO109I	RGGNCCY	2 cut(s)	446, 553
EcoRII	CCWGG	7 cut(s)	183, 562, 977, 1159, 1828, 1894, 2023
EcoRV	GATATC	1 cut(s)	1132
EcoT14I	CCWWGG	4 cut(s)	465, 1184, 1701, 2035
EcoT38I	GRGCYC	1 cut(s)	1314
EgeI	GGCGCC	1 cut(s)	1221
EheI	GGCGCC	1 cut(s)	1221
ErhI	CCWWGG	4 cut(s)	465, 1184, 1701, 2035
Esp3I	CGTCTC	1 cut(s)	2145
FaeI	CATG	7 cut(s)	121, 906, 1333, 1354, 1758, 1783, 2100
FalI	AAGNNNNNCTT	2 cut(s)	986, 1018
FaqI	GGGAC	4 cut(s)	1077, 1617, 1719, 2059
FatI	CATG	7 cut(s)	117, 902, 1329, 1350, 1754, 1779, 2096
FbaI	TGATCA	3 cut(s)	114, 709, 1119
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	7 cut(s)	629, 898, 1623, 1626, 1881, 1935, 1980
FokI	GGATG	5 cut(s)	359, 960, 1333, 1448, 1934
FriOI	GRGCYC	1 cut(s)	1314
Fsp4HI	GCNGC	7 cut(s)	629, 898, 1623, 1626, 1881, 1935, 1980
FspBI	CTAG	9 cut(s)	98, 548, 761, 926, 939, 1185, 1385, 1983, 2087
GlaI	GCGC	1 cut(s)	1221
GluI	GCNGC	7 cut(s)	629, 898, 1623, 1626, 1881, 1935, 1980
GsuI	CTGGAG	2 cut(s)	278, 2046
HaeII	RGCGCY	1 cut(s)	1223
HaeIII	GGCC	5 cut(s)	458, 554, 608, 1700, 2023
HapII	CCGG	8 cut(s)	237, 250, 1558, 1576, 1629, 1646, 1916, 2217
HgaI	GACGC	3 cut(s)	232, 876, 1335
HhaI	GCGC	1 cut(s)	1222
Hin1I	GRCGYC	2 cut(s)	321, 1220
Hin1II	CATG	7 cut(s)	121, 906, 1333, 1354, 1758, 1783, 2100
Hin6I	GCGC	1 cut(s)	1220
HinP1I	GCGC	1 cut(s)	1220
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	73
HpaII	CCGG	8 cut(s)	237, 250, 1558, 1576, 1629, 1646, 1916, 2217
HphI	GGTGA	4 cut(s)	676, 733, 823, 855
Hpy166II	GTNNAC	4 cut(s)	82, 839, 1401, 2057
Hpy8I	GTNNAC	4 cut(s)	82, 839, 1401, 2057
Hpy99I	CGWCG	4 cut(s)	323, 1505, 1797, 2126
HpyAV	CCTTC	7 cut(s)	30, 256, 329, 350, 730, 1645, 1714
HpyCH4III	ACNGT	4 cut(s)	617, 1415, 1643, 1992
HpyCH4IV	ACGT	7 cut(s)	189, 321, 1090, 1500, 1729, 1866, 2124
HpyCH4V	TGCA	7 cut(s)	511, 651, 660, 1296, 1774, 1979, 2013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	657, 955, 1286, 1567, 1622
HpyF3I	CTNAG	7 cut(s)	206, 1013, 1149, 1421, 1491, 1652, 2061
HpySE526I	ACGT	7 cut(s)	189, 321, 1090, 1500, 1729, 1866, 2124
Hsp92I	GRCGYC	2 cut(s)	321, 1220
Hsp92II	CATG	7 cut(s)	121, 906, 1333, 1354, 1758, 1783, 2100
HspAI	GCGC	1 cut(s)	1220
KasI	GGCGCC	1 cut(s)	1219
Kpn2I	TCCGGA	1 cut(s)	2216
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
Ksp22I	TGATCA	3 cut(s)	114, 709, 1119
LmnI	GCTCC	2 cut(s)	186, 2219
Lsp1109I	GCAGC	4 cut(s)	1634, 1867, 1946, 1991
LweI	GCATC	2 cut(s)	262, 1355
MaeI	CTAG	9 cut(s)	98, 548, 761, 926, 939, 1185, 1385, 1983, 2087
MaeII	ACGT	7 cut(s)	189, 321, 1090, 1500, 1729, 1866, 2124
MaeIII	GTNAC	3 cut(s)	881, 1439, 2125
MbiI	CCGCTC	1 cut(s)	900
MfeI	CAATTG	1 cut(s)	1769
MflI	RGATCY	2 cut(s)	1372, 2029
MhlI	GDGCHC	2 cut(s)	1314, 1420
MlsI	TGGCCA	1 cut(s)	608
MluI	ACGCGT	2 cut(s)	878, 885
MluNI	TGGCCA	1 cut(s)	608
Mly113I	GGCGCC	1 cut(s)	1220
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	3 cut(s)	418, 1028, 1584
Mox20I	TGGCCA	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	2216
MroNI	GCCGGC	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	1691
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	5 cut(s)	633, 639, 1026, 2018, 2117
MslI	CAYNNNNRTG	1 cut(s)	1115
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	1044
MspCI	CTTAAG	1 cut(s)	2017
MspI	CCGG	8 cut(s)	237, 250, 1558, 1576, 1629, 1646, 1916, 2217
MspR9I	CCNGG	8 cut(s)	185, 564, 979, 1161, 1577, 1830, 1896, 2025
MunI	CAATTG	1 cut(s)	1769
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	7 cut(s)	185, 564, 979, 1161, 1830, 1896, 2025
MvnI	CGCG	2 cut(s)	880, 887
MwoI	GCNNNNNNNGC	5 cut(s)	657, 955, 1286, 1567, 1622
NaeI	GCCGGC	1 cut(s)	251
NarI	GGCGCC	1 cut(s)	1220
NciI	CCSGG	1 cut(s)	1577
NgoMIV	GCCGGC	1 cut(s)	249
NheI	GCTAGC	1 cut(s)	1982
NlaIII	CATG	7 cut(s)	121, 906, 1333, 1354, 1758, 1783, 2100
NlaIV	GGNNCC	7 cut(s)	32, 182, 288, 447, 1221, 1633, 2047
NmuCI	GTSAC	1 cut(s)	1439
NspV	TTCGAA	2 cut(s)	589, 1514
PceI	AGGCCT	1 cut(s)	2023
PcsI	WCGNNNNNNNCGW	1 cut(s)	884
PctI	GAATGC	1 cut(s)	662
PdiI	GCCGGC	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	1691
PflFI	GACNNNGTC	1 cut(s)	2156
PflMI	CCANNNNNTGG	1 cut(s)	1047
PfoI	TCCNGGA	2 cut(s)	183, 1894
PkrI	GCNGC	7 cut(s)	630, 899, 1624, 1627, 1882, 1936, 1981
PleI	GAGTC	1 cut(s)	968
PluTI	GGCGCC	1 cut(s)	1223
PmaCI	CACGTG	1 cut(s)	1730
PmlI	CACGTG	1 cut(s)	1730
PpsI	GAGTC	1 cut(s)	968
Ppu21I	YACGTR	1 cut(s)	1730
PpuMI	RGGWCCY	1 cut(s)	446
PshAI	GACNNNNGTC	1 cut(s)	1830
PsiI	TTATAA	1 cut(s)	1269
Psp124BI	GAGCTC	1 cut(s)	1314
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	7 cut(s)	183, 562, 977, 1159, 1828, 1894, 2023
PspCI	CACGTG	1 cut(s)	1730
PspGI	CCWGG	7 cut(s)	183, 562, 977, 1159, 1828, 1894, 2023
PspN4I	GGNNCC	7 cut(s)	32, 182, 288, 447, 1221, 1633, 2047
PspPPI	RGGWCCY	1 cut(s)	446
PsrI	GAACNNNNNNTAC	2 cut(s)	1803, 1835
PsuI	RGATCY	2 cut(s)	1372, 2029
PsyI	GACNNNGTC	1 cut(s)	2156
RsaI	GTAC	5 cut(s)	145, 211, 1248, 1402, 1994
RsaNI	GTAC	5 cut(s)	144, 210, 1247, 1401, 1993
RseI	CAYNNNNRTG	1 cut(s)	1115
Rsr2I	CGGWCCG	1 cut(s)	1643
RsrII	CGGWCCG	1 cut(s)	1643
SacI	GAGCTC	1 cut(s)	1314
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	633, 639, 1026, 2018, 2117
SatI	GCNGC	7 cut(s)	629, 898, 1623, 1626, 1881, 1935, 1980
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	8 cut(s)	185, 564, 979, 1161, 1577, 1830, 1896, 2025
SduI	GDGCHC	2 cut(s)	1314, 1420
SfaNI	GCATC	2 cut(s)	262, 1355
SfcI	CTRYAG	1 cut(s)	1884
SfoI	GGCGCC	1 cut(s)	1221
SfuI	TTCGAA	2 cut(s)	589, 1514
SinI	GGWCC	9 cut(s)	286, 446, 836, 1631, 1643, 1648, 1892, 2046, 2057
SmiMI	CAYNNNNRTG	1 cut(s)	1115
SmlI	CTYRAG	5 cut(s)	842, 1376, 1451, 1852, 2017
SmoI	CTYRAG	5 cut(s)	842, 1376, 1451, 1852, 2017
SseBI	AGGCCT	1 cut(s)	2023
SsiI	CCGC	8 cut(s)	234, 247, 629, 834, 898, 1044, 1168, 1626
SspDI	GGCGCC	1 cut(s)	1219
SspMI	CTAG	9 cut(s)	98, 548, 761, 926, 939, 1185, 1385, 1983, 2087
SstI	GAGCTC	1 cut(s)	1314
StuI	AGGCCT	1 cut(s)	2023
StyD4I	CCNGG	8 cut(s)	183, 562, 977, 1159, 1575, 1828, 1894, 2023
StyI	CCWWGG	4 cut(s)	465, 1184, 1701, 2035
TaaI	ACNGT	4 cut(s)	617, 1415, 1643, 1992
TaiI	ACGT	7 cut(s)	192, 324, 1093, 1503, 1732, 1869, 2127
TaqII	GACCGA	1 cut(s)	73
TatI	WGTACW	3 cut(s)	143, 209, 1400
TauI	GCSGC	3 cut(s)	631, 900, 1628
Tru1I	TTAA	5 cut(s)	633, 639, 1026, 2018, 2117
Tru9I	TTAA	5 cut(s)	633, 639, 1026, 2018, 2117
TscAI	CASTG	2 cut(s)	477, 2059
TseFI	GTSAC	1 cut(s)	1439
TseI	GCWGC	4 cut(s)	1622, 1880, 1934, 1979
Tsp45I	GTSAC	1 cut(s)	1439
TspDTI	ATGAA	7 cut(s)	17, 369, 569, 995, 1743, 1917, 1979
TspGWI	ACGGA	1 cut(s)	880
TspRI	CASTG	2 cut(s)	477, 2059
Tth111I	GACNNNGTC	1 cut(s)	2156
Van91I	CCANNNNNTGG	1 cut(s)	1047
Vha464I	CTTAAG	1 cut(s)	2017
VpaK11BI	GGWCC	9 cut(s)	286, 446, 836, 1631, 1643, 1648, 1892, 2046, 2057
XagI	CCTNNNNNAGG	1 cut(s)	764
XapI	RAATTY	5 cut(s)	1234, 1298, 1339, 1361, 2135
XbaI	TCTAGA	1 cut(s)	1384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XmaJI	CCTAGG	1 cut(s)	1184
XmiI	GTMKAC	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	1691
XspI	CTAG	9 cut(s)	98, 548, 761, 926, 939, 1185, 1385, 1983, 2087
ZraI	GACGTC	1 cut(s)	322
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.