Rw2G047160

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004529
Physical Location & Seq
Forward (+)
74552180 .. 74553704
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047160.1

Sequence Viewer

Length: 1119 bp
ATGACGCGAGCGGAGGCTGTGAAGAAAATTGTGGCTTATAGCCGGGAAAAGGGTTTGCTAACTGCAAAGAGGATCATAGTAACAGATGATAAACTAGATGCCCTTCTTCCCAAATGTAAATTTATTTTTATATTACGACTAGATTACCTCTTGTCCCAGCATTGGCATATGCAATCGCTTAGAGTTGCCAAAGATGATGGCGGGGTGAGGAAGGGGAAGAGGAACAATGAAGCAAATGGTAAAAGATCTGAGAATTGTGAAGGTGATCAAGTTAGGGTGAAAAAGAAGAGGAACAATATTAAAAGAAACATTAACCTCGCACTAGCAGAGGAAGATGTGCGACCGTGGGATACAATGCCAGAAGATATTATGGTAAAAATCTTTAAGCTATTACCATTTCCATATTGGTCATTCTATCCCTGTTATGTCTGCCGTTCATGGCAATTGGCAGTGGCCGATGTAATGTTTCCACCTAATAACAATGAGCTTGATCTGCGGCTCCTTGATTCATATCCCTGGAAATCAAGGGAAAGAGTTTTACTCCTATACCTCAGGATTGTCTTAAATTCCCGACCCGCCATCCCTTGGGTAACACTTTACTTGCCCGAGCGGACTGCATTCATCACCAGTGAAGTCCTCACTCGGATCGCTCAAAAGACACCGGAACTACTTAATCTTTCTGTACCTAAAAAGTTGAGGGGAGATGTTTTTCTTGAGTCAGTTACACCGAAGTGGAAGAATTTGAGAATGGTACACATCGACATTTGTGCAAATAATTTTTCTCATCTCCAAGCTAATTGCACATTTATAAGTGAGCTTAGTTTATATGGATGGATGGACGATGATTCAGCATCCATGCTAGCTAAATCTTTTCCAAATCTCAAGTCTCTAGAGATTTATGGGTGTACAATGTCGAACCATACCCTAGGAATCATAATGGATGGTCACAAGAATCTCAAGCTAGTTGCTACACGAAAGAAGAACTTCTACCACCATGTTGACCTACTCGGTCACAAGTTGGTTGAGGCATTTACACGAGGAAACTACTACCGTTTTGAGACTTGTGTGGAGCTGGAGTTGGAGAGAACATTTGCTGGGTTTAACCCTATATATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

372

Amino Acids

43.33

Weight (kDa)

9.37

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 1 - 54 6.3e-06 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 809
AccB7I CCANNNNNTGG 1 cut(s) 585
AccBSI CCGCTC 2 cut(s) 11, 610
AccII CGCG 1 cut(s) 7
AciI CCGC 5 cut(s) 11, 201, 496, 576, 610
AclWI GGATC 2 cut(s) 80, 653
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 3 cut(s) 119, 565, 739
AfaI GTAC 3 cut(s) 684, 753, 907
AfiI CCNNNNNNNGG 3 cut(s) 49, 162, 585
AjnI CCWGG 1 cut(s) 515
AleI CACNNNNGTG 1 cut(s) 730
AluBI AGCT 7 cut(s) 388, 487, 794, 817, 863, 961, 1072
AluI AGCT 7 cut(s) 388, 487, 794, 817, 863, 961, 1072
Alw26I GTCTC 2 cut(s) 891, 1052
AlwI GGATC 2 cut(s) 80, 653
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 1 cut(s) 453
ApoI RAATTY 3 cut(s) 119, 565, 739
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
Asp700I GAANNNNTTC 1 cut(s) 983
AspA2I CCTAGG 1 cut(s) 925
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 4 cut(s) 217, 275, 289, 616
AsuNHI GCTAGC 1 cut(s) 859
AvaI CYCGRG 1 cut(s) 605
AvrII CCTAGG 1 cut(s) 925
AxyI CCTNAGG 1 cut(s) 551
BarI GAAGNNNNNNTAC 2 cut(s) 971, 1003
BauI CACGAG 1 cut(s) 1035
BccI CCATC 5 cut(s) 191, 587, 825, 829, 935
BceAI ACGGC 1 cut(s) 417
BcgI CGANNNNNNTGC 4 cut(s) 596, 630, 749, 783
BciT130I CCWGG 1 cut(s) 517
BciVI GTATCC 1 cut(s) 343
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 891, 1052
BfaI CTAG 7 cut(s) 95, 140, 323, 860, 890, 926, 962
BfuI GTATCC 1 cut(s) 343
BglII AGATCT 1 cut(s) 245
BisI GCNGC 1 cut(s) 497
BlnI CCTAGG 1 cut(s) 925
BlsI GCNGC 1 cut(s) 498
Bme1390I CCNGG 2 cut(s) 44, 517
BmeT110I CYCGRG 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 500
BmrFI CCNGG 2 cut(s) 44, 517
BmsI GCATC 2 cut(s) 88, 860
BmtI GCTAGC 1 cut(s) 863
BplI GAGNNNNNCTC 2 cut(s) 525, 557
BpmI CTGGAG 1 cut(s) 1094
BpuEI CTTGAG 3 cut(s) 734, 866, 941
BpuMI CCSGG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 4 cut(s) 344, 515, 584, 925
BsaWI WCCGGW 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 1061, 1091
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 162, 585
Bse1I ACTGG 1 cut(s) 627
Bse21I CCTNAGG 1 cut(s) 551
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 1 cut(s) 517
BseDI CCNNGG 4 cut(s) 344, 515, 584, 925
BseGI GGATG 5 cut(s) 579, 836, 840, 851, 946
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 3 cut(s) 49, 162, 585
BseMII CTCAG 2 cut(s) 240, 565
BseNI ACTGG 1 cut(s) 627
BseYI CCCAGC 2 cut(s) 156, 1094
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 344
BshFI GGCC 1 cut(s) 455
BsiEI CGRYCG 1 cut(s) 344
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 2 cut(s) 43, 662
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 3 cut(s) 49, 162, 585
BsmAI GTCTC 2 cut(s) 891, 1052
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 1 cut(s) 455
BsoBI CYCGRG 1 cut(s) 605
Bsp1407I TGTACA 1 cut(s) 905
Bsp143I GATC 5 cut(s) 72, 245, 265, 490, 645
BspACI CCGC 5 cut(s) 11, 201, 496, 576, 610
BspANI GGCC 1 cut(s) 455
BspCNI CTCAG 2 cut(s) 241, 564
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 500
BspOI GCTAGC 1 cut(s) 863
BspPI GGATC 2 cut(s) 80, 653
BsrBI CCGCTC 2 cut(s) 11, 610
BsrGI TGTACA 1 cut(s) 905
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 4 cut(s) 344, 515, 584, 925
BssMI GATC 5 cut(s) 72, 245, 265, 490, 645
BssSI CACGAG 1 cut(s) 1035
BssT1I CCWWGG 2 cut(s) 584, 925
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 1 cut(s) 517
Bst4CI ACNGT 2 cut(s) 345, 1052
Bst6I CTCTTC 2 cut(s) 212, 281
BstAUI TGTACA 1 cut(s) 905
BstC8I GCNNGC 2 cut(s) 9, 861
BstDEI CTNAG 4 cut(s) 179, 249, 551, 818
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 5 cut(s) 579, 836, 840, 851, 946
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 5 cut(s) 75, 248, 268, 493, 648
BstMAI GTCTC 2 cut(s) 891, 1052
BstMBI GATC 5 cut(s) 72, 245, 265, 490, 645
BstMCI CGRYCG 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstNI CCWGG 1 cut(s) 517
BstSCI CCNGG 2 cut(s) 42, 515
BstUI CGCG 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
Bsu36I CCTNAGG 1 cut(s) 551
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 455
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 5 cut(s) 579, 836, 840, 851, 946
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 456, 634, 1114
Cac8I GCNNGC 2 cut(s) 9, 861
CseI GACGC 1 cut(s) 13
Csp6I GTAC 3 cut(s) 683, 752, 906
CviAII CATG 3 cut(s) 438, 856, 995
CviQI GTAC 3 cut(s) 683, 752, 906
DdeI CTNAG 4 cut(s) 179, 249, 551, 818
DpnI GATC 5 cut(s) 74, 247, 267, 492, 647
DpnII GATC 5 cut(s) 72, 245, 265, 490, 645
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 2 cut(s) 212, 281
EarI CTCTTC 2 cut(s) 212, 281
Eco130I CCWWGG 2 cut(s) 584, 925
Eco81I CCTNAGG 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 515
EcoT14I CCWWGG 2 cut(s) 584, 925
ErhI CCWWGG 2 cut(s) 584, 925
FaeI CATG 3 cut(s) 441, 859, 998
FalI AAGNNNNNCTT 2 cut(s) 968, 1000
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 437, 855, 994
FauI CCCGC 2 cut(s) 194, 583
FauNDI CATATG 1 cut(s) 168
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 5 cut(s) 566, 838, 843, 847, 953
Fsp4HI GCNGC 1 cut(s) 497
FspBI CTAG 7 cut(s) 95, 140, 323, 860, 890, 926, 962
GluI GCNGC 1 cut(s) 497
GsaI CCCAGC 2 cut(s) 160, 1098
GsuI CTGGAG 1 cut(s) 1094
HaeIII GGCC 1 cut(s) 455
HapII CCGG 2 cut(s) 43, 662
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 441, 859, 998
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HinfI GANTC 5 cut(s) 506, 716, 845, 930, 952
HpaII CCGG 2 cut(s) 43, 662
HphI GGTGA 4 cut(s) 217, 275, 289, 616
Hpy166II GTNNAC 3 cut(s) 754, 906, 1000
Hpy188I TCNGA 2 cut(s) 250, 645
Hpy188III TCNNGA 4 cut(s) 553, 570, 713, 890
Hpy8I GTNNAC 3 cut(s) 754, 906, 1000
HpyAV CCTTC 3 cut(s) 113, 205, 254
HpyCH4III ACNGT 2 cut(s) 345, 1052
HpyCH4V TGCA 5 cut(s) 65, 172, 617, 770, 801
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 4 cut(s) 179, 249, 551, 818
Hsp92II CATG 3 cut(s) 441, 859, 998
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 5 cut(s) 72, 245, 265, 490, 645
LmnI GCTCC 2 cut(s) 504, 1069
LweI GCATC 2 cut(s) 88, 860
MaeI CTAG 7 cut(s) 95, 140, 323, 860, 890, 926, 962
MaeIII GTNAC 5 cut(s) 79, 589, 721, 944, 1010
MalI GATC 5 cut(s) 74, 247, 267, 492, 647
MbiI CCGCTC 2 cut(s) 11, 610
MboI GATC 5 cut(s) 72, 245, 265, 490, 645
MboII GAAGA 8 cut(s) 34, 98, 229, 298, 344, 374, 748, 991
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 245
MluCI AATT 8 cut(s) 27, 119, 253, 443, 565, 739, 775, 796
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 1 cut(s) 1059
MroXI GAANNNNTTC 1 cut(s) 983
MseI TTAA 6 cut(s) 300, 312, 384, 563, 672, 1101
MslI CAYNNNNRTG 1 cut(s) 730
MspI CCGG 2 cut(s) 43, 662
MspR9I CCNGG 2 cut(s) 44, 517
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 617
MvaI CCWGG 1 cut(s) 517
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 493
NciI CCSGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 168
NdeII GATC 5 cut(s) 72, 245, 265, 490, 645
NheI GCTAGC 1 cut(s) 859
NlaIII CATG 3 cut(s) 441, 859, 998
NlaIV GGNNCC 1 cut(s) 500
NmuCI GTSAC 2 cut(s) 944, 1010
OliI CACNNNNGTG 1 cut(s) 730
PctI GAATGC 1 cut(s) 617
PdmI GAANNNNTTC 1 cut(s) 983
PfeI GAWTC 4 cut(s) 506, 845, 930, 952
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PsiI TTATAA 1 cut(s) 809
Psp6I CCWGG 1 cut(s) 515
PspFI CCCAGC 2 cut(s) 156, 1094
PspGI CCWGG 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 500
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 3 cut(s) 684, 753, 907
RsaNI GTAC 3 cut(s) 683, 752, 906
RseI CAYNNNNRTG 1 cut(s) 730
SaqAI TTAA 6 cut(s) 300, 312, 384, 563, 672, 1101
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 5 cut(s) 72, 245, 265, 490, 645
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 2 cut(s) 44, 517
SfaNI GCATC 2 cut(s) 88, 860
SmiMI CAYNNNNRTG 1 cut(s) 730
SmlI CTYRAG 3 cut(s) 713, 881, 956
SmoI CTYRAG 3 cut(s) 713, 881, 956
Sse9I AATT 8 cut(s) 27, 119, 253, 443, 565, 739, 775, 796
SsiI CCGC 5 cut(s) 11, 201, 496, 576, 610
SspI AATATT 1 cut(s) 298
SspMI CTAG 7 cut(s) 95, 140, 323, 860, 890, 926, 962
StyD4I CCNGG 2 cut(s) 42, 515
StyI CCWWGG 2 cut(s) 584, 925
TaaI ACNGT 2 cut(s) 345, 1052
TaqI TCGA 2 cut(s) 759, 914
TaqII GACCGA 1 cut(s) 998
TasI AATT 8 cut(s) 27, 119, 253, 443, 565, 739, 775, 796
TatI WGTACW 1 cut(s) 905
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 4 cut(s) 506, 845, 930, 952
Tru1I TTAA 6 cut(s) 300, 312, 384, 563, 672, 1101
Tru9I TTAA 6 cut(s) 300, 312, 384, 563, 672, 1101
TscAI CASTG 2 cut(s) 456, 634
TseFI GTSAC 2 cut(s) 944, 1010
Tsp45I GTSAC 2 cut(s) 944, 1010
TspDTI ATGAA 4 cut(s) 243, 426, 498, 610
TspRI CASTG 2 cut(s) 456, 634
Van91I CCANNNNNTGG 1 cut(s) 585
XapI RAATTY 3 cut(s) 119, 565, 739
XbaI TCTAGA 1 cut(s) 889
XcmI CCANNNNNNNNNTGG 1 cut(s) 402
XmaJI CCTAGG 1 cut(s) 925
XmnI GAANNNNTTC 1 cut(s) 983
XspI CTAG 7 cut(s) 95, 140, 323, 860, 890, 926, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.