Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Forward (+)

93448742 .. 93450711

Gene Structure 1970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGATCGAATGGCGTGCAACTCAATCATGGCCTGCAACTCACAGGTATTCTTAGCACATGGGATCTTGAGACTGCCACCGCCGCAAGTGTCCGGCGGCATCTGGAGGAGGATTTTCGGGTCCATCTTTCGAATACCATCCAAGAACAAATCGACATCTTCTTTGATGATGGGAAAGAGGATGAGAATGAAGGCAAAGGTAGAAGAACAAGACCGGAGATATGTACGTTATCTCCACAGCTTCAAGACTTTGTTCGAGGGGGACCCGAAATGGCCCGTGCGGAGGCAATGAAGAAAATTGTGGCTTATATCCGGGAAGAGGGTTTGCAGATGAATTGTACCCATCTCGTATTTGCAAATGATAAACTAAAGTCCCTTTTTCCTGGCTGTACTAAATCTATCAGTATGTTTCAAATACATGACCTCCTATCCAAGCATGGTCATATACAACCGCTTAAAGCTGGCAAAGATGAGCGCGGGGTGAGGAAGACGAACGATGAAGCAATATGTAAAAAATCTGAGAATTGTGAAGGTGATCAAGCTAGGGTGAAGAAGAAGGGGAAGAATGTTACAGAGGAAGATGTGAGACCGTGGGATAAAATGCCACAAGCTATTATGGTGAAAATCTTAAAGCTATTACCATTTCCTGATTGGTCATTGCACCCCTGCTATGTTTGCAGTTCATGGCAAGTGGCAGTCGCCGATGTAATGTTTCCACCTGAAAACCGTGAGCTTAATCTGCTAGTCCTTGATTCATATCCCTGGATATTCAGGCAAAGGTGGTTCTTTAAATACCTCAGGATTGCCTTAAATTCTCCATCCGCCATCTGTTGGAGAACGCTTTACTTGCCCCAGACTGCATTCATCAAAAATGATATCCTTAGTGAGATTGCTGAAAAGACACCGGAACTGCGTGAACTTTATGTACCTCAAAAGTTGTGGGAAGATGTTCTTCTTAAGTCGGTTGCGCCTAAGTGGAAGAATTTGACAAGAGGTCATATATGGTTCGGCTACCACCAAGTTTTCTTATCTCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

346

Amino Acids

39.92

Weight (kDa)

8.32

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	15 - 54	4.6e-06	DEK C terminal domain
SWIB	PF02201	74 - 146	4.5e-16	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	831
AccII	CGCG	1 cut(s)	477
AciI	CCGC	7 cut(s)	81, 84, 97, 281, 452, 477, 822
AclWI	GGATC	2 cut(s)	13, 72
AcsI	RAATTY	2 cut(s)	811, 982
AfaI	GTAC	4 cut(s)	226, 340, 391, 927
AfiI	CCNNNNNNNGG	3 cut(s)	283, 319, 831
AflII	CTTAAG	1 cut(s)	956
AgsI	TTSAA	2 cut(s)	245, 413
AhdI	GACNNNNNGTC	1 cut(s)	993
AjnI	CCWGG	2 cut(s)	382, 761
AluBI	AGCT	7 cut(s)	241, 461, 542, 611, 634, 733, 1038
AluI	AGCT	7 cut(s)	241, 461, 542, 611, 634, 733, 1038
Alw26I	GTCTC	2 cut(s)	65, 580
AlwI	GGATC	2 cut(s)	13, 72
AoxI	GGCC	2 cut(s)	31, 273
ApoI	RAATTY	2 cut(s)	811, 982
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp700I	GAANNNNTTC	1 cut(s)	948
AspLEI	GCGC	2 cut(s)	477, 970
AspS9I	GGNCC	3 cut(s)	121, 263, 274
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	4 cut(s)	493, 545, 559, 631
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	121, 263
AxyI	CCTNAGG	1 cut(s)	797
BbsI	GAAGAC	1 cut(s)	494
BccI	CCATC	6 cut(s)	132, 146, 164, 351, 826, 833
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	384, 763
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	65, 580
BfaI	CTAG	2 cut(s)	543, 743
BfrI	CTTAAG	1 cut(s)	956
BisI	GCNGC	2 cut(s)	84, 98
BlsI	GCNGC	2 cut(s)	85, 99
Bme1390I	CCNGG	3 cut(s)	314, 384, 763
Bme18I	GGWCC	2 cut(s)	121, 263
BmeRI	GACNNNNNGTC	1 cut(s)	993
BmgT120I	GGNCC	3 cut(s)	121, 263, 274
BmiI	GGNNCC	3 cut(s)	122, 264, 265
BmrFI	CCNGG	3 cut(s)	314, 384, 763
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	580
BsaJI	CCNNGG	2 cut(s)	590, 761
BsaWI	WCCGGW	2 cut(s)	214, 904
BsaXI	ACNNNNNCTCC	4 cut(s)	217, 247, 408, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 319, 831
Bse21I	CCTNAGG	1 cut(s)	797
Bse3DI	GCAATG	2 cut(s)	294, 656
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	2 cut(s)	384, 763
BseDI	CCNNGG	2 cut(s)	590, 761
BseGI	GGATG	3 cut(s)	138, 187, 818
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	3 cut(s)	283, 319, 831
BseMI	GCAATG	2 cut(s)	294, 656
BseMII	CTCAG	2 cut(s)	510, 811
BseRI	GAGGAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	33, 275
BsiSI	CCGG	4 cut(s)	94, 215, 313, 905
BslFI	GGGAC	2 cut(s)	276, 358
BslI	CCNNNNNNNGG	3 cut(s)	283, 319, 831
BsmAI	GTCTC	2 cut(s)	65, 580
BsmFI	GGGAC	2 cut(s)	276, 358
BsmI	GAATGC	1 cut(s)	860
BsnI	GGCC	2 cut(s)	33, 275
Bso31I	GGTCTC	1 cut(s)	580
Bsp119I	TTCGAA	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	5, 64, 535
BspACI	CCGC	7 cut(s)	81, 84, 97, 281, 452, 477, 822
BspANI	GGCC	2 cut(s)	33, 275
BspCNI	CTCAG	2 cut(s)	511, 810
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	3 cut(s)	122, 264, 265
BspPI	GGATC	2 cut(s)	13, 72
BspT104I	TTCGAA	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	956
BspTNI	GGTCTC	1 cut(s)	580
BsrDI	GCAATG	2 cut(s)	294, 656
BssECI	CCNNGG	2 cut(s)	590, 761
BssMI	GATC	3 cut(s)	5, 64, 535
Bst2UI	CCWGG	2 cut(s)	384, 763
Bst4CI	ACNGT	2 cut(s)	591, 728
Bst6I	CTCTTC	1 cut(s)	312
BstAFI	CTTAAG	1 cut(s)	956
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	17, 35, 463
BstDEI	CTNAG	5 cut(s)	53, 519, 797, 881, 972
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	3 cut(s)	138, 187, 818
BstFNI	CGCG	1 cut(s)	477
BstHHI	GCGC	2 cut(s)	477, 970
BstKTI	GATC	3 cut(s)	8, 67, 538
BstMAI	GTCTC	2 cut(s)	65, 580
BstMBI	GATC	3 cut(s)	5, 64, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 675, 739, 847
BstNI	CCWGG	2 cut(s)	384, 763
BstSCI	CCNGG	3 cut(s)	312, 382, 761
BstUI	CGCG	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	797
BsuRI	GGCC	2 cut(s)	33, 275
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	3 cut(s)	138, 187, 818
Cac8I	GCNNGC	3 cut(s)	17, 35, 463
CfoI	GCGC	2 cut(s)	477, 970
Cfr13I	GGNCC	3 cut(s)	121, 263, 274
Csp6I	GTAC	4 cut(s)	225, 339, 390, 926
CspCI	CAANNNNNGTGG	2 cut(s)	920, 955
CviAII	CATG	5 cut(s)	29, 60, 419, 437, 684
CviQI	GTAC	4 cut(s)	225, 339, 390, 926
DdeI	CTNAG	5 cut(s)	53, 519, 797, 881, 972
DpnI	GATC	3 cut(s)	7, 66, 537
DpnII	GATC	3 cut(s)	5, 64, 535
DraI	TTTAAA	1 cut(s)	790
DriI	GACNNNNNGTC	1 cut(s)	993
Eam1104I	CTCTTC	1 cut(s)	312
Eam1105I	GACNNNNNGTC	1 cut(s)	993
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	811
Eco31I	GGTCTC	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	877
Eco47I	GGWCC	2 cut(s)	121, 263
Eco81I	CCTNAGG	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	382, 761
EcoRV	GATATC	1 cut(s)	877
FaeI	CATG	5 cut(s)	32, 63, 422, 440, 687
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FaqI	GGGAC	2 cut(s)	276, 358
FatI	CATG	5 cut(s)	28, 59, 418, 436, 683
FauI	CCCGC	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	84, 98
FokI	GGATG	3 cut(s)	125, 194, 805
Fsp4HI	GCNGC	2 cut(s)	84, 98
FspBI	CTAG	2 cut(s)	543, 743
GlaI	GCGC	2 cut(s)	476, 969
GluI	GCNGC	2 cut(s)	84, 98
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	33, 275
HapII	CCGG	4 cut(s)	94, 215, 313, 905
HhaI	GCGC	2 cut(s)	477, 970
Hin1II	CATG	5 cut(s)	32, 63, 422, 440, 687
Hin6I	GCGC	2 cut(s)	475, 968
HinP1I	GCGC	2 cut(s)	475, 968
HinfI	GANTC	1 cut(s)	752
HpaII	CCGG	4 cut(s)	94, 215, 313, 905
HphI	GGTGA	4 cut(s)	493, 545, 559, 631
Hpy166II	GTNNAC	1 cut(s)	917
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	5 cut(s)	68, 104, 245, 647, 799
Hpy8I	GTNNAC	1 cut(s)	917
HpyAV	CCTTC	3 cut(s)	185, 524, 550
HpyCH4III	ACNGT	2 cut(s)	591, 728
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	7 cut(s)	19, 37, 328, 356, 661, 678, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 675, 739, 847
HpyF3I	CTNAG	5 cut(s)	53, 519, 797, 881, 972
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	5 cut(s)	32, 63, 422, 440, 687
HspAI	GCGC	2 cut(s)	475, 968
KflI	GGGWCCC	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	5, 64, 535
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	543, 743
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	3 cut(s)	7, 66, 537
MboI	GATC	3 cut(s)	5, 64, 535
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	5 cut(s)	297, 334, 523, 811, 982
MmeI	TCCRAC	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	6 cut(s)	456, 629, 735, 789, 809, 957
MspCI	CTTAAG	1 cut(s)	956
MspI	CCGG	4 cut(s)	94, 215, 313, 905
MspR9I	CCNGG	3 cut(s)	314, 384, 763
Mva1269I	GAATGC	1 cut(s)	860
MvaI	CCWGG	2 cut(s)	384, 763
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	83, 675, 739, 847
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	5, 64, 535
NlaIII	CATG	5 cut(s)	32, 63, 422, 440, 687
NlaIV	GGNNCC	3 cut(s)	122, 264, 265
NspV	TTCGAA	1 cut(s)	131
PctI	GAATGC	1 cut(s)	860
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	1 cut(s)	752
PflMI	CCANNNNNTGG	1 cut(s)	831
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	85, 99
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	382, 761
PspGI	CCWGG	2 cut(s)	382, 761
PspN4I	GGNNCC	3 cut(s)	122, 264, 265
PspPI	GGNCC	3 cut(s)	121, 263, 274
PspPPI	RGGWCCY	1 cut(s)	263
PsrI	GAACNNNNNNTAC	2 cut(s)	909, 941
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	4 cut(s)	226, 340, 391, 927
RsaNI	GTAC	4 cut(s)	225, 339, 390, 926
SaqAI	TTAA	6 cut(s)	456, 629, 735, 789, 809, 957
SatI	GCNGC	2 cut(s)	84, 98
Sau3AI	GATC	3 cut(s)	5, 64, 535
Sau96I	GGNCC	3 cut(s)	121, 263, 274
ScrFI	CCNGG	3 cut(s)	314, 384, 763
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	2 cut(s)	121, 263
SmlI	CTYRAG	2 cut(s)	68, 956
SmoI	CTYRAG	2 cut(s)	68, 956
Sse9I	AATT	5 cut(s)	297, 334, 523, 811, 982
SsiI	CCGC	7 cut(s)	81, 84, 97, 281, 452, 477, 822
SspMI	CTAG	2 cut(s)	543, 743
StyD4I	CCNGG	3 cut(s)	312, 382, 761
TaaI	ACNGT	2 cut(s)	591, 728
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	4 cut(s)	8, 131, 153, 256
TasI	AATT	5 cut(s)	297, 334, 523, 811, 982
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	2 cut(s)	86, 100
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	6 cut(s)	456, 629, 735, 789, 809, 957
Tru9I	TTAA	6 cut(s)	456, 629, 735, 789, 809, 957
TspDTI	ATGAA	7 cut(s)	204, 305, 347, 513, 672, 744, 853
Van91I	CCANNNNNTGG	1 cut(s)	831
Vha464I	CTTAAG	1 cut(s)	956
VpaK11BI	GGWCC	2 cut(s)	121, 263
XapI	RAATTY	2 cut(s)	811, 982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	2 cut(s)	543, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.