Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004279.1

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Forward (+)

104 .. 960

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004279.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgtttatattacaccatctagatttttctgaagaagtacgtaatattgatgacttgcatgcagctgacaaagatgagcgcggggtgaggaagacgaacgatgaagcaatatgtaaaaaatctgagaattgtgaaggtgatcaagatagggtgaagaagaaggggaagaatgttacagaggaacatgtgagaccgtgggataaaatgccacaagctattatggtgaaaatcttaaagctattaccatttccggtttggtcattccacccctgctatgtttgcagttcatggcaagtggcagtcgccgatgtaatgtttccacctgaaaaccgtgagcttaatctgctagtccttgattcatatccctggatattcaggcaaaggtggttccttaaatacctcaggattgccttaaattctccatccgccatctgttggagaacgctttacttgccccagactgcattcatcaaaaatgatatccttagtgagattgctgaaaagacaccggaactgcgtgaactttatgtacctcaaaagttgtgggaagatgttcttcttaagtcggttgcacctaagtggaagaatttgacaagaggtcatatatggttcggctaccaccaagttttcttatctccaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

214

Amino Acids

25.31

Weight (kDa)

8.22

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	435
AccII	CGCG	1 cut(s)	81
AciI	CCGC	2 cut(s)	81, 426
AcsI	RAATTY	2 cut(s)	415, 586
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	39, 531
AfiI	CCNNNNNNNGG	1 cut(s)	435
AflII	CTTAAG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	184
AhdI	GACNNNNNGTC	1 cut(s)	597
AjnI	CCWGG	1 cut(s)	365
AleI	CACNNNNGTG	1 cut(s)	577
AluBI	AGCT	5 cut(s)	65, 215, 238, 337, 642
AluI	AGCT	5 cut(s)	65, 215, 238, 337, 642
Alw26I	GTCTC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	415, 586
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	81
AsuHPI	GGTGA	4 cut(s)	97, 149, 163, 235
AxyI	CCTNAGG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	3 cut(s)	24, 430, 437
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	2 cut(s)	20, 347
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	367
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	194, 365
BsaWI	WCCGGW	2 cut(s)	250, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse21I	CCTNAGG	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	194, 365
BseGI	GGATG	1 cut(s)	422
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	114, 415
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	251, 509
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	464
Bso31I	GGTCTC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	2 cut(s)	81, 426
BspCNI	CTCAG	2 cut(s)	115, 414
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	389
BspTI	CTTAAG	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	194, 365
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	195, 332
BstAFI	CTTAAG	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	123, 401, 485, 576
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 343, 451
BstNI	CCWGG	1 cut(s)	367
BstNSI	RCATGY	2 cut(s)	62, 188
BstSCI	CCNGG	1 cut(s)	365
BstSNI	TACGTA	1 cut(s)	41
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	422
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	38, 530
CspCI	CAANNNNNGTGG	2 cut(s)	524, 559
CviAII	CATG	3 cut(s)	59, 185, 288
CviJI	RGCY	6 cut(s)	65, 215, 238, 337, 615, 642
CviKI_1	RGCY	6 cut(s)	65, 215, 238, 337, 615, 642
CviQI	GTAC	2 cut(s)	38, 530
DdeI	CTNAG	4 cut(s)	123, 401, 485, 576
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DriI	GACNNNNNGTC	1 cut(s)	597
Eam1105I	GACNNNNNGTC	1 cut(s)	597
EciI	GGCGGA	1 cut(s)	415
Eco105I	TACGTA	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	365
EcoRV	GATATC	1 cut(s)	481
FaeI	CATG	3 cut(s)	62, 188, 291
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FatI	CATG	3 cut(s)	58, 184, 287
FauI	CCCGC	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	20, 347
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	63
HapII	CCGG	2 cut(s)	251, 509
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	62, 188, 291
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	2 cut(s)	251, 509
HphI	GGTGA	4 cut(s)	97, 149, 163, 235
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	2 cut(s)	31, 124
Hpy188III	TCNNGA	3 cut(s)	20, 143, 403
Hpy8I	GTNNAC	1 cut(s)	521
HpyAV	CCTTC	2 cut(s)	128, 154
HpyCH4III	ACNGT	2 cut(s)	195, 332
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	5 cut(s)	58, 62, 282, 464, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 343, 451
HpyF3I	CTNAG	4 cut(s)	123, 401, 485, 576
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	3 cut(s)	62, 188, 291
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	9 cut(s)	264, 283, 336, 352, 361, 379, 388, 470, 522
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	20, 347
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	8 cut(s)	44, 103, 166, 169, 178, 548, 560, 595
MluCI	AATT	3 cut(s)	127, 415, 586
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	5 cut(s)	81, 172, 410, 543, 590
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	5 cut(s)	233, 339, 393, 413, 561
MslI	CAYNNNNRTG	1 cut(s)	577
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	251, 509
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	279, 343, 451
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	3 cut(s)	62, 188, 291
NlaIV	GGNNCC	1 cut(s)	389
NspI	RCATGY	2 cut(s)	62, 188
OliI	CACNNNNGTG	1 cut(s)	577
PaeI	GCATGC	1 cut(s)	62
PciI	ACATGT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	41
PscI	ACATGT	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	389
PsrI	GAACNNNNNNTAC	2 cut(s)	513, 545
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	39, 531
RsaNI	GTAC	2 cut(s)	38, 530
RseI	CAYNNNNRTG	1 cut(s)	577
SaqAI	TTAA	5 cut(s)	233, 339, 393, 413, 561
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SnaBI	TACGTA	1 cut(s)	41
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	3 cut(s)	127, 415, 586
SsiI	CCGC	2 cut(s)	81, 426
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	2 cut(s)	20, 347
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	195, 332
TaiI	ACGT	1 cut(s)	43
TasI	AATT	3 cut(s)	127, 415, 586
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	5 cut(s)	233, 339, 393, 413, 561
Tru9I	TTAA	5 cut(s)	233, 339, 393, 413, 561
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	4 cut(s)	117, 276, 348, 457
Van91I	CCANNNNNTGG	1 cut(s)	435
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	2 cut(s)	415, 586
XbaI	TCTAGA	1 cut(s)	19
XceI	RCATGY	2 cut(s)	62, 188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	2 cut(s)	20, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.