Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002106

Physical Location & Seq

Genomic Coordinates Forward (+)

8397398 .. 8397675

Gene Structure 278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCCAGTCAAGGTAGGCAATGCCATGGATGTGGACTATTTGGTCAGTCACATGACAAAAGAAATTGTCCAACACTTCATGGAAGACCTGCTATTGATGAAAATGGAGATTCAAGTTCCACTAGTATGGATGAGGATAGTTGTTCATCATCTCATTTGGCAGAATAATGTCTCAAACAAATCAGTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

63

Amino Acids

7.45

Weight (kDa)

6.48

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58290
fragaria_vesca	FvH4_3g40850 FvH4_7g03250
malus_domestica	MD03G1049000.v1.1 MD05G1031100.v1.1 MD11G1051500.v1.1
prunus_persica	Prupe.6G039300_v2.0.a1
pyrus_communis	pycom03g03850 pycom05g02220 pycom11g04130
rosa_chinensis	RchiOBHm_Chr1g0325371 RchiOBHm_Chr5g0027211 RchiOBHm_Chr5g0034141 RchiOBHm_Chr5g0039711 RchiOBHm_Chr5g0073581 RchiOBHm_Chr5g0076731 RchiOBHm_Chr6g0247571
rosa_laevigata	RLG00000009222 RLG00000030144 RLG00000036397
rosa_multiflora	Rmu_co8132346.1_g000001 Rmu_sc0000103.1_g000009 Rmu_sc0020800.1_g000001 Rmu_ssc0000128.1_g000023
rosa_roxburghii	Rroxscaffold_1G00007690 Rroxscaffold_4G00306620 Rroxscaffold_4G00324790
rosa_rugosa	Rorug01G0051600 Rorug05G0425000.1
rosa_samantha	Rh1AG066600 Rh1BG054900 Rh1CG068200 Rh5AG235600 Rh5AG482100 Rh5BG502800 Rh5CG525900 Rh5DG515100 Rh6CG194700 Rh7CG418800
rosa_wichuraiana	Rw0G021430 Rw1G005570 Rw5G021370 Rw5G025060 Rw5G044790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	113
AhlI	ACTAGT	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	175
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	2 cut(s)	122, 190
BfuAI	ACCTGC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	34, 135
BseMI	GCAATG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	34, 135
BstMAI	GTCTC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	90
BstXI	CCANNNNNNTGG	2 cut(s)	31, 126
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	34, 135
BveI	ACCTGC	1 cut(s)	96
CviAII	CATG	3 cut(s)	25, 52, 79
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	28, 55, 82
FaiI	YATR	4 cut(s)	26, 53, 80, 127
FatI	CATG	3 cut(s)	24, 51, 78
FokI	GGATG	2 cut(s)	41, 142
FspBI	CTAG	2 cut(s)	122, 190
Hin1II	CATG	3 cut(s)	28, 55, 82
HinfI	GANTC	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	34, 187
Hpy8I	GTNNAC	2 cut(s)	34, 187
Hsp92II	CATG	3 cut(s)	28, 55, 82
LpnPI	CCDG	2 cut(s)	18, 101
MaeI	CTAG	2 cut(s)	122, 190
MaeIII	GTNAC	1 cut(s)	47
MboII	GAAGA	1 cut(s)	95
MluCI	AATT	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	29, 124
NcoI	CCATGG	1 cut(s)	24
NlaIII	CATG	3 cut(s)	28, 55, 82
NmuCI	GTSAC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	109
RseI	CAYNNNNRTG	2 cut(s)	29, 124
SetI	ASST	2 cut(s)	15, 90
SgeI	CNNG	8 cut(s)	17, 22, 37, 64, 91, 100, 125, 134
SmiMI	CAYNNNNRTG	2 cut(s)	29, 124
SpeI	ACTAGT	1 cut(s)	121
Sse9I	AATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	122, 190
StyI	CCWWGG	1 cut(s)	24
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	67, 113, 134
XspI	CTAG	2 cut(s)	122, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.