Rmu_co8132346.1_g000001

26S protease regulatory subunit 6B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8132346.1
OG0002106
Physical Location & Seq
Forward (+)
270 .. 631
362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8132346.1_g000001.1.cds

Sequence Viewer

Length: 362 bp
atggcagcgtccgcgatggtgttggacccaaaacccgcggcggagccacccgcttcgttcccatccacaagatccgacctaaagctcaccgaccagcaccaatcctccgacgaggacgatctctacagccgcctcaagtccctccagcgccagctggagttcatcgacatccaagaggagtacgtcaaagacgagcagaagaatctaaagcgcgagctcctccgcgcccaggaggaggtgaagaggatccaatcggtgcctctggtgatcggacagttcatggagatggtggatcagaacaacggcatcgtcgggtccaccaccggctcgaattactatgtcaggattctcagcactattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

120

Amino Acids

13.63

Weight (kDa)

4.86

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AccII CGCG 4 cut(s) 14, 38, 213, 225
AciI CCGC 7 cut(s) 12, 36, 38, 41, 51, 130, 223
AclWI GGATC 4 cut(s) 66, 241, 254, 300
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 229, 235
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 3 cut(s) 85, 154, 217
AluI AGCT 3 cut(s) 85, 154, 217
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 4 cut(s) 66, 241, 254, 300
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 3 cut(s) 150, 213, 227
AspS9I GGNCC 2 cut(s) 25, 315
AsuHPI GGTGA 3 cut(s) 79, 250, 277
AvaII GGWCC 2 cut(s) 25, 315
BamHI GGATCC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 10, 70, 280
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 124
BfoI RGCGCY 1 cut(s) 151
BisI GCNGC 3 cut(s) 6, 39, 130
BlsI GCNGC 3 cut(s) 7, 40, 131
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 25, 315
BmgT120I GGNCC 2 cut(s) 25, 315
BmiI GGNNCC 5 cut(s) 27, 45, 248, 258, 316
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 315
BpmI CTGGAG 2 cut(s) 128, 176
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 36, 228
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 235
Bse118I RCCGGY 1 cut(s) 323
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 36, 228
BseGI GGATG 2 cut(s) 62, 168
BseLI CCNNNNNNNGG 2 cut(s) 229, 235
BseRI GAGGAG 3 cut(s) 191, 209, 248
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 4 cut(s) 14, 38, 213, 225
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 229, 235
BsmFI GGGAC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 5 cut(s) 71, 118, 246, 267, 292
BspACI CCGC 7 cut(s) 12, 36, 38, 41, 51, 130, 223
BspFNI CGCG 4 cut(s) 14, 38, 213, 225
BspLI GGNNCC 5 cut(s) 27, 45, 248, 258, 316
BspPI GGATC 4 cut(s) 66, 241, 254, 300
BspT107I GGYRCC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 323
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 36, 228
BssMI GATC 5 cut(s) 71, 118, 246, 267, 292
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 152, 215
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 2 cut(s) 62, 168
BstFNI CGCG 4 cut(s) 14, 38, 213, 225
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 3 cut(s) 150, 213, 227
BstKTI GATC 5 cut(s) 74, 121, 249, 270, 295
BstMBI GATC 5 cut(s) 71, 118, 246, 267, 292
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 124
BstUI CGCG 4 cut(s) 14, 38, 213, 225
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 71, 246
BstYI RGATCY 2 cut(s) 71, 246
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 2 cut(s) 62, 168
Cac8I GCNNGC 2 cut(s) 152, 215
CfoI GCGC 3 cut(s) 150, 213, 227
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 25, 315
Cfr42I CCGCGG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 280
CviJI RGCY 6 cut(s) 46, 85, 129, 154, 217, 327
CviKI_1 RGCY 6 cut(s) 46, 85, 129, 154, 217, 327
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 350
DpnI GATC 5 cut(s) 73, 120, 248, 269, 294
DpnII GATC 5 cut(s) 71, 118, 246, 267, 292
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 25, 315
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 1 cut(s) 283
FaiI YATR 2 cut(s) 281, 339
FaqI GGGAC 1 cut(s) 124
FatI CATG 1 cut(s) 279
FauI CCCGC 2 cut(s) 43, 58
Fnu4HI GCNGC 3 cut(s) 6, 39, 130
FokI GGATG 2 cut(s) 49, 155
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 3 cut(s) 6, 39, 130
GlaI GCGC 3 cut(s) 149, 212, 226
GluI GCNGC 3 cut(s) 6, 39, 130
GsuI CTGGAG 2 cut(s) 128, 176
HaeII RGCGCY 1 cut(s) 151
HapII CCGG 1 cut(s) 324
HhaI GCGC 3 cut(s) 150, 213, 227
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 3 cut(s) 148, 211, 225
HinP1I GCGC 3 cut(s) 148, 211, 225
HinfI GANTC 2 cut(s) 202, 346
HpaII CCGG 1 cut(s) 324
HphI GGTGA 3 cut(s) 79, 250, 277
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 4 cut(s) 76, 109, 272, 297
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 2 cut(s) 113, 314
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 3 cut(s) 148, 211, 225
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 5 cut(s) 71, 118, 246, 267, 292
LmnI GCTCC 2 cut(s) 43, 222
LpnPI CCDG 9 cut(s) 107, 140, 158, 164, 215, 242, 248, 328, 337
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 315
MaeII ACGT 1 cut(s) 183
MalI GATC 5 cut(s) 73, 120, 248, 269, 294
MboI GATC 5 cut(s) 71, 118, 246, 267, 292
MboII GAAGA 2 cut(s) 211, 253
MflI RGATCY 2 cut(s) 71, 246
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 99, 132
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 2 cut(s) 38, 154
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 4 cut(s) 14, 38, 213, 225
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 5 cut(s) 71, 118, 246, 267, 292
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 5 cut(s) 27, 45, 248, 258, 316
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 2 cut(s) 202, 346
PkrI GCNGC 3 cut(s) 7, 40, 131
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 5 cut(s) 27, 45, 248, 258, 316
PspPI GGNCC 2 cut(s) 25, 315
PsuI RGATCY 2 cut(s) 71, 246
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 219
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 6, 39, 130
Sau3AI GATC 5 cut(s) 71, 118, 246, 267, 292
Sau96I GGNCC 2 cut(s) 25, 315
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 219
SetI ASST 6 cut(s) 81, 87, 156, 186, 219, 240
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 124
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 2 cut(s) 25, 315
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 331
SsiI CCGC 7 cut(s) 12, 36, 38, 41, 51, 130, 223
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 165, 329
TasI AATT 1 cut(s) 331
TauI GCSGC 2 cut(s) 41, 132
TfiI GAWTC 2 cut(s) 202, 346
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 151, 268
VpaK11BI GGWCC 2 cut(s) 25, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.