Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000231.1

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 749

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000231.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 508 bp

atgatcaagttacgtacatcctcggtaccgaatcacacgcacctcctggcactgctagcggatatccttagcacttgggatctggaggccgccaccgccggaagcgttcgccggcatctggaggaagattttcgggttgatctatcgaacccagaacaccgttccatccaagaatatatcgatatcttttttgatgatgggaaagaggatgtgaatgaaagcaagggtacaaaaagaaatagaaagagaaagagaaagagaaaggtgccggagatatgtagggtgtctccacagcttcaggagcttgtaggaggaggatccgaaatgacgcgagcggaggctgtgaagaaaattgtggcttatagccgggaaaagggtttgctaactgcagagaggatcatagtaacagatgataaactagatgcccttcttcccaaatgtaaatttatttgtatattacgactagattacctcttgtcccagcatgggcatatgcaatcgcttagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

169

Amino Acids

19.38

Weight (kDa)

9.17

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	25
AccB1I	GGYRCC	2 cut(s)	25, 265
AccBSI	CCGCTC	1 cut(s)	335
AccII	CGCG	1 cut(s)	331
AciI	CCGC	4 cut(s)	59, 90, 96, 335
AclWI	GGATC	4 cut(s)	87, 312, 325, 404
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	3 cut(s)	16, 27, 229
AfiI	CCNNNNNNNGG	3 cut(s)	118, 373, 486
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	295, 304
AluI	AGCT	2 cut(s)	295, 304
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	4 cut(s)	87, 312, 325, 404
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	129
Asp718I	GGTACC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	368
AsuNHI	GCTAGC	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	317
BanI	GGYRCC	2 cut(s)	25, 265
BccI	CCATC	2 cut(s)	173, 191
BciT130I	CCWGG	1 cut(s)	47
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	3 cut(s)	56, 419, 464
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	47, 368
BmiI	GGNNCC	3 cut(s)	27, 267, 319
BmrFI	CCNGG	2 cut(s)	47, 368
BmsI	GCATC	2 cut(s)	124, 412
BmtI	GCTAGC	1 cut(s)	59
BpmI	CTGGAG	2 cut(s)	104, 140
Bpu10I	CCTNAGC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 373, 486
Bse118I	RCCGGY	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	47
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	3 cut(s)	17, 165, 214
BseLI	CCNNNNNNNGG	3 cut(s)	118, 373, 486
BseRI	GAGGAG	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	2 cut(s)	25, 265
BshVI	ATCGAT	1 cut(s)	180
BsiSI	CCGG	4 cut(s)	99, 112, 269, 367
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	3 cut(s)	118, 373, 486
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	3, 79, 139, 317, 396
BspACI	CCGC	4 cut(s)	59, 90, 96, 335
BspANI	GGCC	1 cut(s)	89
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	27, 267, 319
BspMAI	CTGCAG	1 cut(s)	391
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	4 cut(s)	87, 312, 325, 404
BspT107I	GGYRCC	2 cut(s)	25, 265
BsrBI	CCGCTC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	5 cut(s)	3, 79, 139, 317, 396
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	57, 113, 333
BstDEI	CTNAG	2 cut(s)	68, 503
BstF5I	GGATG	3 cut(s)	17, 165, 214
BstFNI	CGCG	1 cut(s)	331
BstKTI	GATC	5 cut(s)	6, 82, 142, 320, 399
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	5 cut(s)	3, 79, 139, 317, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 95, 301
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	45, 366
BstSFI	CTRYAG	1 cut(s)	387
BstSNI	TACGTA	1 cut(s)	14
BstUI	CGCG	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	79, 317
BstYI	RGATCY	2 cut(s)	79, 317
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	17, 165, 214
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	57, 113, 333
Cfr10I	RCCGGY	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	15, 26, 228
CviAII	CATG	1 cut(s)	485
CviJI	RGCY	6 cut(s)	89, 295, 304, 341, 359, 366
CviKI_1	RGCY	6 cut(s)	89, 295, 304, 341, 359, 366
CviQI	GTAC	3 cut(s)	15, 26, 228
DdeI	CTNAG	2 cut(s)	68, 503
DpnI	GATC	5 cut(s)	5, 81, 141, 319, 398
DpnII	GATC	5 cut(s)	3, 79, 139, 317, 396
Eco105I	TACGTA	1 cut(s)	14
Eco32I	GATATC	2 cut(s)	64, 184
Eco57I	CTGAAG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	45
EcoRV	GATATC	2 cut(s)	64, 184
FaeI	CATG	1 cut(s)	488
FaiI	YATR	8 cut(s)	177, 277, 363, 401, 455, 486, 492, 494
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	1 cut(s)	484
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	3 cut(s)	4, 152, 221
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	3 cut(s)	56, 419, 464
GluI	GCNGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	484
GsuI	CTGGAG	2 cut(s)	104, 140
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	4 cut(s)	99, 112, 269, 367
HgaI	GACGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	488
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	4 cut(s)	99, 112, 269, 367
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	3 cut(s)	83, 119, 299
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	389, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 95, 301
HpyF3I	CTNAG	2 cut(s)	68, 503
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	488
KpnI	GGTACC	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	111
KroNI	GCCGGC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 79, 139, 317, 396
LmnI	GCTCC	1 cut(s)	301
LweI	GCATC	2 cut(s)	124, 412
MaeI	CTAG	3 cut(s)	56, 419, 464
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	9, 403
MalI	GATC	5 cut(s)	5, 81, 141, 319, 398
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	5 cut(s)	3, 79, 139, 317, 396
MboII	GAAGA	3 cut(s)	137, 358, 422
MflI	RGATCY	2 cut(s)	79, 317
MluCI	AATT	2 cut(s)	351, 443
MroNI	GCCGGC	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	129
MspI	CCGG	4 cut(s)	99, 112, 269, 367
MspR9I	CCNGG	2 cut(s)	47, 368
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	56, 95, 301
NaeI	GCCGGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	368
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	5 cut(s)	3, 79, 139, 317, 396
NgoMIV	GCCGGC	1 cut(s)	111
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	3 cut(s)	27, 267, 319
PdiI	GCCGGC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	27, 267, 319
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	79, 317
RsaI	GTAC	3 cut(s)	16, 27, 229
RsaNI	GTAC	3 cut(s)	15, 26, 228
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	5 cut(s)	3, 79, 139, 317, 396
ScrFI	CCNGG	2 cut(s)	47, 368
SetI	ASST	6 cut(s)	16, 45, 267, 297, 306, 474
SfaNI	GCATC	2 cut(s)	124, 412
SfcI	CTRYAG	1 cut(s)	387
SnaBI	TACGTA	1 cut(s)	14
Sse9I	AATT	2 cut(s)	351, 443
SsiI	CCGC	4 cut(s)	59, 90, 96, 335
SspMI	CTAG	3 cut(s)	56, 419, 464
StyD4I	CCNGG	2 cut(s)	45, 366
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	146, 180
TasI	AATT	2 cut(s)	351, 443
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	3 cut(s)	56, 419, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.