Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002106

Physical Location & Seq

Genomic Coordinates Forward (+)

28738775 .. 28743397

Gene Structure 4623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G021370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGCCTACTCTTTCTTCCGACATAAAGCTCACCGACCAGCACCAATCCTCCGAAGAGGACGACCTCTATAACCGCCTCAAGTCCCTACAGCACCAACTGGAGTTCGTAGACATCCAAGAGGAGTACGTCAGGATTCTCAGCACTATTAATCGGGAGCATCTGAAGCCCTCCGCCTCTGTCACCTTGCATCGCCACTCCAACGCCCTCGTCGACGTTCTGCCTCCGGAGGCCGACTCCAAAATCCGTGAAGCAGTGGAACTTCCACTTACACACCATGACTTATACAAACATATTGGAATAGATCCTCCACGTGGTGTATTGTTGTATGGCCCACCTGGAACTGGTAAAACCATGCTAGCTAAGGTTGTTGCCAATCATACAACTACTGCCTTCATTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGTATTTGGGTGAGGGTCCACGAATGGTCCGTGATGTTTTCCGTCTCGCCAAGGAGAATGCACCTGCCATCATCTTTATTGATGAGGTGGATGCTATTGCTACTACAAGGTTTGATGCTCAAACTAGAGCTGATAGAGAAGTTCAGCGAATTCTTATGGAGCTCCTCAATCAGAGCCAGGCAGCCTATCGACTCATCCTGTATAGTTTACCCGCAGTTTACCACTTCACTAGGCATGTGCATATAAATGTAATCATGATTTCTTACCAGGTACTTCCAGGAATTAATCCAATGATAGTTTCTCCTAAAGTTCTTGAAGCTCAGGTAAATTTCATTAGTTATGGTGATCTGATGGTAGAAGCCGTACCCAAGGCTTTTCAAGGCTCAAGGGCCAAAATTCCCTTTCATGGTATTCCTACTCCGGTTCAAGGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

287

Amino Acids

32.29

Weight (kDa)

6.5

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	107 - 204	4.1e-30	ATPase family associated with various cellular activities (AAA)
AAA_2	PF07724	107 - 203	9.8e-07	AAA domain (Cdc48 subfamily)
nSTAND3	PF20720	107 - 217	9.3e-06	Novel STAND NTPase 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58290
fragaria_vesca	FvH4_3g40850 FvH4_7g03250
malus_domestica	MD03G1049000.v1.1 MD05G1031100.v1.1 MD11G1051500.v1.1
prunus_persica	Prupe.6G039300_v2.0.a1
pyrus_communis	pycom03g03850 pycom05g02220 pycom11g04130
rosa_chinensis	RchiOBHm_Chr1g0325371 RchiOBHm_Chr5g0027211 RchiOBHm_Chr5g0034141 RchiOBHm_Chr5g0039711 RchiOBHm_Chr5g0073581 RchiOBHm_Chr5g0076731 RchiOBHm_Chr6g0247571
rosa_laevigata	RLG00000009222 RLG00000030144 RLG00000036397
rosa_multiflora	Rmu_co8132346.1_g000001 Rmu_sc0000103.1_g000009 Rmu_sc0020800.1_g000001 Rmu_ssc0000128.1_g000023
rosa_roxburghii	Rroxscaffold_1G00007690 Rroxscaffold_4G00306620 Rroxscaffold_4G00324790
rosa_rugosa	Rorug01G0051600 Rorug05G0425000.1
rosa_samantha	Rh1AG066600 Rh1BG054900 Rh1CG068200 Rh5AG235600 Rh5AG482100 Rh5BG502800 Rh5CG525900 Rh5DG515100 Rh6CG194700 Rh7CG418800
rosa_wichuraiana	Rw0G021430 Rw1G005570 Rw5G021370 Rw5G025060 Rw5G044790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
AccI	GTMKAC	2 cut(s)	111, 213
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	3 cut(s)	76, 174, 639
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	4 cut(s)	416, 576, 754, 822
AcuI	CTGAAG	1 cut(s)	185
AcvI	CACGTG	1 cut(s)	314
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	3 cut(s)	128, 699, 792
AfiI	CCNNNNNNNGG	4 cut(s)	314, 344, 833, 854
AgsI	TTSAA	3 cut(s)	743, 806, 854
AjnI	CCWGG	4 cut(s)	337, 603, 693, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	709, 741
AluBI	AGCT	5 cut(s)	31, 362, 557, 589, 746
AluI	AGCT	5 cut(s)	31, 362, 557, 589, 746
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	4 cut(s)	231, 331, 816, 857
ApeKI	GCWGC	2 cut(s)	4, 608
ApoI	RAATTY	4 cut(s)	416, 576, 754, 822
AseI	ATTAAT	2 cut(s)	150, 711
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	5 cut(s)	332, 443, 454, 816, 857
AsuHPI	GGTGA	4 cut(s)	25, 175, 449, 782
AsuNHI	GCTAGC	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	443, 454
BanII	GRGCYC	1 cut(s)	591
BbrPI	CACGTG	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	16, 620
BccI	CCATC	2 cut(s)	503, 772
BceAI	ACGGC	2 cut(s)	773, 844
BciT130I	CCWGG	4 cut(s)	339, 605, 695, 705
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	3 cut(s)	359, 552, 657
BfmI	CTRYAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	2 cut(s)	5, 609
BlsI	GCNGC	2 cut(s)	6, 610
Bme1390I	CCNGG	4 cut(s)	339, 605, 695, 705
Bme18I	GGWCC	2 cut(s)	443, 454
BmgT120I	GGNCC	5 cut(s)	332, 443, 454, 816, 857
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	4 cut(s)	339, 605, 695, 705
BmsI	GCATC	4 cut(s)	169, 199, 508, 532
BmtI	GCTAGC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	2 cut(s)	363, 747
BpuEI	CTTGAG	2 cut(s)	65, 796
BsaAI	YACGTR	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	477, 795
BsaWI	WCCGGW	2 cut(s)	226, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 344, 833, 854
Bse1I	ACTGG	2 cut(s)	105, 349
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	4 cut(s)	339, 605, 695, 705
BseDI	CCNNGG	2 cut(s)	477, 795
BseGI	GGATG	3 cut(s)	114, 523, 621
BseLI	CCNNNNNNNGG	4 cut(s)	314, 344, 833, 854
BseMII	CTCAG	2 cut(s)	154, 761
BseNI	ACTGG	2 cut(s)	105, 349
BseRI	GAGGAG	2 cut(s)	137, 581
BseXI	GCAGC	2 cut(s)	16, 620
BshFI	GGCC	4 cut(s)	233, 333, 818, 859
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	2 cut(s)	227, 848
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	4 cut(s)	314, 344, 833, 854
BsmAI	GTCTC	1 cut(s)	476
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	4 cut(s)	233, 333, 818, 859
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	304, 772
BspACI	CCGC	3 cut(s)	76, 174, 639
BspANI	GGCC	4 cut(s)	233, 333, 818, 859
BspCNI	CTCAG	2 cut(s)	153, 760
BspEI	TCCGGA	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	499
BspOI	GCTAGC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	105, 349
BssECI	CCNNGG	2 cut(s)	477, 795
BssMI	GATC	2 cut(s)	304, 772
BssT1I	CCWWGG	2 cut(s)	477, 795
Bst2UI	CCWGG	4 cut(s)	339, 605, 695, 705
Bst6I	CTCTTC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	140, 363, 747
BstF5I	GGATG	3 cut(s)	114, 523, 621
BstKTI	GATC	2 cut(s)	307, 775
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	304, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	4 cut(s)	339, 605, 695, 705
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	4 cut(s)	337, 603, 693, 703
BstSFI	CTRYAG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	16, 620
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	4 cut(s)	233, 333, 818, 859
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	114, 523, 621
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	360
CciI	TCATGA	1 cut(s)	681
Cfr13I	GGNCC	5 cut(s)	332, 443, 454, 816, 857
CsiI	ACCWGGT	1 cut(s)	693
Csp6I	GTAC	3 cut(s)	127, 698, 791
CviAII	CATG	5 cut(s)	278, 355, 662, 682, 833
CviQI	GTAC	3 cut(s)	127, 698, 791
DdeI	CTNAG	3 cut(s)	140, 363, 747
DpnI	GATC	2 cut(s)	306, 774
DpnII	GATC	2 cut(s)	304, 772
DraIII	CACNNNGTG	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	477, 795
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	2 cut(s)	443, 454
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	185
Eco72I	CACGTG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	576
EcoRII	CCWGG	4 cut(s)	337, 603, 693, 703
EcoT14I	CCWWGG	2 cut(s)	477, 795
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	477, 795
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	5 cut(s)	281, 358, 665, 685, 836
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	5 cut(s)	277, 354, 661, 681, 832
FauI	CCCGC	1 cut(s)	646
FblI	GTMKAC	2 cut(s)	111, 213
Fnu4HI	GCNGC	2 cut(s)	5, 609
FokI	GGATG	3 cut(s)	101, 530, 608
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	5, 609
FspBI	CTAG	3 cut(s)	359, 552, 657
GluI	GCNGC	2 cut(s)	5, 609
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	4 cut(s)	233, 333, 818, 859
HapII	CCGG	2 cut(s)	227, 848
Hin1II	CATG	5 cut(s)	281, 358, 665, 685, 836
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	136, 236, 618
HpaII	CCGG	2 cut(s)	227, 848
HphI	GGTGA	4 cut(s)	25, 175, 449, 782
Hpy166II	GTNNAC	5 cut(s)	112, 214, 446, 635, 646
Hpy188I	TCNGA	7 cut(s)	22, 55, 165, 415, 426, 600, 777
Hpy188III	TCNNGA	5 cut(s)	133, 155, 227, 682, 740
Hpy8I	GTNNAC	5 cut(s)	112, 214, 446, 635, 646
Hpy99I	CGWCG	2 cut(s)	215, 218
HpyAV	CCTTC	1 cut(s)	403
HpyCH4IV	ACGT	3 cut(s)	129, 216, 313
HpyCH4V	TGCA	4 cut(s)	4, 190, 488, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	140, 363, 747
HpySE526I	ACGT	3 cut(s)	129, 216, 313
Hsp92II	CATG	5 cut(s)	281, 358, 665, 685, 836
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	304, 772
LmnI	GCTCC	3 cut(s)	157, 586, 594
Lsp1109I	GCAGC	2 cut(s)	16, 620
LweI	GCATC	4 cut(s)	169, 199, 508, 532
MabI	ACCWGGT	1 cut(s)	693
MaeI	CTAG	3 cut(s)	359, 552, 657
MaeII	ACGT	3 cut(s)	129, 216, 313
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	306, 774
MboI	GATC	2 cut(s)	304, 772
MboII	GAAGA	2 cut(s)	9, 68
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	5 cut(s)	416, 576, 708, 754, 822
MlyI	GAGTC	2 cut(s)	230, 612
MmeI	TCCRAC	2 cut(s)	45, 225
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	150, 711
MslI	CAYNNNNRTG	1 cut(s)	672
MspI	CCGG	2 cut(s)	227, 848
MspR9I	CCNGG	4 cut(s)	339, 605, 695, 705
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	4 cut(s)	339, 605, 695, 705
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	2 cut(s)	304, 772
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	5 cut(s)	281, 358, 665, 685, 836
NlaIV	GGNNCC	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	665
PagI	TCATGA	1 cut(s)	681
PaqCI	CACCTGC	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 454
PctI	GAATGC	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	703
PkrI	GCNGC	2 cut(s)	6, 610
PleI	GAGTC	2 cut(s)	230, 612
PmaCI	CACGTG	1 cut(s)	314
PmlI	CACGTG	1 cut(s)	314
PpsI	GAGTC	2 cut(s)	230, 612
Ppu21I	YACGTR	1 cut(s)	314
PshBI	ATTAAT	2 cut(s)	150, 711
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	4 cut(s)	337, 603, 693, 703
PspCI	CACGTG	1 cut(s)	314
PspGI	CCWGG	4 cut(s)	337, 603, 693, 703
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	5 cut(s)	332, 443, 454, 816, 857
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	3 cut(s)	128, 699, 792
RsaNI	GTAC	3 cut(s)	127, 698, 791
RseI	CAYNNNNRTG	1 cut(s)	672
SacI	GAGCTC	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	150, 711
SatI	GCNGC	2 cut(s)	5, 609
Sau3AI	GATC	2 cut(s)	304, 772
Sau96I	GGNCC	5 cut(s)	332, 443, 454, 816, 857
SchI	GAGTC	2 cut(s)	230, 612
ScrFI	CCNGG	4 cut(s)	339, 605, 695, 705
SduI	GDGCHC	1 cut(s)	591
SexAI	ACCWGGT	1 cut(s)	693
SfaNI	GCATC	4 cut(s)	169, 199, 508, 532
SfcI	CTRYAG	1 cut(s)	89
SgrDI	CGTCGACG	1 cut(s)	212
SinI	GGWCC	2 cut(s)	443, 454
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	80, 811
SmoI	CTYRAG	2 cut(s)	80, 811
Sse9I	AATT	5 cut(s)	416, 576, 708, 754, 822
SsiI	CCGC	3 cut(s)	76, 174, 639
SspMI	CTAG	3 cut(s)	359, 552, 657
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	4 cut(s)	337, 603, 693, 703
StyI	CCWWGG	2 cut(s)	477, 795
TaiI	ACGT	3 cut(s)	132, 219, 316
TaqI	TCGA	2 cut(s)	213, 616
TasI	AATT	5 cut(s)	416, 576, 708, 754, 822
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	150, 711
Tru9I	TTAA	2 cut(s)	150, 711
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	4, 608
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	385, 748, 821
TspGWI	ACGGA	3 cut(s)	236, 446, 458
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	2 cut(s)	443, 454
VspI	ATTAAT	2 cut(s)	150, 711
XapI	RAATTY	4 cut(s)	416, 576, 754, 822
XceI	RCATGY	1 cut(s)	665
XmiI	GTMKAC	2 cut(s)	111, 213
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	3 cut(s)	359, 552, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.