Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008615.1

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Forward (+)

152 .. 4746

Gene Structure 4595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgatgatagtgagcaacatggataacgactacacgcggattgaaattagagaagatgaagggaatttgatagtagcaaataatgtggagggtcaaattatgagtgaaaatagaaatgatgaagatgaattattagcatcatcgattccagccataagtaggaatgagcaaacggggaattcccctgcccccgcgcccccgttccccgtctggggatattatcagatgggggattccccaccccgcccccgcggatcctcacggatcgcccttaggatcatcctcacaaaattatacaaagatccaacggttggatcgtccggatcgccttttagaatcatcctcacaaaattatacgacaatccaacggtcggatcctcccgaatcactttgaagtttcgtacatcctcggtaccgaatcacacgcacctcctggcactgctagcggatatccttagcacttgggatctggaggccgccaccgccggaagcgttcgccggcatctggaggaagattttcgggttgatctatcgaacccagaacaccgttccatccaagaatatatcgatatcttttttgatgatgggaaagaggatgtgaatgaaagcaagggtacaaaaagaaatagaaagagaaagagaaagagaaaggtgccggagatatgtagggtgtctccacagcttcaggagcttgtaggaggaggatccgaaatgacgcgagcggaggctgtgaagaaaattgtggcttatagccgggaaaagggtttgctaactgcagagaggatcatagtaacagatgataacctagatgcccttcttcccaaatgtaaatttatttttatattacgactagattacctcttgtcccagcattggcatatgcaatcgcttagaggtatgttgagtttcgtctacttgttcatgatcaatatactgtttacattagtacattacaccatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

320

Amino Acids

36.44

Weight (kDa)

7.78

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	2 cut(s)	412, 652
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	912
AccII	CGCG	4 cut(s)	37, 194, 252, 718
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	9 cut(s)	37, 192, 244, 250, 252, 446, 477, 483, 722
AcsI	RAATTY	3 cut(s)	64, 178, 830
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	4 cut(s)	403, 414, 616, 948
AfiI	CCNNNNNNNGG	8 cut(s)	159, 211, 212, 311, 371, 505, 760, 873
AgsI	TTSAA	2 cut(s)	44, 394
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	2 cut(s)	682, 691
AluI	AGCT	2 cut(s)	682, 691
Alw26I	GTCTC	1 cut(s)	678
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	1 cut(s)	474
ApoI	RAATTY	3 cut(s)	64, 178, 830
Asp700I	GAANNNNTTC	1 cut(s)	516
Asp718I	GGTACC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	755
AsuNHI	GCTAGC	1 cut(s)	442
AxyI	CCTNAGG	1 cut(s)	272
BamHI	GGATCC	3 cut(s)	254, 374, 704
BanI	GGYRCC	2 cut(s)	412, 652
BccI	CCATC	3 cut(s)	220, 560, 578
BciT130I	CCWGG	1 cut(s)	434
BclI	TGATCA	1 cut(s)	924
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	1 cut(s)	678
BfaI	CTAG	4 cut(s)	443, 806, 851, 961
BfmI	CTRYAG	1 cut(s)	774
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	434, 755
BmiI	GGNNCC	5 cut(s)	256, 376, 414, 654, 706
BmrFI	CCNGG	2 cut(s)	434, 755
BmsI	GCATC	3 cut(s)	146, 511, 799
BmtI	GCTAGC	1 cut(s)	446
BpmI	CTGGAG	2 cut(s)	491, 527
Bpu10I	CCTNAGC	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	755
Bsa29I	ATCGAT	2 cut(s)	143, 567
BsaJI	CCNNGG	2 cut(s)	250, 408
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	8 cut(s)	159, 211, 212, 311, 371, 505, 760, 873
Bse118I	RCCGGY	1 cut(s)	498
Bse21I	CCTNAGG	1 cut(s)	272
BseAI	TCCGGA	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	434
BseCI	ATCGAT	2 cut(s)	143, 567
BseDI	CCNNGG	2 cut(s)	250, 408
BseGI	GGATG	5 cut(s)	279, 339, 404, 552, 601
BseLI	CCNNNNNNNGG	8 cut(s)	159, 211, 212, 311, 371, 505, 760, 873
BseRI	GAGGAG	1 cut(s)	714
BseYI	CCCAGC	1 cut(s)	867
Bsh1236I	CGCG	4 cut(s)	37, 194, 252, 718
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	2 cut(s)	412, 652
BshVI	ATCGAT	2 cut(s)	143, 567
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	5 cut(s)	321, 486, 499, 656, 754
BslFI	GGGAC	1 cut(s)	850
BslI	CCNNNNNNNGG	8 cut(s)	159, 211, 212, 311, 371, 505, 760, 873
BsmAI	GTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	850
BsnI	GGCC	1 cut(s)	476
Bsp13I	TCCGGA	1 cut(s)	320
BspACI	CCGC	9 cut(s)	37, 192, 244, 250, 252, 446, 477, 483, 722
BspANI	GGCC	1 cut(s)	476
BspDI	ATCGAT	2 cut(s)	143, 567
BspEI	TCCGGA	1 cut(s)	320
BspFNI	CGCG	4 cut(s)	37, 194, 252, 718
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	5 cut(s)	256, 376, 414, 654, 706
BspMAI	CTGCAG	1 cut(s)	778
BspOI	GCTAGC	1 cut(s)	446
BspT107I	GGYRCC	2 cut(s)	412, 652
BsrBI	CCGCTC	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	2 cut(s)	250, 408
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	4 cut(s)	310, 370, 548, 936
BstC8I	GCNNGC	3 cut(s)	444, 500, 720
BstDEI	CTNAG	3 cut(s)	272, 455, 890
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	5 cut(s)	279, 339, 404, 552, 601
BstFNI	CGCG	4 cut(s)	37, 194, 252, 718
BstHHI	GCGC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	678
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 482, 688
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	432, 753
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	4 cut(s)	37, 194, 252, 718
BstX2I	RGATCY	5 cut(s)	254, 301, 374, 466, 704
BstYI	RGATCY	5 cut(s)	254, 301, 374, 466, 704
Bsu15I	ATCGAT	2 cut(s)	143, 567
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	476
BsuTUI	ATCGAT	2 cut(s)	143, 567
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	5 cut(s)	279, 339, 404, 552, 601
BtsI	GCAGTG	1 cut(s)	437
BtsIMutI	CAGTG	1 cut(s)	437
Cac8I	GCNNGC	3 cut(s)	444, 500, 720
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	498
Cfr42I	CCGCGG	1 cut(s)	253
ClaI	ATCGAT	2 cut(s)	143, 567
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	4 cut(s)	402, 413, 615, 947
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	2 cut(s)	19, 922
CviJI	RGCY	7 cut(s)	152, 476, 682, 691, 728, 746, 753
CviKI_1	RGCY	7 cut(s)	152, 476, 682, 691, 728, 746, 753
CviQI	GTAC	4 cut(s)	402, 413, 615, 947
DdeI	CTNAG	3 cut(s)	272, 455, 890
Eco32I	GATATC	2 cut(s)	451, 571
Eco57I	CTGAAG	1 cut(s)	668
Eco81I	CCTNAGG	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	432
EcoRV	GATATC	2 cut(s)	451, 571
FaeI	CATG	2 cut(s)	22, 925
FaqI	GGGAC	1 cut(s)	850
FatI	CATG	2 cut(s)	18, 921
FauI	CCCGC	3 cut(s)	199, 251, 257
FauNDI	CATATG	1 cut(s)	879
FbaI	TGATCA	1 cut(s)	924
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	5 cut(s)	266, 326, 391, 539, 608
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	4 cut(s)	443, 806, 851, 961
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	477
GsaI	CCCAGC	1 cut(s)	871
GsuI	CTGGAG	2 cut(s)	491, 527
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	5 cut(s)	321, 486, 499, 656, 754
HgaI	GACGC	1 cut(s)	724
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	22, 925
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	5 cut(s)	145, 233, 336, 384, 418
HpaII	CCGG	5 cut(s)	321, 486, 499, 656, 754
Hpy166II	GTNNAC	2 cut(s)	913, 939
Hpy188I	TCNGA	3 cut(s)	225, 374, 709
Hpy188III	TCNNGA	6 cut(s)	321, 381, 470, 506, 686, 922
Hpy8I	GTNNAC	2 cut(s)	913, 939
HpyAV	CCTTC	2 cut(s)	53, 824
HpyCH4III	ACNGT	4 cut(s)	310, 370, 548, 936
HpyCH4V	TGCA	2 cut(s)	776, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 482, 688
HpyF3I	CTNAG	3 cut(s)	272, 455, 890
Hsp92II	CATG	2 cut(s)	22, 925
HspAI	GCGC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	320
KpnI	GGTACC	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	498
KroNI	GCCGGC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	924
KspI	CCGCGG	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	688
LweI	GCATC	3 cut(s)	146, 511, 799
MaeI	CTAG	4 cut(s)	443, 806, 851, 961
MaeIII	GTNAC	1 cut(s)	790
MbiI	CCGCTC	1 cut(s)	722
MboII	GAAGA	5 cut(s)	65, 134, 524, 745, 809
MflI	RGATCY	5 cut(s)	254, 301, 374, 466, 704
MluCI	AATT	9 cut(s)	45, 64, 96, 128, 178, 290, 350, 738, 830
MmeI	TCCRAC	4 cut(s)	292, 329, 352, 389
MroI	TCCGGA	1 cut(s)	320
MroNI	GCCGGC	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	5 cut(s)	321, 486, 499, 656, 754
MspR9I	CCNGG	2 cut(s)	434, 755
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	4 cut(s)	37, 194, 252, 718
MwoI	GCNNNNNNNGC	3 cut(s)	443, 482, 688
NaeI	GCCGGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	755
NdeI	CATATG	1 cut(s)	879
NgoMIV	GCCGGC	1 cut(s)	498
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	22, 925
NlaIV	GGNNCC	5 cut(s)	256, 376, 414, 654, 706
PagI	TCATGA	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PdiI	GCCGGC	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	5 cut(s)	145, 233, 336, 384, 418
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	867
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	5 cut(s)	256, 376, 414, 654, 706
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	5 cut(s)	254, 301, 374, 466, 704
RsaI	GTAC	4 cut(s)	403, 414, 616, 948
RsaNI	GTAC	4 cut(s)	402, 413, 615, 947
SacII	CCGCGG	1 cut(s)	253
SatI	GCNGC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	434, 755
SetI	ASST	7 cut(s)	432, 654, 684, 693, 807, 861, 898
SfaNI	GCATC	3 cut(s)	146, 511, 799
SfcI	CTRYAG	1 cut(s)	774
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
Sse9I	AATT	9 cut(s)	45, 64, 96, 128, 178, 290, 350, 738, 830
SsiI	CCGC	9 cut(s)	37, 192, 244, 250, 252, 446, 477, 483, 722
SspMI	CTAG	4 cut(s)	443, 806, 851, 961
StyD4I	CCNGG	2 cut(s)	432, 753
TaaI	ACNGT	4 cut(s)	310, 370, 548, 936
TaqI	TCGA	3 cut(s)	143, 533, 567
TasI	AATT	9 cut(s)	45, 64, 96, 128, 178, 290, 350, 738, 830
TatI	WGTACW	1 cut(s)	946
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	5 cut(s)	145, 233, 336, 384, 418
TscAI	CASTG	1 cut(s)	444
TspDTI	ATGAA	5 cut(s)	72, 135, 141, 618, 910
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	444
Van91I	CCANNNNNTGG	1 cut(s)	311
XapI	RAATTY	3 cut(s)	64, 178, 830
XmiI	GTMKAC	1 cut(s)	912
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	4 cut(s)	443, 806, 851, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.