RchiOBHm_Chr5g0076731

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002106
Physical Location & Seq
Reverse (-)
82468510 .. 82469423
914 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35138

Sequence Viewer

Length: 549 bp
ATGTTGATGCTTTCTTCTAGATTTGGGCAGCTGGAGATGTCAGTAGCGTTTACAGTTATTTTTAGAGCACGTATCAGTTCTTCCAATTGTTGTCTTTGGGGTGTGTTAAACGTATTTATCGCCTTTGAATGTAGACTGCAATTATTTGGCATCGTTAAGCATAAGGTTCAAGGAGATGGTAACTGTCAGGATATTGGAGGATGCGATATTCAGAAGCAAGAAATCCATGAAGCAGTGGAACTTCCACTTATTCACCATGACTTATACAAACAGATTGGAATAGATCCGCCATGTGGTGTATTGCTCTATGGCCCACCTGAAACTGGTAAAACAATGCTAGCTAAGGCTGTGGCTAACCATACAGTGGCTGCTTTCGTTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGCATTTGGGTGAGGGTCCACGAATGGTTCGTGATGTTTTTCGTCTTGCCAAGGAGAATGCACCTGCCATCATCTTTATTGATGAGGTTGATGCTATAGCTACTGCAAGGTTTGATGCTCAAACTGGAGCTTCAAGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

182

Amino Acids

19.94

Weight (kDa)

6.29

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 100 - 176 2.5e-25 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccB7I CCANNNNNTGG 1 cut(s) 364
AccI GTMKAC 1 cut(s) 133
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 395
AfiI CCNNNNNNNGG 3 cut(s) 293, 323, 364
AgsI TTSAA 3 cut(s) 128, 170, 540
AluBI AGCT 4 cut(s) 31, 341, 506, 536
AluI AGCT 4 cut(s) 31, 341, 506, 536
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 28, 368
ApoI RAATTY 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 399
AspS9I GGNCC 2 cut(s) 311, 422
AsuHPI GGTGA 2 cut(s) 245, 428
AsuNHI GCTAGC 1 cut(s) 337
AvaII GGWCC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 40, 355
BccI CCATC 2 cut(s) 170, 482
BfaI CTAG 2 cut(s) 18, 338
BfmI CTRYAG 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 2 cut(s) 29, 369
BlsI GCNGC 2 cut(s) 30, 370
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 311, 422
BmiI GGNNCC 1 cut(s) 423
BmsI GCATC 4 cut(s) 159, 191, 487, 511
BmtI GCTAGC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 456
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 323, 364
Bse1I ACTGG 2 cut(s) 328, 535
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 293, 323, 364
BseNI ACTGG 2 cut(s) 328, 535
BseXI GCAGC 2 cut(s) 40, 355
BshFI GGCC 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 70
BslI CCNNNNNNNGG 3 cut(s) 293, 323, 364
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 478
BspOI GCTAGC 1 cut(s) 341
BspPI GGATC 1 cut(s) 278
BsrI ACTGG 2 cut(s) 328, 535
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 456
Bst4CI ACNGT 3 cut(s) 55, 185, 364
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 40, 355
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 240, 369
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 368
Cfr13I GGNCC 2 cut(s) 311, 422
CviAII CATG 3 cut(s) 227, 257, 291
CviJI RGCY 8 cut(s) 31, 312, 341, 347, 353, 368, 506, 536
CviKI_1 RGCY 8 cut(s) 31, 312, 341, 347, 353, 368, 506, 536
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
EciI GGCGGA 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 3 cut(s) 230, 260, 294
FaiI YATR 8 cut(s) 162, 228, 258, 265, 292, 309, 360, 503
FatI CATG 3 cut(s) 226, 256, 290
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 29, 369
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 29, 369
FspBI CTAG 2 cut(s) 18, 338
GluI GCNGC 2 cut(s) 29, 369
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 312
Hin1II CATG 3 cut(s) 230, 260, 294
HphI GGTGA 2 cut(s) 245, 428
Hpy166II GTNNAC 3 cut(s) 51, 134, 425
Hpy188I TCNGA 3 cut(s) 213, 394, 405
Hpy188III TCNNGA 3 cut(s) 18, 188, 437
Hpy8I GTNNAC 3 cut(s) 51, 134, 425
HpyCH4III ACNGT 3 cut(s) 55, 185, 364
HpyCH4IV ACGT 2 cut(s) 70, 111
HpyCH4V TGCA 3 cut(s) 139, 467, 512
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 70, 111
Hsp92II CATG 3 cut(s) 230, 260, 294
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 533
LpnPI CCDG 6 cut(s) 17, 173, 309, 330, 483, 516
Lsp1109I GCAGC 2 cut(s) 40, 355
LweI GCATC 4 cut(s) 159, 191, 487, 511
MaeI CTAG 2 cut(s) 18, 338
MaeII ACGT 2 cut(s) 70, 111
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 2 cut(s) 6, 72
MfeI CAATTG 1 cut(s) 85
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 85, 140, 395
MnlI CCTC 3 cut(s) 191, 412, 484
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 2 cut(s) 107, 156
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 31
MunI CAATTG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 469
NdeII GATC 1 cut(s) 283
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 3 cut(s) 230, 260, 294
NlaIV GGNNCC 1 cut(s) 423
PaqCI CACCTGC 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 399
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 2 cut(s) 30, 370
Ppu21I YACGTR 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 2 cut(s) 311, 422
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 2 cut(s) 107, 156
SatI GCNGC 2 cut(s) 29, 369
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 311, 422
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 4 cut(s) 159, 191, 487, 511
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 3 cut(s) 85, 140, 395
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 18, 338
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 3 cut(s) 55, 185, 364
TaiI ACGT 2 cut(s) 73, 114
TasI AATT 3 cut(s) 85, 140, 395
Tru1I TTAA 2 cut(s) 107, 156
Tru9I TTAA 2 cut(s) 107, 156
TscAI CASTG 2 cut(s) 240, 369
TseI GCWGC 2 cut(s) 28, 368
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 2 cut(s) 240, 369
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 1 cut(s) 395
XbaI TCTAGA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 2 cut(s) 18, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.