Rmu_sc0003827.1_g000007

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003827.1
Physical Location & Seq
Reverse (-)
36946 .. 38897
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003827.1_g000007.1.cds

Sequence Viewer

Length: 1443 bp
atgttgaagttacgtacatcctcggtaccgaatcacacgcacctcctggcactgctagcggatatccttagcacttgggatctggaggccgccaccgccggaagcgttcgccggcatctggaggaagattttcgggttgatctatcgaacccagaacaccgttccatccaagaatatatcgatatcttttttgatgatgggaaagaggatgtgaatgaaagcaagggtacaaaaagaaatagaaagagaaagagaaagagaaaggtgccggagatatgtagggtgtctccacagcttcaggagcttgtaggaggaggatccgaaatgacgcgagcggaggctgtgaagaaaattgtggcttatagccgggaaaagggtttgctaacagaaaagaggatcatagtaacagatgataaactagatgcccttcttcccaaatgtaaatttatttttatattacgactagattacctcttgtcccagcataggcatatgcaatcgcttagagttgccaaaggtgatggcggggtgaggaaggggaagaggaacaatgaagcaaatggtaaaagatctgagaattgtgaaggtgatcaagttagagtgaaaaagaagaggaacaatattaaacgaaacattaacctcgcactagcagaggaagatgtgcgaccgtgggataatatgccagaagatattatggtaaaaatctttaagctattaccatttccatattggtcattctatccctgttatgtctgccgttcatggcaattgtcagtggccgatgtaatgtttccacctaataacaatgagcttgatctgcggctccttgattcatatccctggaaatcaagggaaagagttttactcctatacctcaggattgtcttaaattcccgacccgccatcccttgggcaacactttacttgcccgagaagactgaattcatcaccaatgaagtcctcacttggatcgctcaaaagacaccggaactacttaatctttctgtacctaaaaagttgaggggagatgtttttcttgagtcggttacaccgaagtggaagaatttgagaatggtacacatcgatatttctgcaaataatttttctcatctccaagctaattgcacatttttaagtgatcttagtttatatggatggatggacgatgattcagcatccatgctagctaaatcttttccaaatctcaagtctctagagatttatgggtgtacaatgtcgaaccgtaccctaggaatcataatggatggtcacaagaatctcaagctagttgctacacgaaagaagaacttctaccaccatgttgacctactcgggcacaagttggttgaggcatttacacgaggaaactactacctttttgagacttgtgtggagctggagttggagagaacatttgctgggtttaaccctatatatcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

55.7

Weight (kDa)

9.28

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 25
AccB1I GGYRCC 2 cut(s) 25, 265
AccB7I CCANNNNNTGG 1 cut(s) 909
AccBSI CCGCTC 1 cut(s) 335
AccII CGCG 1 cut(s) 331
AciI CCGC 7 cut(s) 59, 90, 96, 335, 525, 820, 900
AclWI GGATC 5 cut(s) 87, 312, 325, 404, 977
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 4 cut(s) 443, 889, 941, 1063
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 7 cut(s) 16, 27, 229, 1008, 1077, 1231, 1246
AfiI CCNNNNNNNGG 4 cut(s) 118, 373, 486, 909
AgsI TTSAA 1 cut(s) 7
AjnI CCWGG 2 cut(s) 45, 839
AleI CACNNNNGTG 1 cut(s) 1054
AluBI AGCT 8 cut(s) 295, 304, 712, 811, 1118, 1187, 1285, 1396
AluI AGCT 8 cut(s) 295, 304, 712, 811, 1118, 1187, 1285, 1396
Alw26I GTCTC 3 cut(s) 291, 1215, 1376
AlwI GGATC 5 cut(s) 87, 312, 325, 404, 977
Ama87I CYCGRG 2 cut(s) 929, 1331
AoxI GGCC 2 cut(s) 87, 777
ApoI RAATTY 4 cut(s) 443, 889, 941, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 1193, 1225
Asp700I GAANNNNTTC 2 cut(s) 129, 1307
Asp718I GGTACC 1 cut(s) 25
AspA2I CCTAGG 1 cut(s) 1249
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 4 cut(s) 530, 541, 599, 940
AsuNHI GCTAGC 2 cut(s) 55, 1183
AvaI CYCGRG 2 cut(s) 929, 1331
AvrII CCTAGG 1 cut(s) 1249
AxyI CCTNAGG 1 cut(s) 875
BaeGI GKGCMC 1 cut(s) 1338
BamHI GGATCC 1 cut(s) 317
BanI GGYRCC 2 cut(s) 25, 265
BarI GAAGNNNNNNTAC 2 cut(s) 1295, 1327
BauI CACGAG 1 cut(s) 1359
BbsI GAAGAC 1 cut(s) 941
BccI CCATC 7 cut(s) 173, 191, 515, 911, 1149, 1153, 1259
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 1073, 1107
BciT130I CCWGG 2 cut(s) 47, 841
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 3 cut(s) 291, 1215, 1376
BfaI CTAG 8 cut(s) 56, 419, 464, 647, 1184, 1214, 1250, 1286
BglII AGATCT 1 cut(s) 569
BisI GCNGC 2 cut(s) 90, 821
BlnI CCTAGG 1 cut(s) 1249
BlsI GCNGC 2 cut(s) 91, 822
Bme1390I CCNGG 3 cut(s) 47, 368, 841
BmeT110I CYCGRG 2 cut(s) 929, 1331
BmiI GGNNCC 4 cut(s) 27, 267, 319, 824
BmrFI CCNGG 3 cut(s) 47, 368, 841
BmsI GCATC 3 cut(s) 124, 412, 1184
BmtI GCTAGC 2 cut(s) 59, 1187
BpiI GAAGAC 1 cut(s) 941
BplI GAGNNNNNCTC 2 cut(s) 849, 881
BpmI CTGGAG 3 cut(s) 104, 140, 1418
Bpu10I CCTNAGC 1 cut(s) 68
BpuEI CTTGAG 3 cut(s) 1058, 1190, 1265
BpuMI CCSGG 1 cut(s) 368
Bsa29I ATCGAT 2 cut(s) 180, 1083
BsaAI YACGTR 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 834
BsaJI CCNNGG 5 cut(s) 21, 668, 839, 908, 1249
BsaWI WCCGGW 1 cut(s) 985
BsaXI ACNNNNNCTCC 2 cut(s) 1385, 1415
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 373, 486, 909
Bse118I RCCGGY 1 cut(s) 111
Bse21I CCTNAGG 1 cut(s) 875
Bse8I GATNNNNATC 1 cut(s) 834
BseBI CCWGG 2 cut(s) 47, 841
BseCI ATCGAT 2 cut(s) 180, 1083
BseDI CCNNGG 5 cut(s) 21, 668, 839, 908, 1249
BseGI GGATG 8 cut(s) 17, 165, 214, 903, 1160, 1164, 1175, 1270
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 4 cut(s) 118, 373, 486, 909
BseMII CTCAG 2 cut(s) 564, 889
BseRI GAGGAG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 1338
BseYI CCCAGC 2 cut(s) 480, 1418
Bsh1236I CGCG 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 668
BshFI GGCC 2 cut(s) 89, 779
BshNI GGYRCC 2 cut(s) 25, 265
BshVI ATCGAT 2 cut(s) 180, 1083
BsiEI CGRYCG 1 cut(s) 668
BsiHKCI CYCGRG 2 cut(s) 929, 1331
BsiSI CCGG 5 cut(s) 99, 112, 269, 367, 986
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 4 cut(s) 118, 373, 486, 909
BsmAI GTCTC 3 cut(s) 291, 1215, 1376
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 2 cut(s) 89, 779
BsoBI CYCGRG 2 cut(s) 929, 1331
Bsp1286I GDGCHC 1 cut(s) 1338
Bsp1407I TGTACA 1 cut(s) 1229
Bsp143I GATC 9 cut(s) 79, 139, 317, 396, 569, 589, 814, 969, 1138
BspACI CCGC 7 cut(s) 59, 90, 96, 335, 525, 820, 900
BspANI GGCC 2 cut(s) 89, 779
BspCNI CTCAG 2 cut(s) 565, 888
BspDI ATCGAT 2 cut(s) 180, 1083
BspFNI CGCG 1 cut(s) 331
BspLI GGNNCC 4 cut(s) 27, 267, 319, 824
BspOI GCTAGC 2 cut(s) 59, 1187
BspPI GGATC 5 cut(s) 87, 312, 325, 404, 977
BspT107I GGYRCC 2 cut(s) 25, 265
BsrBI CCGCTC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 111
BsrGI TGTACA 1 cut(s) 1229
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 5 cut(s) 21, 668, 839, 908, 1249
BssMI GATC 9 cut(s) 79, 139, 317, 396, 569, 589, 814, 969, 1138
BssSI CACGAG 1 cut(s) 1359
BssT1I CCWWGG 2 cut(s) 908, 1249
Bst2BI CACGAG 1 cut(s) 1359
Bst2UI CCWGG 2 cut(s) 47, 841
Bst4CI ACNGT 3 cut(s) 161, 669, 1244
Bst6I CTCTTC 2 cut(s) 536, 605
BstAUI TGTACA 1 cut(s) 1229
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 57, 113, 333, 1185
BstDEI CTNAG 5 cut(s) 68, 503, 573, 875, 1142
BstDSI CCRYGG 1 cut(s) 668
BstF5I GGATG 8 cut(s) 17, 165, 214, 903, 1160, 1164, 1175, 1270
BstFNI CGCG 1 cut(s) 331
BstKTI GATC 9 cut(s) 82, 142, 320, 399, 572, 592, 817, 972, 1141
BstMAI GTCTC 3 cut(s) 291, 1215, 1376
BstMBI GATC 9 cut(s) 79, 139, 317, 396, 569, 589, 814, 969, 1138
BstMCI CGRYCG 1 cut(s) 668
BstMWI GCNNNNNNNGC 4 cut(s) 56, 95, 301, 817
BstNI CCWGG 2 cut(s) 47, 841
BstSCI CCNGG 3 cut(s) 45, 366, 839
BstSLI GKGCMC 1 cut(s) 1338
BstSNI TACGTA 1 cut(s) 14
BstUI CGCG 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 941
BstX2I RGATCY 3 cut(s) 79, 317, 569
BstYI RGATCY 3 cut(s) 79, 317, 569
Bsu15I ATCGAT 2 cut(s) 180, 1083
Bsu36I CCTNAGG 1 cut(s) 875
BsuRI GGCC 2 cut(s) 89, 779
BsuTUI ATCGAT 2 cut(s) 180, 1083
BtgI CCRYGG 1 cut(s) 668
BtsCI GGATG 8 cut(s) 17, 165, 214, 903, 1160, 1164, 1175, 1270
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 3 cut(s) 50, 780, 1438
Cac8I GCNNGC 4 cut(s) 57, 113, 333, 1185
Cfr10I RCCGGY 1 cut(s) 111
ClaI ATCGAT 2 cut(s) 180, 1083
CseI GACGC 1 cut(s) 337
Csp6I GTAC 7 cut(s) 15, 26, 228, 1007, 1076, 1230, 1245
CviAII CATG 3 cut(s) 762, 1180, 1319
CviQI GTAC 7 cut(s) 15, 26, 228, 1007, 1076, 1230, 1245
DdeI CTNAG 5 cut(s) 68, 503, 573, 875, 1142
DpnI GATC 9 cut(s) 81, 141, 319, 398, 571, 591, 816, 971, 1140
DpnII GATC 9 cut(s) 79, 139, 317, 396, 569, 589, 814, 969, 1138
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 536, 605
EarI CTCTTC 2 cut(s) 536, 605
Eco105I TACGTA 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 908, 1249
Eco32I GATATC 2 cut(s) 64, 184
Eco57I CTGAAG 1 cut(s) 281
Eco81I CCTNAGG 1 cut(s) 875
Eco88I CYCGRG 2 cut(s) 929, 1331
EcoRI GAATTC 1 cut(s) 941
EcoRII CCWGG 2 cut(s) 45, 839
EcoRV GATATC 2 cut(s) 64, 184
EcoT14I CCWWGG 2 cut(s) 908, 1249
ErhI CCWWGG 2 cut(s) 908, 1249
FaeI CATG 3 cut(s) 765, 1183, 1322
FalI AAGNNNNNCTT 2 cut(s) 1292, 1324
FaqI GGGAC 1 cut(s) 463
FatI CATG 3 cut(s) 761, 1179, 1318
FauI CCCGC 2 cut(s) 518, 907
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 2 cut(s) 90, 821
FokI GGATG 8 cut(s) 4, 152, 221, 890, 1162, 1167, 1171, 1277
Fsp4HI GCNGC 2 cut(s) 90, 821
FspBI CTAG 8 cut(s) 56, 419, 464, 647, 1184, 1214, 1250, 1286
GluI GCNGC 2 cut(s) 90, 821
GsaI CCCAGC 2 cut(s) 484, 1422
GsuI CTGGAG 3 cut(s) 104, 140, 1418
HaeIII GGCC 2 cut(s) 89, 779
HapII CCGG 5 cut(s) 99, 112, 269, 367, 986
HgaI GACGC 1 cut(s) 337
Hin1II CATG 3 cut(s) 765, 1183, 1322
HincII GTYRAC 1 cut(s) 1324
HindII GTYRAC 1 cut(s) 1324
HinfI GANTC 6 cut(s) 31, 830, 1040, 1169, 1254, 1276
HpaII CCGG 5 cut(s) 99, 112, 269, 367, 986
HphI GGTGA 4 cut(s) 530, 541, 599, 940
Hpy166II GTNNAC 3 cut(s) 1078, 1230, 1324
Hpy188I TCNGA 2 cut(s) 322, 574
Hpy188III TCNNGA 7 cut(s) 83, 119, 299, 877, 894, 1037, 1214
Hpy8I GTNNAC 3 cut(s) 1078, 1230, 1324
HpyAV CCTTC 3 cut(s) 437, 529, 578
HpyCH4III ACNGT 3 cut(s) 161, 669, 1244
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 496, 1094, 1125
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 95, 301, 817
HpyF3I CTNAG 5 cut(s) 68, 503, 573, 875, 1142
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 3 cut(s) 765, 1183, 1322
KpnI GGTACC 1 cut(s) 29
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 9 cut(s) 79, 139, 317, 396, 569, 589, 814, 969, 1138
LmnI GCTCC 3 cut(s) 301, 828, 1393
LweI GCATC 3 cut(s) 124, 412, 1184
MaeI CTAG 8 cut(s) 56, 419, 464, 647, 1184, 1214, 1250, 1286
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 4 cut(s) 9, 403, 1045, 1268
MalI GATC 9 cut(s) 81, 141, 319, 398, 571, 591, 816, 971, 1140
MbiI CCGCTC 1 cut(s) 335
MboI GATC 9 cut(s) 79, 139, 317, 396, 569, 589, 814, 969, 1138
MfeI CAATTG 1 cut(s) 767
MflI RGATCY 3 cut(s) 79, 317, 569
MhlI GDGCHC 1 cut(s) 1338
MluCI AATT 9 cut(s) 351, 443, 577, 767, 889, 941, 1063, 1099, 1120
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 1 cut(s) 1383
MroNI GCCGGC 1 cut(s) 111
MroXI GAANNNNTTC 2 cut(s) 129, 1307
MseI TTAA 7 cut(s) 624, 636, 708, 887, 996, 1133, 1425
MslI CAYNNNNRTG 1 cut(s) 1054
MspI CCGG 5 cut(s) 99, 112, 269, 367, 986
MspR9I CCNGG 3 cut(s) 47, 368, 841
MunI CAATTG 1 cut(s) 767
MvaI CCWGG 2 cut(s) 47, 841
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 4 cut(s) 56, 95, 301, 817
NaeI GCCGGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 368
NdeI CATATG 1 cut(s) 492
NdeII GATC 9 cut(s) 79, 139, 317, 396, 569, 589, 814, 969, 1138
NgoMIV GCCGGC 1 cut(s) 111
NheI GCTAGC 2 cut(s) 55, 1183
NlaIII CATG 3 cut(s) 765, 1183, 1322
NlaIV GGNNCC 4 cut(s) 27, 267, 319, 824
NmuCI GTSAC 1 cut(s) 1268
OliI CACNNNNGTG 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 1049
PdiI GCCGGC 1 cut(s) 113
PdmI GAANNNNTTC 2 cut(s) 129, 1307
PfeI GAWTC 5 cut(s) 31, 830, 1169, 1254, 1276
PflMI CCANNNNNTGG 1 cut(s) 909
PkrI GCNGC 2 cut(s) 91, 822
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
Ppu21I YACGTR 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 45, 839
PspFI CCCAGC 2 cut(s) 480, 1418
PspGI CCWGG 2 cut(s) 45, 839
PspN4I GGNNCC 4 cut(s) 27, 267, 319, 824
PsuI RGATCY 3 cut(s) 79, 317, 569
RsaI GTAC 7 cut(s) 16, 27, 229, 1008, 1077, 1231, 1246
RsaNI GTAC 7 cut(s) 15, 26, 228, 1007, 1076, 1230, 1245
RseI CAYNNNNRTG 1 cut(s) 1054
SaqAI TTAA 7 cut(s) 624, 636, 708, 887, 996, 1133, 1425
SatI GCNGC 2 cut(s) 90, 821
Sau3AI GATC 9 cut(s) 79, 139, 317, 396, 569, 589, 814, 969, 1138
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 3 cut(s) 47, 368, 841
SduI GDGCHC 1 cut(s) 1338
SfaNI GCATC 3 cut(s) 124, 412, 1184
SmiMI CAYNNNNRTG 1 cut(s) 1054
SmlI CTYRAG 3 cut(s) 1037, 1205, 1280
SmoI CTYRAG 3 cut(s) 1037, 1205, 1280
SnaBI TACGTA 1 cut(s) 14
Sse9I AATT 9 cut(s) 351, 443, 577, 767, 889, 941, 1063, 1099, 1120
SsiI CCGC 7 cut(s) 59, 90, 96, 335, 525, 820, 900
SspI AATATT 1 cut(s) 622
SspMI CTAG 8 cut(s) 56, 419, 464, 647, 1184, 1214, 1250, 1286
StyD4I CCNGG 3 cut(s) 45, 366, 839
StyI CCWWGG 2 cut(s) 908, 1249
TaaI ACNGT 3 cut(s) 161, 669, 1244
TaiI ACGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 146, 180, 1083, 1238
TasI AATT 9 cut(s) 351, 443, 577, 767, 889, 941, 1063, 1099, 1120
TatI WGTACW 1 cut(s) 1229
TauI GCSGC 2 cut(s) 92, 823
TfiI GAWTC 5 cut(s) 31, 830, 1169, 1254, 1276
Tru1I TTAA 7 cut(s) 624, 636, 708, 887, 996, 1133, 1425
Tru9I TTAA 7 cut(s) 624, 636, 708, 887, 996, 1133, 1425
TscAI CASTG 2 cut(s) 57, 780
TseFI GTSAC 1 cut(s) 1268
Tsp45I GTSAC 1 cut(s) 1268
TspDTI ATGAA 6 cut(s) 231, 567, 750, 822, 934, 969
TspRI CASTG 2 cut(s) 57, 780
Van91I CCANNNNNTGG 1 cut(s) 909
XapI RAATTY 4 cut(s) 443, 889, 941, 1063
XbaI TCTAGA 1 cut(s) 1213
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
XmaJI CCTAGG 1 cut(s) 1249
XmnI GAANNNNTTC 2 cut(s) 129, 1307
XspI CTAG 8 cut(s) 56, 419, 464, 647, 1184, 1214, 1250, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.