Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2614051 .. 2615498

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGATCGAATGGCGTGCAACTCAGTCATGGCCTGCAACTCACAGGTATTCTTAGCACATGGGATCTTGAGACTGCCACCGCCGCAAGTGTCCGGCGGCATCTGGAGGAAGATTTTCGGGTCCATCTTTCGAATACCATCCAAGAACAAATCGACATCTTCTTTGATGATGAGAATGAAGGCAAAGGTAGAAGAACAAGACCGGTGATATGTACGTTGTCTCCAAAGCTTCAAGACTTTGTTGGAGGGGGACCCGAAATGGCCCGTGCGGAGGCAATGAAGAAAATTGTGGCTTATATCCGGAAAAAGGGTTTGCAGATGAATTGTAACCATCTCATATTTGCAGATGATAAACTAAAGTCCCTTTTTCCTGGCTGTACTAGATCTATCAGTATGTTTGAAATACATGACCTCCTATCCAAGGGTTTGCAGATGAATTGTAACCATCTCATATTTGCAGATGATAAACTAAAGTCCCTTTTTCCTGGCTGTACTAAATCTATCTGTATGTTTCAAATACATGACCTCCTATCCAAGCATGGTCATCTACAACCGCTTAAAGCTGGCAAAGATGAGAGTGGGGTGACGAAGACGAACGATGAAGCAATATGTAAAAAATCTGAGAATTGTGAAGGTGATCAAGATAGGGTGAAGAAGAAGGGGAAGAATGTTACAGGGGAAGCTGTGAGACCGTGGGATAAAATGCCACAAGCTATTATGGTGAAAATCTTAAAGCTATTACCATTTCCGGATTGGTCATTCCACCCCTGCTATGTTTGCAGTTCATGGCAAGTGGCAGTCGCCGGTGTAATGTTTCCACCTGAAAACCGTGAGCTTAATCTGCTGGTCCTTGATTCATATCCCTGGTTATTCAGGCAAAGGTGGTTCTTTAAATTCCTCAGGATTGCCTTAAATTCTCCATCCGCCATCTGTTGGAGAACGCTTTACTTGCCCCAGACTGCATTCATCAAAAATGATATCCTTAGTGAGATTGCTGAAAAGACACCGGAACTGCGTGAACTTTATGTACCTCAAAAGTTGTGGGAAGATGTTCTTCTTAAGTCGGTTGCACCTAAGTGGAAGAATTTGACAAGAGATAATATATGGTTCGGCTACCACCAAGTTTTCTTATCGCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

381

Amino Acids

43.48

Weight (kDa)

8.75

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	15 - 54	5.3e-06	DEK C terminal domain
SWIB	PF02201	71 - 141	2.2e-16	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	933
AccIII	TCCGGA	2 cut(s)	300, 748
AciI	CCGC	6 cut(s)	81, 84, 97, 269, 554, 924
AclWI	GGATC	2 cut(s)	13, 72
AcsI	RAATTY	3 cut(s)	893, 913, 1084
AfaI	GTAC	4 cut(s)	214, 379, 493, 1029
AfiI	CCNNNNNNNGG	4 cut(s)	271, 307, 421, 933
AflII	CTTAAG	1 cut(s)	1058
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	233, 401, 515
AjnI	CCWGG	3 cut(s)	370, 484, 863
AleI	CACNNNNGTG	1 cut(s)	1075
AluBI	AGCT	7 cut(s)	229, 563, 683, 713, 736, 835, 1140
AluI	AGCT	7 cut(s)	229, 563, 683, 713, 736, 835, 1140
Alw26I	GTCTC	3 cut(s)	65, 225, 682
AlwI	GGATC	2 cut(s)	13, 72
Aor13HI	TCCGGA	2 cut(s)	300, 748
AoxI	GGCC	2 cut(s)	31, 261
ApoI	RAATTY	3 cut(s)	893, 913, 1084
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AsiGI	ACCGGT	1 cut(s)	202
Asp700I	GAANNNNTTC	2 cut(s)	114, 1050
AspS9I	GGNCC	4 cut(s)	121, 251, 262, 847
AsuHPI	GGTGA	5 cut(s)	217, 595, 647, 661, 733
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	3 cut(s)	121, 251, 847
AxyI	CCTNAGG	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	596
BccI	CCATC	6 cut(s)	132, 146, 339, 453, 928, 935
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	3 cut(s)	372, 486, 865
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	3 cut(s)	65, 225, 682
BfaI	CTAG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	1058
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	2 cut(s)	84, 98
BlsI	GCNGC	2 cut(s)	85, 99
Bme1390I	CCNGG	3 cut(s)	372, 486, 865
Bme18I	GGWCC	3 cut(s)	121, 251, 847
BmgT120I	GGNCC	4 cut(s)	121, 251, 262, 847
BmiI	GGNNCC	3 cut(s)	122, 252, 253
BmrFI	CCNGG	3 cut(s)	372, 486, 865
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	858
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	3 cut(s)	420, 692, 863
BsaWI	WCCGGW	4 cut(s)	202, 300, 748, 1006
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 396, 426, 510, 540
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 307, 421, 933
Bse118I	RCCGGY	2 cut(s)	202, 803
Bse21I	CCTNAGG	1 cut(s)	899
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	858
BseAI	TCCGGA	2 cut(s)	300, 748
BseBI	CCWGG	3 cut(s)	372, 486, 865
BseDI	CCNNGG	3 cut(s)	420, 692, 863
BseGI	GGATG	2 cut(s)	138, 920
BseJI	GATNNNNATC	1 cut(s)	858
BseLI	CCNNNNNNNGG	4 cut(s)	271, 307, 421, 933
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	37, 612, 913
BshFI	GGCC	2 cut(s)	33, 263
BshTI	ACCGGT	1 cut(s)	202
BsiSI	CCGG	6 cut(s)	94, 203, 301, 749, 804, 1007
BslFI	GGGAC	3 cut(s)	264, 346, 460
BslI	CCNNNNNNNGG	4 cut(s)	271, 307, 421, 933
BsmAI	GTCTC	3 cut(s)	65, 225, 682
BsmFI	GGGAC	3 cut(s)	264, 346, 460
BsmI	GAATGC	1 cut(s)	962
BsnI	GGCC	2 cut(s)	33, 263
Bso31I	GGTCTC	1 cut(s)	682
Bsp119I	TTCGAA	1 cut(s)	131
Bsp13I	TCCGGA	2 cut(s)	300, 748
Bsp143I	GATC	4 cut(s)	5, 64, 383, 637
BspACI	CCGC	6 cut(s)	81, 84, 97, 269, 554, 924
BspANI	GGCC	2 cut(s)	33, 263
BspCNI	CTCAG	3 cut(s)	36, 613, 912
BspEI	TCCGGA	2 cut(s)	300, 748
BspLI	GGNNCC	3 cut(s)	122, 252, 253
BspPI	GGATC	2 cut(s)	13, 72
BspT104I	TTCGAA	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	1058
BspTNI	GGTCTC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	2 cut(s)	202, 803
BssAI	RCCGGY	2 cut(s)	202, 803
BssECI	CCNNGG	3 cut(s)	420, 692, 863
BssMI	GATC	4 cut(s)	5, 64, 383, 637
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	3 cut(s)	372, 486, 865
Bst4CI	ACNGT	2 cut(s)	693, 830
BstAFI	CTTAAG	1 cut(s)	1058
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	17, 35, 565
BstDEI	CTNAG	6 cut(s)	23, 53, 621, 899, 983, 1074
BstDSI	CCRYGG	1 cut(s)	692
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	138, 920
BstKTI	GATC	4 cut(s)	8, 67, 386, 640
BstMAI	GTCTC	3 cut(s)	65, 225, 682
BstMBI	GATC	4 cut(s)	5, 64, 383, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 777, 841, 949
BstNI	CCWGG	3 cut(s)	372, 486, 865
BstSCI	CCNGG	3 cut(s)	370, 484, 863
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	2 cut(s)	64, 383
BstYI	RGATCY	2 cut(s)	64, 383
Bsu36I	CCTNAGG	1 cut(s)	899
BsuRI	GGCC	2 cut(s)	33, 263
BtgI	CCRYGG	1 cut(s)	692
BtsCI	GGATG	2 cut(s)	138, 920
Cac8I	GCNNGC	3 cut(s)	17, 35, 565
Cfr10I	RCCGGY	2 cut(s)	202, 803
Cfr13I	GGNCC	4 cut(s)	121, 251, 262, 847
Csp6I	GTAC	4 cut(s)	213, 378, 492, 1028
CspAI	ACCGGT	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	1022, 1057
CviAII	CATG	6 cut(s)	29, 60, 407, 521, 539, 786
CviQI	GTAC	4 cut(s)	213, 378, 492, 1028
DdeI	CTNAG	6 cut(s)	23, 53, 621, 899, 983, 1074
DpnI	GATC	4 cut(s)	7, 66, 385, 639
DpnII	GATC	4 cut(s)	5, 64, 383, 637
DraI	TTTAAA	1 cut(s)	892
EciI	GGCGGA	1 cut(s)	913
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	682
Eco32I	GATATC	1 cut(s)	979
Eco47I	GGWCC	3 cut(s)	121, 251, 847
Eco81I	CCTNAGG	1 cut(s)	899
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	370, 484, 863
EcoRV	GATATC	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	6 cut(s)	32, 63, 410, 524, 542, 789
FalI	AAGNNNNNCTT	2 cut(s)	1038, 1070
FaqI	GGGAC	3 cut(s)	264, 346, 460
FatI	CATG	6 cut(s)	28, 59, 406, 520, 538, 785
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	84, 98
FokI	GGATG	2 cut(s)	125, 907
Fsp4HI	GCNGC	2 cut(s)	84, 98
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	2 cut(s)	84, 98
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	33, 263
HapII	CCGG	6 cut(s)	94, 203, 301, 749, 804, 1007
Hin1II	CATG	6 cut(s)	32, 63, 410, 524, 542, 789
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	854
HpaII	CCGG	6 cut(s)	94, 203, 301, 749, 804, 1007
HphI	GGTGA	5 cut(s)	217, 595, 647, 661, 733
Hpy166II	GTNNAC	1 cut(s)	1019
Hpy188I	TCNGA	1 cut(s)	622
Hpy188III	TCNNGA	7 cut(s)	68, 104, 233, 301, 641, 749, 901
Hpy8I	GTNNAC	1 cut(s)	1019
HpyAV	CCTTC	3 cut(s)	173, 626, 652
HpyCH4III	ACNGT	2 cut(s)	693, 830
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	9 cut(s)	19, 37, 316, 344, 430, 458, 780, 962, 1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 777, 841, 949
HpyF3I	CTNAG	6 cut(s)	23, 53, 621, 899, 983, 1074
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	6 cut(s)	32, 63, 410, 524, 542, 789
KflI	GGGWCCC	1 cut(s)	251
Kpn2I	TCCGGA	2 cut(s)	300, 748
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	4 cut(s)	5, 64, 383, 637
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	4 cut(s)	326, 440, 583, 670
MalI	GATC	4 cut(s)	7, 66, 385, 639
MboI	GATC	4 cut(s)	5, 64, 383, 637
MflI	RGATCY	2 cut(s)	64, 383
MluCI	AATT	7 cut(s)	285, 322, 436, 625, 893, 913, 1084
MmeI	TCCRAC	2 cut(s)	223, 914
MnlI	CCTC	7 cut(s)	100, 239, 265, 422, 536, 908, 1041
MroI	TCCGGA	2 cut(s)	300, 748
MroXI	GAANNNNTTC	2 cut(s)	114, 1050
MseI	TTAA	6 cut(s)	558, 731, 837, 891, 911, 1059
MslI	CAYNNNNRTG	1 cut(s)	1075
MspCI	CTTAAG	1 cut(s)	1058
MspI	CCGG	6 cut(s)	94, 203, 301, 749, 804, 1007
MspR9I	CCNGG	3 cut(s)	372, 486, 865
Mva1269I	GAATGC	1 cut(s)	962
MvaI	CCWGG	3 cut(s)	372, 486, 865
MwoI	GCNNNNNNNGC	4 cut(s)	83, 777, 841, 949
NdeII	GATC	4 cut(s)	5, 64, 383, 637
NlaIII	CATG	6 cut(s)	32, 63, 410, 524, 542, 789
NlaIV	GGNNCC	3 cut(s)	122, 252, 253
NmuCI	GTSAC	1 cut(s)	583
NspV	TTCGAA	1 cut(s)	131
OliI	CACNNNNGTG	1 cut(s)	1075
PctI	GAATGC	1 cut(s)	962
PdmI	GAANNNNTTC	2 cut(s)	114, 1050
PfeI	GAWTC	1 cut(s)	854
PflMI	CCANNNNNTGG	1 cut(s)	933
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	85, 99
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	3 cut(s)	370, 484, 863
PspGI	CCWGG	3 cut(s)	370, 484, 863
PspN4I	GGNNCC	3 cut(s)	122, 252, 253
PspPI	GGNCC	4 cut(s)	121, 251, 262, 847
PspPPI	RGGWCCY	1 cut(s)	251
PsrI	GAACNNNNNNTAC	2 cut(s)	1011, 1043
PsuI	RGATCY	2 cut(s)	64, 383
RsaI	GTAC	4 cut(s)	214, 379, 493, 1029
RsaNI	GTAC	4 cut(s)	213, 378, 492, 1028
RseI	CAYNNNNRTG	1 cut(s)	1075
SaqAI	TTAA	6 cut(s)	558, 731, 837, 891, 911, 1059
SatI	GCNGC	2 cut(s)	84, 98
Sau3AI	GATC	4 cut(s)	5, 64, 383, 637
Sau96I	GGNCC	4 cut(s)	121, 251, 262, 847
ScrFI	CCNGG	3 cut(s)	372, 486, 865
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	131
SgrAI	CRCCGGYG	1 cut(s)	803
SinI	GGWCC	3 cut(s)	121, 251, 847
SmiMI	CAYNNNNRTG	1 cut(s)	1075
SmlI	CTYRAG	2 cut(s)	68, 1058
SmoI	CTYRAG	2 cut(s)	68, 1058
Sse9I	AATT	7 cut(s)	285, 322, 436, 625, 893, 913, 1084
SsiI	CCGC	6 cut(s)	81, 84, 97, 269, 554, 924
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	3 cut(s)	370, 484, 863
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	693, 830
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	8, 131, 153
TasI	AATT	7 cut(s)	285, 322, 436, 625, 893, 913, 1084
TatI	WGTACW	2 cut(s)	377, 491
TauI	GCSGC	2 cut(s)	86, 100
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	6 cut(s)	558, 731, 837, 891, 911, 1059
Tru9I	TTAA	6 cut(s)	558, 731, 837, 891, 911, 1059
TseFI	GTSAC	1 cut(s)	583
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	8 cut(s)	192, 293, 335, 449, 615, 774, 846, 955
Van91I	CCANNNNNTGG	1 cut(s)	933
Vha464I	CTTAAG	1 cut(s)	1058
VpaK11BI	GGWCC	3 cut(s)	121, 251, 847
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	3 cut(s)	893, 913, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	750
XmnI	GAANNNNTTC	2 cut(s)	114, 1050
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.