Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Forward (+)

56942295 .. 56945402

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0405000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTCGTCGTTGTGTTCGTTAGGGCTTGCGCCGCAGTGGAGTCATAAGAGCTCGAGCTTCTTGTTCTTATTCAAATTCAAGAGAAGGACTTTAACCTTCGTCCCCAGAGTCACTTCTTCTTCTTCTTCTTCTTCTTCAAACGGCGACGACTCTGTTTCGGCGTCAAAGCCAAAGCAGTTGGGCTATGATCTTTCTGAGGACCTATTCGGGCTTGAGGGTAATCTGAAGCCAAGGAATGCTAGTTTGGGTGCGCGAAAACCAAGCTCTTGGTTCGGTCCAAATGGTCAGTATATCAGAGAGCTACCATGCCCAAGTTGCCGAGGGAGGGGATATACTCCTTGTACTGAGTGTGGTATAGAAAGGTCCAGATCAGACTGTTCACAGTGCCTTGGCAAGGGCATAATGACTTGTCGTCAGTGCATGGGAGATTGTGTCATATGGGAAGAGTCGATTGATGAACGGCCATGGGAAAAAGCTCGCTCAATTTCTCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAATTTGGAAATAAAACTGGATGTTAAGAGAAAGTCAAAGCGAGTATACCAGTCACCACCTCCTGAAGTTGGACTGAAGATTAGCCGCTCTCTGAAAAGTCTGAATGCCAAAACTGGTCTATTTAGTAAGAGAATGAAGATTATCCACCGTGATCCTAGGCTTCATGCTCAAAGAGTGGCAGCAATTAAGAAAGCCAAGGGAACTGCCGCAGCTAGAAAGCATACCTCTGAAACTTTAAAAGCTTTCTTTAGTGACCCAGAAAACCGTCGCAGAAGGAGCATTTCCATGCAGGGCATAAAATTTTACTGCAGAAACTGTGGGCGGGAGGGGCATAGGAGACACTACTGTCCAGAACTGAAGGCTAGTTTGATGAATAGGCAGTTCATCTGTGGCGTGTGTGGAGAAAAGGGTCATAACAGAAGAACCTGTCCAACGTTGAGCCGTCCCAAAAGCACTGTTAGAAGACCTCACCATTGCAGAATATGTGATCAAAGAGGCCACAATCGAACGACATGCCCCAAAGTGATTGGACCAAAGTTTATTGATGTAAAGAACGGGTTTCACAGTTCTGTAAGCCGAAGAACATACAAGTGCAAGTTGTGCAAAGAGAATGGGCATAATAGTAGGACATGTCCTACTCATAACAGAAATGTACATCCCTCAAAGATTGGTCATCAATCTGAGGAAGGAAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

406

Amino Acids

45.9

Weight (kDa)

9.97

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	867
AccBSI	CCGCTC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	567
AccII	CGCG	1 cut(s)	253
AciI	CCGC	4 cut(s)	32, 607, 729, 844
AclI	AACGTT	1 cut(s)	956
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	1 cut(s)	461
AcsI	RAATTY	2 cut(s)	74, 821
AcuI	CTGAAG	4 cut(s)	245, 606, 617, 899
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	2 cut(s)	343, 1176
AfiI	CCNNNNNNNGG	3 cut(s)	325, 394, 590
AflIII	ACRYGT	1 cut(s)	1151
AgsI	TTSAA	3 cut(s)	73, 79, 138
AhdI	GACNNNNNGTC	1 cut(s)	411
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	7 cut(s)	51, 57, 264, 301, 476, 734, 764
AluI	AGCT	7 cut(s)	51, 57, 264, 301, 476, 734, 764
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	1 cut(s)	668
AlwNI	CAGNNNCTG	1 cut(s)	837
Ama87I	CYCGRG	1 cut(s)	52
AoxI	GGCC	2 cut(s)	461, 1018
ApeKI	GCWGC	2 cut(s)	701, 731
ApoI	RAATTY	2 cut(s)	74, 821
AspA2I	CCTAGG	1 cut(s)	677
AspLEI	GCGC	2 cut(s)	31, 253
AspS9I	GGNCC	4 cut(s)	199, 275, 363, 1052
AsuHPI	GGTGA	2 cut(s)	567, 983
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	4 cut(s)	199, 275, 363, 1052
AvrII	CCTAGG	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	991
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	713, 743
BceAI	ACGGC	3 cut(s)	157, 476, 948
BcgI	CGANNNNNNTGC	2 cut(s)	1017, 1051
BclI	TGATCA	1 cut(s)	1009
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	4 cut(s)	240, 678, 735, 885
BfmI	CTRYAG	1 cut(s)	829
BisI	GCNGC	5 cut(s)	32, 607, 702, 729, 732
BlnI	CCTAGG	1 cut(s)	677
BlsI	GCNGC	5 cut(s)	33, 608, 703, 730, 733
Bme18I	GGWCC	4 cut(s)	199, 275, 363, 1052
BmeRI	GACNNNNNGTC	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	4 cut(s)	199, 275, 363, 1052
BpiI	GAAGAC	1 cut(s)	991
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	6 cut(s)	230, 319, 388, 464, 677, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 394, 590
Bse1I	ACTGG	3 cut(s)	543, 571, 640
Bse3DI	GCAATG	1 cut(s)	994
BseDI	CCNNGG	6 cut(s)	230, 319, 388, 464, 677, 717
BseGI	GGATG	2 cut(s)	547, 1177
BseLI	CCNNNNNNNGG	3 cut(s)	325, 394, 590
BseMI	GCAATG	1 cut(s)	994
BseMII	CTCAG	3 cut(s)	186, 336, 1194
BseNI	ACTGG	3 cut(s)	543, 571, 640
BseXI	GCAGC	2 cut(s)	713, 743
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	463, 1020
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	52
BslFI	GGGAC	2 cut(s)	86, 951
BslI	CCNNNNNNNGG	3 cut(s)	325, 394, 590
BsmAI	GTCTC	1 cut(s)	853
BsmFI	GGGAC	2 cut(s)	86, 951
BsmI	GAATGC	2 cut(s)	241, 631
BsnI	GGCC	2 cut(s)	463, 1020
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	1174
Bsp143I	GATC	4 cut(s)	187, 368, 673, 1009
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	4 cut(s)	32, 607, 729, 844
BspANI	GGCC	2 cut(s)	463, 1020
BspCNI	CTCAG	3 cut(s)	187, 337, 1195
BspFNI	CGCG	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	833
BspPI	GGATC	1 cut(s)	668
BsrBI	CCGCTC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	994
BsrGI	TGTACA	1 cut(s)	1174
BsrI	ACTGG	3 cut(s)	543, 571, 640
BssECI	CCNNGG	6 cut(s)	230, 319, 388, 464, 677, 717
BssMI	GATC	4 cut(s)	187, 368, 673, 1009
BssNAI	GTATAC	1 cut(s)	568
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	5 cut(s)	230, 388, 464, 677, 717
Bst1107I	GTATAC	1 cut(s)	568
Bst4CI	ACNGT	8 cut(s)	377, 384, 671, 788, 839, 869, 979, 1088
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	1122
BstAUI	TGTACA	1 cut(s)	1174
BstC8I	GCNNGC	2 cut(s)	27, 478
BstDEI	CTNAG	3 cut(s)	195, 345, 1203
BstDSI	CCRYGG	1 cut(s)	464
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	547, 1177
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	31, 253
BstKTI	GATC	4 cut(s)	190, 371, 676, 1012
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	4 cut(s)	187, 368, 673, 1009
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 315, 798, 850, 1122
BstNSI	RCATGY	2 cut(s)	1038, 1155
BstSFI	CTRYAG	1 cut(s)	829
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	713, 743
BstV2I	GAAGAC	1 cut(s)	991
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstZ17I	GTATAC	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	463, 1020
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	547, 1177
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	4 cut(s)	41, 389, 422, 975
Cac8I	GCNNGC	2 cut(s)	27, 478
CaiI	CAGNNNCTG	1 cut(s)	837
CfoI	GCGC	2 cut(s)	31, 253
Cfr13I	GGNCC	4 cut(s)	199, 275, 363, 1052
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	342, 1175
CviAII	CATG	7 cut(s)	306, 421, 465, 686, 808, 1035, 1152
CviQI	GTAC	2 cut(s)	342, 1175
DdeI	CTNAG	3 cut(s)	195, 345, 1203
DpnI	GATC	4 cut(s)	189, 370, 675, 1011
DpnII	GATC	4 cut(s)	187, 368, 673, 1009
DraI	TTTAAA	1 cut(s)	759
DrdI	GACNNNNNNGTC	1 cut(s)	867
DriI	GACNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	867
EaeI	YGGCCR	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	438
Eam1105I	GACNNNNNGTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	5 cut(s)	230, 388, 464, 677, 717
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	4 cut(s)	199, 275, 363, 1052
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	4 cut(s)	245, 606, 617, 899
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	199
EcoT14I	CCWWGG	5 cut(s)	230, 388, 464, 677, 717
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	5 cut(s)	230, 388, 464, 677, 717
FaeI	CATG	7 cut(s)	309, 424, 468, 689, 811, 1038, 1155
FaqI	GGGAC	2 cut(s)	86, 951
FatI	CATG	7 cut(s)	305, 420, 464, 685, 807, 1034, 1151
FauI	CCCGC	1 cut(s)	837
FauNDI	CATATG	1 cut(s)	437
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	5 cut(s)	32, 607, 702, 729, 732
FokI	GGATG	2 cut(s)	554, 1164
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	32, 607, 702, 729, 732
FspBI	CTAG	4 cut(s)	240, 678, 735, 885
GlaI	GCGC	2 cut(s)	30, 252
GluI	GCNGC	5 cut(s)	32, 607, 702, 729, 732
HaeIII	GGCC	2 cut(s)	463, 1020
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	2 cut(s)	31, 253
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	7 cut(s)	309, 424, 468, 689, 811, 1038, 1155
Hin6I	GCGC	2 cut(s)	29, 251
HinP1I	GCGC	2 cut(s)	29, 251
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	762
HinfI	GANTC	4 cut(s)	40, 108, 149, 446
HphI	GGTGA	2 cut(s)	567, 983
Hpy166II	GTNNAC	3 cut(s)	380, 520, 568
Hpy188I	TCNGA	8 cut(s)	196, 225, 296, 373, 615, 624, 751, 1204
Hpy188III	TCNNGA	4 cut(s)	79, 366, 584, 872
Hpy8I	GTNNAC	3 cut(s)	380, 520, 568
Hpy99I	CGWCG	3 cut(s)	10, 149, 792
HpyAV	CCTTC	6 cut(s)	78, 106, 496, 789, 874, 1202
HpyCH4III	ACNGT	8 cut(s)	377, 384, 671, 788, 839, 869, 979, 1088
HpyCH4IV	ACGT	1 cut(s)	956
HpyCH4V	TGCA	6 cut(s)	420, 811, 831, 999, 1116, 1125
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 315, 798, 850, 1122
HpyF3I	CTNAG	3 cut(s)	195, 345, 1203
HpySE526I	ACGT	1 cut(s)	956
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	7 cut(s)	309, 424, 468, 689, 811, 1038, 1155
HspAI	GCGC	2 cut(s)	29, 251
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	4 cut(s)	187, 368, 673, 1009
LmnI	GCTCC	1 cut(s)	798
Lsp1109I	GCAGC	2 cut(s)	713, 743
MaeI	CTAG	4 cut(s)	240, 678, 735, 885
MaeII	ACGT	1 cut(s)	956
MaeIII	GTNAC	3 cut(s)	109, 573, 773
MalI	GATC	4 cut(s)	189, 370, 675, 1011
MbiI	CCGCTC	1 cut(s)	609
MboI	GATC	4 cut(s)	187, 368, 673, 1009
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	5 cut(s)	74, 483, 523, 705, 821
MlyI	GAGTC	4 cut(s)	49, 117, 143, 455
MmeI	TCCRAC	2 cut(s)	571, 977
MseI	TTAA	5 cut(s)	92, 495, 546, 708, 758
MslI	CAYNNNNRTG	2 cut(s)	806, 1111
Mva1269I	GAATGC	2 cut(s)	241, 631
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	5 cut(s)	31, 315, 798, 850, 1122
NcoI	CCATGG	1 cut(s)	464
NdeI	CATATG	1 cut(s)	437
NdeII	GATC	4 cut(s)	187, 368, 673, 1009
NlaIII	CATG	7 cut(s)	309, 424, 468, 689, 811, 1038, 1155
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	3 cut(s)	109, 573, 773
NspI	RCATGY	2 cut(s)	1038, 1155
PaeR7I	CTCGAG	1 cut(s)	52
PciI	ACATGT	1 cut(s)	1151
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	2 cut(s)	241, 631
PkrI	GCNGC	5 cut(s)	33, 608, 703, 730, 733
PleI	GAGTC	4 cut(s)	48, 116, 143, 454
PpsI	GAGTC	4 cut(s)	48, 116, 143, 454
PpuMI	RGGWCCY	1 cut(s)	199
PscI	ACATGT	1 cut(s)	1151
Psp124BI	GAGCTC	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	956
Psp5II	RGGWCCY	1 cut(s)	199
PspPI	GGNCC	4 cut(s)	199, 275, 363, 1052
PspPPI	RGGWCCY	1 cut(s)	199
PspXI	VCTCGAGB	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	833
PstNI	CAGNNNCTG	1 cut(s)	837
RsaI	GTAC	2 cut(s)	343, 1176
RsaNI	GTAC	2 cut(s)	342, 1175
RseI	CAYNNNNRTG	2 cut(s)	806, 1111
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	5 cut(s)	92, 495, 546, 708, 758
SatI	GCNGC	5 cut(s)	32, 607, 702, 729, 732
Sau3AI	GATC	4 cut(s)	187, 368, 673, 1009
Sau96I	GGNCC	4 cut(s)	199, 275, 363, 1052
SchI	GAGTC	4 cut(s)	49, 117, 143, 455
SduI	GDGCHC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	829
Sfr274I	CTCGAG	1 cut(s)	52
SinI	GGWCC	4 cut(s)	199, 275, 363, 1052
SlaI	CTCGAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	806, 1111
SmlI	CTYRAG	2 cut(s)	52, 212
SmoI	CTYRAG	2 cut(s)	52, 212
Sse9I	AATT	5 cut(s)	74, 483, 523, 705, 821
SsiI	CCGC	4 cut(s)	32, 607, 729, 844
SspMI	CTAG	4 cut(s)	240, 678, 735, 885
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	5 cut(s)	230, 388, 464, 677, 717
TaaI	ACNGT	8 cut(s)	377, 384, 671, 788, 839, 869, 979, 1088
TaiI	ACGT	1 cut(s)	959
TaqI	TCGA	3 cut(s)	53, 449, 1027
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	5 cut(s)	74, 483, 523, 705, 821
TatI	WGTACW	2 cut(s)	341, 1174
TauI	GCSGC	3 cut(s)	34, 609, 731
Tru1I	TTAA	5 cut(s)	92, 495, 546, 708, 758
Tru9I	TTAA	5 cut(s)	92, 495, 546, 708, 758
TscAI	CASTG	4 cut(s)	41, 389, 422, 982
TseFI	GTSAC	3 cut(s)	109, 573, 773
TseI	GCWGC	2 cut(s)	701, 731
Tsp45I	GTSAC	3 cut(s)	109, 573, 773
TspDTI	ATGAA	6 cut(s)	471, 528, 671, 674, 895, 908
TspRI	CASTG	4 cut(s)	41, 389, 422, 982
VpaK11BI	GGWCC	4 cut(s)	199, 275, 363, 1052
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	74, 821
XceI	RCATGY	2 cut(s)	1038, 1155
XhoI	CTCGAG	1 cut(s)	52
XmaJI	CCTAGG	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	4 cut(s)	240, 678, 735, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.