Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002106

Physical Location & Seq

Genomic Coordinates Reverse (-)

49231237 .. 49233441

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009222

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATAAAAGTGCTTTTAGAGTTACTGAAGCACTTGTGTTAAAAGTGGAGAGGGCTACTAGCAATAGTGGTAAGCCATTGCAGGATGGCAAGAAGGATTCAGTTTCTGTGCCTCCTACTTCCACATCATCTTCCGAGTACAATCCTTACATCAAAAGGGAGACTCAAGAAACTGAAGTTTCAAGATCAGAGCCTATTGCCCCGAGGCTTGGTGTAGATTACTGCTTTCTCACCTTGAGTATGTATGCTTACCCACCACCAGATAGAAATATTCTGACCAACATTGTAAATGCTCTTATTGCTGTTCGTCGCTTTAATACTCATCTGGAGATGTCAGTAGCGTTTACAGTTATTTTGAGAGCACGTATCAGTTCTTCCAATTGTTGTCTTTGGGGTGTGTTAAACGTATTTATCGCCTTTGAATGTAGACTGCAATTATATGGCGTCGTTGAGCATAAGGTTCAAGGAGATGCTAACTGTCAGGATATTGAAGGATGCGATATTCAGAAGCAAGAAATCTGTGAAGCAGTGGAACTTCCACTTACTCACCATGACTTATACAAACAGATTGGAATAGATCCGCCACGTGGTGTATTGCTCTATGGCCCACCTAAAACTGGTAAAACAATGCTAGCTAAGGCTATGGCTAACCATACAGCGGCTGCTTTTGTTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGCATTTGGGTGAAGGTCCACGAATGGTTCGTGATGTTTTTCGTCTTGCCAAGGAGAATGCACCTGCCATCATCTTTATTGATGAGGTTGATGCTATAGCTACTGCAAGGTTTGATGCTCAAACTGGAGCTTCAAGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

281

Amino Acids

30.92

Weight (kDa)

6.6

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	198 - 274	2.2e-24	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58290
fragaria_vesca	FvH4_3g40850 FvH4_7g03250
malus_domestica	MD03G1049000.v1.1 MD05G1031100.v1.1 MD11G1051500.v1.1
prunus_persica	Prupe.6G039300_v2.0.a1
pyrus_communis	pycom03g03850 pycom05g02220 pycom11g04130
rosa_chinensis	RchiOBHm_Chr1g0325371 RchiOBHm_Chr5g0027211 RchiOBHm_Chr5g0034141 RchiOBHm_Chr5g0039711 RchiOBHm_Chr5g0073581 RchiOBHm_Chr5g0076731 RchiOBHm_Chr6g0247571
rosa_laevigata	RLG00000009222 RLG00000030144 RLG00000036397
rosa_multiflora	Rmu_co8132346.1_g000001 Rmu_sc0000103.1_g000009 Rmu_sc0020800.1_g000001 Rmu_ssc0000128.1_g000023
rosa_roxburghii	Rroxscaffold_1G00007690 Rroxscaffold_4G00306620 Rroxscaffold_4G00324790
rosa_rugosa	Rorug01G0051600 Rorug05G0425000.1
rosa_samantha	Rh1AG066600 Rh1BG054900 Rh1CG068200 Rh5AG235600 Rh5AG482100 Rh5BG502800 Rh5CG525900 Rh5DG515100 Rh6CG194700 Rh7CG418800
rosa_wichuraiana	Rw0G021430 Rw1G005570 Rw5G021370 Rw5G025060 Rw5G044790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	772
Acc36I	ACCTGC	1 cut(s)	772
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	2 cut(s)	581, 659
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	2 cut(s)	48, 195
AcvI	CACGTG	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	444
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	4 cut(s)	209, 587, 617, 658
AgsI	TTSAA	5 cut(s)	183, 422, 464, 491, 834
AluBI	AGCT	3 cut(s)	635, 800, 830
AluI	AGCT	3 cut(s)	635, 800, 830
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	572
AlwNI	CAGNNNCTG	2 cut(s)	107, 662
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	1 cut(s)	662
ApoI	RAATTY	1 cut(s)	689
Asp700I	GAANNNNTTC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	605, 716
AsuHPI	GGTGA	3 cut(s)	223, 539, 722
AsuNHI	GCTAGC	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	716
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BbrPI	CACGTG	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	649
BccI	CCATC	2 cut(s)	80, 776
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	60, 632
BfmI	CTRYAG	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	772
BisI	GCNGC	2 cut(s)	660, 663
BlsI	GCNGC	2 cut(s)	661, 664
Bme18I	GGWCC	1 cut(s)	716
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	605, 716
BmsI	GCATC	4 cut(s)	460, 485, 781, 805
BmtI	GCTAGC	1 cut(s)	635
BpmI	CTGGAG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	2 cut(s)	150, 256
BsaAI	YACGTR	2 cut(s)	365, 587
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	203, 750
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 587, 617, 658
Bse1I	ACTGG	2 cut(s)	622, 829
Bse3DI	GCAATG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	203, 750
BseGI	GGATG	2 cut(s)	91, 500
BseLI	CCNNNNNNNGG	4 cut(s)	209, 587, 617, 658
BseMI	GCAATG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	622, 829
BseXI	GCAGC	1 cut(s)	649
BshFI	GGCC	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	202
BslI	CCNNNNNNNGG	4 cut(s)	209, 587, 617, 658
BsmAI	GTCTC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	1 cut(s)	606
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	185, 577
BspACI	CCGC	2 cut(s)	581, 659
BspANI	GGCC	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	772
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	622, 829
BssECI	CCNNGG	2 cut(s)	203, 750
BssMI	GATC	2 cut(s)	185, 577
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	349, 479
BstACI	GRCGYC	1 cut(s)	444
BstBAI	YACGTR	2 cut(s)	365, 587
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	91, 500
BstKTI	GATC	2 cut(s)	188, 580
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	185, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	795
BstV1I	GCAGC	1 cut(s)	649
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	91, 500
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	1 cut(s)	633
CaiI	CAGNNNCTG	2 cut(s)	107, 662
Cfr13I	GGNCC	2 cut(s)	605, 716
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	1 cut(s)	551
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	2 cut(s)	187, 579
DpnII	GATC	2 cut(s)	185, 577
DraIII	CACNNNGTG	1 cut(s)	590
EciI	GGCGGA	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	2 cut(s)	48, 195
Eco72I	CACGTG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	1 cut(s)	554
FatI	CATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	660, 663
FokI	GGATG	2 cut(s)	98, 507
Fsp4HI	GCNGC	2 cut(s)	660, 663
FspBI	CTAG	2 cut(s)	60, 632
GluI	GCNGC	2 cut(s)	660, 663
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	606
HgaI	GACGC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	1 cut(s)	554
HinfI	GANTC	2 cut(s)	98, 163
HphI	GGTGA	3 cut(s)	223, 539, 722
Hpy166II	GTNNAC	3 cut(s)	345, 428, 719
Hpy188I	TCNGA	6 cut(s)	136, 190, 276, 507, 688, 699
Hpy188III	TCNNGA	5 cut(s)	167, 183, 326, 482, 731
Hpy8I	GTNNAC	3 cut(s)	345, 428, 719
Hpy99I	CGWCG	2 cut(s)	312, 449
HpyAV	CCTTC	3 cut(s)	88, 485, 707
HpyCH4III	ACNGT	2 cut(s)	349, 479
HpyCH4IV	ACGT	3 cut(s)	364, 405, 586
HpyCH4V	TGCA	4 cut(s)	82, 433, 761, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	3 cut(s)	364, 405, 586
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	1 cut(s)	554
Kzo9I	GATC	2 cut(s)	185, 577
LmnI	GCTCC	1 cut(s)	827
LpnPI	CCDG	7 cut(s)	68, 273, 311, 467, 603, 777, 810
Lsp1109I	GCAGC	1 cut(s)	649
LweI	GCATC	4 cut(s)	460, 485, 781, 805
MaeI	CTAG	2 cut(s)	60, 632
MaeII	ACGT	3 cut(s)	364, 405, 586
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	187, 579
MboI	GATC	2 cut(s)	185, 577
MboII	GAAGA	2 cut(s)	123, 366
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	3 cut(s)	379, 434, 689
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	4 cut(s)	45, 123, 198, 778
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	3 cut(s)	41, 315, 401
MslI	CAYNNNNRTG	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	379
Mva1269I	GAATGC	1 cut(s)	763
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	185, 577
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	1 cut(s)	554
PaqCI	CACCTGC	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	727
PctI	GAATGC	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	661, 664
PleI	GAGTC	1 cut(s)	157
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	2 cut(s)	365, 587
PspCI	CACGTG	1 cut(s)	587
PspPI	GGNCC	2 cut(s)	605, 716
PstNI	CAGNNNCTG	2 cut(s)	107, 662
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	41, 315, 401
SatI	GCNGC	2 cut(s)	660, 663
Sau3AI	GATC	2 cut(s)	185, 577
Sau96I	GGNCC	2 cut(s)	605, 716
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	4 cut(s)	460, 485, 781, 805
SfcI	CTRYAG	1 cut(s)	795
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	2 cut(s)	165, 235
SmoI	CTYRAG	2 cut(s)	165, 235
Sse9I	AATT	3 cut(s)	379, 434, 689
SsiI	CCGC	2 cut(s)	581, 659
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	60, 632
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	349, 479
TaiI	ACGT	3 cut(s)	367, 408, 589
TasI	AATT	3 cut(s)	379, 434, 689
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	3 cut(s)	41, 315, 401
Tru9I	TTAA	3 cut(s)	41, 315, 401
TscAI	CASTG	1 cut(s)	534
TseI	GCWGC	1 cut(s)	662
TspRI	CASTG	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	2 cut(s)	60, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.