Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2188149 .. 2188614

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCATATGTATGGACATTCCAGGACACCAGAACTGCGGAATCTCATTTTACCTGATGAGTTGTGGGACCATATATTTATCAAGTTGGCGCCCAACTGGAAGAATTTGAGAAAAGTACGCATATACATTTCTGCTTATAATTTTGTTGCTCTCCAAGCTAATTGCAAATTTATATGTGAGCTCAATTTGTATGGACTTATGGACGAGAATTTAGCATCCATGCTCGCTAAATTTTTTCCAAATCTCAAGTCTCTAGAGATTCGTGGGTGTACAATGTCGAACCTTGTTCTCAGAATCATATCGGATGGTCATAAGAATCTTGAGCTACTTGATACACAACAGTACTTCTACCATTTTGCTGAGGCTCACGTCGAATCAAGTTCGAAACCAGAGATGTCAGGAATTATCAAGCAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.36

Weight (kDa)

8.76

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	1 cut(s)	37
AcsI	RAATTY	4 cut(s)	103, 167, 208, 230
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	3 cut(s)	117, 271, 344
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	158, 181, 325
AluI	AGCT	3 cut(s)	158, 181, 325
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	255
ApoI	RAATTY	4 cut(s)	103, 167, 208, 230
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	92
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	68, 90
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	383
BpuEI	CTTGAG	2 cut(s)	230, 341
BsaHI	GRCGYC	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	215, 310
BseMII	CTCAG	2 cut(s)	304, 351
BseNI	ACTGG	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	269
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	303, 352
BspLI	GGNNCC	2 cut(s)	68, 90
BspT104I	TTCGAA	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	88
BsrGI	TGTACA	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	101
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	290, 360
BstF5I	GGATG	2 cut(s)	215, 310
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	215, 310
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	116, 270, 343
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	4 cut(s)	158, 181, 325, 365
CviKI_1	RGCY	4 cut(s)	158, 181, 325, 365
CviQI	GTAC	3 cut(s)	116, 270, 343
DdeI	CTNAG	2 cut(s)	290, 360
DinI	GGCGCC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	20
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	183
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaeI	CATG	1 cut(s)	223
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	219
FauNDI	CATATG	1 cut(s)	6
FokI	GGATG	2 cut(s)	202, 317
FriOI	GRGCYC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	5 cut(s)	40, 259, 294, 316, 374
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	293, 304
Hpy188III	TCNNGA	3 cut(s)	254, 320, 399
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	4, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	290, 360
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	89
KasI	GGCGCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	7, 34, 42, 66, 82, 384, 402
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	369
MboII	GAAGA	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	8 cut(s)	103, 139, 160, 167, 184, 208, 230, 402
Mly113I	GGCGCC	1 cut(s)	89
MnlI	CCTC	1 cut(s)	355
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	155
NarI	GGCGCC	1 cut(s)	89
NdeI	CATATG	1 cut(s)	6
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	68, 90
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	383
PfeI	GAWTC	5 cut(s)	40, 259, 294, 316, 374
PfoI	TCCNGGA	1 cut(s)	20
PluTI	GGCGCC	1 cut(s)	92
PsiI	TTATAA	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	68, 90
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	3 cut(s)	117, 271, 344
RsaNI	GTAC	3 cut(s)	116, 270, 343
RseI	CAYNNNNRTG	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	6 cut(s)	55, 160, 183, 285, 327, 372
SfaNI	GCATC	1 cut(s)	224
SfoI	GGCGCC	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	383
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	245, 320
SmoI	CTYRAG	2 cut(s)	245, 320
Sse9I	AATT	8 cut(s)	103, 139, 160, 167, 184, 208, 230, 402
SsiI	CCGC	1 cut(s)	37
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	3 cut(s)	278, 372, 383
TasI	AATT	8 cut(s)	103, 139, 160, 167, 184, 208, 230, 402
TatI	WGTACW	2 cut(s)	269, 342
TfiI	GAWTC	5 cut(s)	40, 259, 294, 316, 374
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	4 cut(s)	103, 167, 208, 230
XbaI	TCTAGA	1 cut(s)	253
XspI	CTAG	1 cut(s)	254
ZrmI	AGTACT	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.