Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Forward (+)

79824272 .. 79827398

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG581900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGACGCGAGCGGAGGCTGTGAAGAAAATTGTGGCTTATAGCCGGGAAAAGGGTTTGCTAACTGCAGAGAGGATCATAGTAACAGATGATAAACTAGATGCCCTTCTTCCCAAATGTAAATTTATTTTTATATTACGACTAGATTACCTCTTGTCCCAGCATTGGCACATGCAATCGCTTAGAGTTGCCAAAGATGATGGCGGGGTGAGGAAGGGGAAGAGGAACAATGAAGCAAATGGTAAAAGATCTGAGAATTGTGAAGGTGATCAAGTTAGGGTGAAAAAGAAGAGGAACAATATTAAAAGAAACATTAACCTCGCACTAGCAGAGGAAGATGTGCGACCGTGGGATACAATGCCAGAAGATATTATGGTAAAAATCTTTAAGCTATTACCATTTCCATATTGGTCATTCTATCCCTGTTATGTTTGCCGTTCATGGCAATTGGCAGTGGCCGATGTAATGTTTCCACCTAATAACAATGAGCTTGATCTGCGGCTCCTTGATTCATATCCCTGGAAATCAAGGGAAAGAGTTTTACTCCTATACCTCAGGATTGTCTTAAATTCCCGACCCGCCATCCCTTGGGTAACACTTTACTTGCCCGAGCGGACTGCATTCATCACCAGTGAAGTCCTCACTCGGATCGCTCAAAAGACACCGGAACTACTTAATCTTTCTGTACCTAAAAAGTTGAGGGGAGATGTTTTTCTTGAGTCAGTTACACCGAAGTGGAAGAATTTGAGAATGGTATACATCGACATTTCTGCAAATAATTTTTCTCATCTCCAAGCTAATTGCACATTTATAAGTGAGCTTAGTTTATATGGATGGATGGACGATGATTCAGCATCCATGCTAGCTAAATCTTTTCCAAATCTCAAGTCTCTAGAGATTTATGGGTGTACAATGTCGAACCATACCCTAGGAATCATAATGGATGGTCACAAGAATCTCAAGCTAGTTGCTACACGAAAGAAGAACTTCTACCACCATGTTGACCTACTCGGTCACAAGTTGGTTGAGGCATTTACACGAGGAAACTACTACCGTTTTGAGACTTGTGTGGAGCTGGAGTTGGAGAGAACATTTGCTGGGTTTAACCCTATATATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

372

Amino Acids

43.34

Weight (kDa)

9.3

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	809
AccB7I	CCANNNNNTGG	1 cut(s)	585
AccBSI	CCGCTC	2 cut(s)	11, 610
AccI	GTMKAC	1 cut(s)	753
AccII	CGCG	1 cut(s)	7
AciI	CCGC	5 cut(s)	11, 201, 496, 576, 610
AclWI	GGATC	2 cut(s)	80, 653
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	3 cut(s)	119, 565, 739
AfaI	GTAC	2 cut(s)	684, 907
AfiI	CCNNNNNNNGG	3 cut(s)	49, 162, 585
AjnI	CCWGG	1 cut(s)	515
AleI	CACNNNNGTG	1 cut(s)	730
AluBI	AGCT	7 cut(s)	388, 487, 794, 817, 863, 961, 1072
AluI	AGCT	7 cut(s)	388, 487, 794, 817, 863, 961, 1072
Alw26I	GTCTC	2 cut(s)	891, 1052
AlwI	GGATC	2 cut(s)	80, 653
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	453
ApoI	RAATTY	3 cut(s)	119, 565, 739
ArsI	GACNNNNNNTTYG	2 cut(s)	869, 901
Asp700I	GAANNNNTTC	1 cut(s)	983
AspA2I	CCTAGG	1 cut(s)	925
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	217, 275, 289, 616
AsuNHI	GCTAGC	1 cut(s)	859
AvaI	CYCGRG	1 cut(s)	605
AvrII	CCTAGG	1 cut(s)	925
AxyI	CCTNAGG	1 cut(s)	551
BarI	GAAGNNNNNNTAC	2 cut(s)	971, 1003
BauI	CACGAG	1 cut(s)	1035
BccI	CCATC	5 cut(s)	191, 587, 825, 829, 935
BceAI	ACGGC	1 cut(s)	417
BcgI	CGANNNNNNTGC	4 cut(s)	596, 630, 749, 783
BciT130I	CCWGG	1 cut(s)	517
BciVI	GTATCC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	891, 1052
BfaI	CTAG	7 cut(s)	95, 140, 323, 860, 890, 926, 962
BfmI	CTRYAG	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	1 cut(s)	497
BlnI	CCTAGG	1 cut(s)	925
BlsI	GCNGC	1 cut(s)	498
Bme1390I	CCNGG	2 cut(s)	44, 517
BmeT110I	CYCGRG	1 cut(s)	605
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	2 cut(s)	44, 517
BmsI	GCATC	2 cut(s)	88, 860
BmtI	GCTAGC	1 cut(s)	863
BplI	GAGNNNNNCTC	2 cut(s)	525, 557
BpmI	CTGGAG	1 cut(s)	1094
BpuEI	CTTGAG	3 cut(s)	734, 866, 941
BpuMI	CCSGG	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	4 cut(s)	344, 515, 584, 925
BsaWI	WCCGGW	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	1061, 1091
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 162, 585
Bse1I	ACTGG	1 cut(s)	627
Bse21I	CCTNAGG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	4 cut(s)	344, 515, 584, 925
BseGI	GGATG	5 cut(s)	579, 836, 840, 851, 946
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	49, 162, 585
BseMII	CTCAG	2 cut(s)	240, 565
BseNI	ACTGG	1 cut(s)	627
BseYI	CCCAGC	2 cut(s)	156, 1094
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	455
BsiEI	CGRYCG	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	43, 662
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	49, 162, 585
BsmAI	GTCTC	2 cut(s)	891, 1052
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	605
Bsp1407I	TGTACA	1 cut(s)	905
Bsp143I	GATC	5 cut(s)	72, 245, 265, 490, 645
BspACI	CCGC	5 cut(s)	11, 201, 496, 576, 610
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	2 cut(s)	241, 564
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	500
BspMAI	CTGCAG	1 cut(s)	67
BspOI	GCTAGC	1 cut(s)	863
BspPI	GGATC	2 cut(s)	80, 653
BsrBI	CCGCTC	2 cut(s)	11, 610
BsrGI	TGTACA	1 cut(s)	905
BsrI	ACTGG	1 cut(s)	627
BssECI	CCNNGG	4 cut(s)	344, 515, 584, 925
BssMI	GATC	5 cut(s)	72, 245, 265, 490, 645
BssNAI	GTATAC	1 cut(s)	754
BssSI	CACGAG	1 cut(s)	1035
BssT1I	CCWWGG	2 cut(s)	584, 925
Bst1107I	GTATAC	1 cut(s)	754
Bst2BI	CACGAG	1 cut(s)	1035
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	345, 1052
Bst6I	CTCTTC	2 cut(s)	212, 281
BstAUI	TGTACA	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	9, 861
BstDEI	CTNAG	4 cut(s)	179, 249, 551, 818
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	5 cut(s)	579, 836, 840, 851, 946
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	5 cut(s)	75, 248, 268, 493, 648
BstMAI	GTCTC	2 cut(s)	891, 1052
BstMBI	GATC	5 cut(s)	72, 245, 265, 490, 645
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	1 cut(s)	517
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	42, 515
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BstZ17I	GTATAC	1 cut(s)	754
Bsu36I	CCTNAGG	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	344
BtsCI	GGATG	5 cut(s)	579, 836, 840, 851, 946
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	3 cut(s)	456, 634, 1114
Cac8I	GCNNGC	2 cut(s)	9, 861
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	683, 906
CviAII	CATG	4 cut(s)	169, 438, 856, 995
CviQI	GTAC	2 cut(s)	683, 906
DdeI	CTNAG	4 cut(s)	179, 249, 551, 818
DpnI	GATC	5 cut(s)	74, 247, 267, 492, 647
DpnII	GATC	5 cut(s)	72, 245, 265, 490, 645
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	212, 281
EarI	CTCTTC	2 cut(s)	212, 281
Eco130I	CCWWGG	2 cut(s)	584, 925
Eco81I	CCTNAGG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	584, 925
ErhI	CCWWGG	2 cut(s)	584, 925
FaeI	CATG	4 cut(s)	172, 441, 859, 998
FalI	AAGNNNNNCTT	2 cut(s)	968, 1000
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	4 cut(s)	168, 437, 855, 994
FauI	CCCGC	2 cut(s)	194, 583
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	753
Fnu4HI	GCNGC	1 cut(s)	497
FokI	GGATG	5 cut(s)	566, 838, 843, 847, 953
Fsp4HI	GCNGC	1 cut(s)	497
FspBI	CTAG	7 cut(s)	95, 140, 323, 860, 890, 926, 962
GluI	GCNGC	1 cut(s)	497
GsaI	CCCAGC	2 cut(s)	160, 1098
GsuI	CTGGAG	1 cut(s)	1094
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	2 cut(s)	43, 662
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	4 cut(s)	172, 441, 859, 998
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	5 cut(s)	506, 716, 845, 930, 952
HpaII	CCGG	2 cut(s)	43, 662
HphI	GGTGA	4 cut(s)	217, 275, 289, 616
Hpy166II	GTNNAC	3 cut(s)	754, 906, 1000
Hpy188I	TCNGA	2 cut(s)	250, 645
Hpy188III	TCNNGA	4 cut(s)	553, 570, 713, 890
Hpy8I	GTNNAC	3 cut(s)	754, 906, 1000
HpyAV	CCTTC	3 cut(s)	113, 205, 254
HpyCH4III	ACNGT	2 cut(s)	345, 1052
HpyCH4V	TGCA	5 cut(s)	65, 172, 617, 770, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	4 cut(s)	179, 249, 551, 818
Hsp92II	CATG	4 cut(s)	172, 441, 859, 998
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	72, 245, 265, 490, 645
LmnI	GCTCC	2 cut(s)	504, 1069
LweI	GCATC	2 cut(s)	88, 860
MaeI	CTAG	7 cut(s)	95, 140, 323, 860, 890, 926, 962
MaeIII	GTNAC	5 cut(s)	79, 589, 721, 944, 1010
MalI	GATC	5 cut(s)	74, 247, 267, 492, 647
MbiI	CCGCTC	2 cut(s)	11, 610
MboI	GATC	5 cut(s)	72, 245, 265, 490, 645
MboII	GAAGA	8 cut(s)	34, 98, 229, 298, 344, 374, 748, 991
MfeI	CAATTG	1 cut(s)	443
MflI	RGATCY	1 cut(s)	245
MluCI	AATT	8 cut(s)	27, 119, 253, 443, 565, 739, 775, 796
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	1059
MroXI	GAANNNNTTC	1 cut(s)	983
MseI	TTAA	6 cut(s)	300, 312, 384, 563, 672, 1101
MslI	CAYNNNNRTG	1 cut(s)	730
MspI	CCGG	2 cut(s)	43, 662
MspR9I	CCNGG	2 cut(s)	44, 517
MunI	CAATTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	517
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	493
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	5 cut(s)	72, 245, 265, 490, 645
NheI	GCTAGC	1 cut(s)	859
NlaIII	CATG	4 cut(s)	172, 441, 859, 998
NlaIV	GGNNCC	1 cut(s)	500
NmuCI	GTSAC	2 cut(s)	944, 1010
NspI	RCATGY	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	730
PctI	GAATGC	1 cut(s)	617
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	4 cut(s)	506, 845, 930, 952
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	1 cut(s)	498
PleI	GAGTC	1 cut(s)	724
PpsI	GAGTC	1 cut(s)	724
PsiI	TTATAA	1 cut(s)	809
Psp6I	CCWGG	1 cut(s)	515
PspFI	CCCAGC	2 cut(s)	156, 1094
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	1 cut(s)	500
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	2 cut(s)	684, 907
RsaNI	GTAC	2 cut(s)	683, 906
RseI	CAYNNNNRTG	1 cut(s)	730
SaqAI	TTAA	6 cut(s)	300, 312, 384, 563, 672, 1101
SatI	GCNGC	1 cut(s)	497
Sau3AI	GATC	5 cut(s)	72, 245, 265, 490, 645
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	2 cut(s)	44, 517
SfaNI	GCATC	2 cut(s)	88, 860
SfcI	CTRYAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	730
SmlI	CTYRAG	3 cut(s)	713, 881, 956
SmoI	CTYRAG	3 cut(s)	713, 881, 956
Sse9I	AATT	8 cut(s)	27, 119, 253, 443, 565, 739, 775, 796
SsiI	CCGC	5 cut(s)	11, 201, 496, 576, 610
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	7 cut(s)	95, 140, 323, 860, 890, 926, 962
StyD4I	CCNGG	2 cut(s)	42, 515
StyI	CCWWGG	2 cut(s)	584, 925
TaaI	ACNGT	2 cut(s)	345, 1052
TaqI	TCGA	2 cut(s)	759, 914
TaqII	GACCGA	1 cut(s)	998
TasI	AATT	8 cut(s)	27, 119, 253, 443, 565, 739, 775, 796
TatI	WGTACW	1 cut(s)	905
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	4 cut(s)	506, 845, 930, 952
Tru1I	TTAA	6 cut(s)	300, 312, 384, 563, 672, 1101
Tru9I	TTAA	6 cut(s)	300, 312, 384, 563, 672, 1101
TscAI	CASTG	2 cut(s)	456, 634
TseFI	GTSAC	2 cut(s)	944, 1010
Tsp45I	GTSAC	2 cut(s)	944, 1010
TspDTI	ATGAA	4 cut(s)	243, 426, 498, 610
TspRI	CASTG	2 cut(s)	456, 634
Van91I	CCANNNNNTGG	1 cut(s)	585
XapI	RAATTY	3 cut(s)	119, 565, 739
XbaI	TCTAGA	1 cut(s)	889
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	402
XmaJI	CCTAGG	1 cut(s)	925
XmiI	GTMKAC	1 cut(s)	753
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	7 cut(s)	95, 140, 323, 860, 890, 926, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.