Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002106

Physical Location & Seq

Genomic Coordinates Reverse (-)

32146873 .. 32149483

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG194700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAACTACATGATGAGAAATTGTGCCTTCGTGGATTTCCAACATGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAATGGGCTGAGGTTTCTTGGGAAGGTGTTAAAAGTGGAGAGGGCTACTAGCAACAGTGGTAAGCCATTGCAGGATGGCAAGAAGGATTCGGTTTCTGTGCCTCCCACTTCCACATCATCTTCCGGGTACAATCCTTACATCAAAAGGGAGACTCAAGAAACTGAAGTTTCAAGATCAGAGCCTATTGCCCCGAGGCTTGGTGTAGATTACTGCTTTGCTCCTCACCTTGAGTATGCTTACCCACCACCAGATAGAAATATTCTGACCAACATTGTAAATGCTCTTATTGCTGTTCGTCGCTTTAATACTCAGCTGGAGATGTCAGTAGCGTTTATAGTTATTTTTAGAGCATGTATCAGTTCTTCCAATTGTTGTCTTTGGGGTGTGTTAAACGTATTTATCGCCTTTGAATGTAGACTGCAATTATATGGCGTCGTTGAGCATAAGGTTCAAGGAGATGGTAACTGTCAGGATATTGGAGGATGCGATATTCAGAAGCAAGAAATCAGTGAAGCAGTGGAACTTCCACTTACTCACCATGACTTATACAAACAGATTGGAATAGATCCGCCACGTGGTGTATTGCTCTATGGCCCACCTGAAACTGGTAAAACAATGCTAGCTAAGGCTGTGGCTAACCATACAGCGGCTGCTTTCGTTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGCATTTGGGTGAGGGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

262

Amino Acids

29.02

Weight (kDa)

7.03

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	220 - 261	1.1e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58290
fragaria_vesca	FvH4_3g40850 FvH4_7g03250
malus_domestica	MD03G1049000.v1.1 MD05G1031100.v1.1 MD11G1051500.v1.1
prunus_persica	Prupe.6G039300_v2.0.a1
pyrus_communis	pycom03g03850 pycom05g02220 pycom11g04130
rosa_chinensis	RchiOBHm_Chr1g0325371 RchiOBHm_Chr5g0027211 RchiOBHm_Chr5g0034141 RchiOBHm_Chr5g0039711 RchiOBHm_Chr5g0073581 RchiOBHm_Chr5g0076731 RchiOBHm_Chr6g0247571
rosa_laevigata	RLG00000009222 RLG00000030144 RLG00000036397
rosa_multiflora	Rmu_co8132346.1_g000001 Rmu_sc0000103.1_g000009 Rmu_sc0020800.1_g000001 Rmu_ssc0000128.1_g000023
rosa_roxburghii	Rroxscaffold_1G00007690 Rroxscaffold_4G00306620 Rroxscaffold_4G00324790
rosa_rugosa	Rorug01G0051600 Rorug05G0425000.1
rosa_samantha	Rh1AG066600 Rh1BG054900 Rh1CG068200 Rh5AG235600 Rh5AG482100 Rh5BG502800 Rh5CG525900 Rh5DG515100 Rh6CG194700 Rh7CG418800
rosa_wichuraiana	Rw0G021430 Rw1G005570 Rw5G021370 Rw5G025060 Rw5G044790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	493
AciI	CCGC	2 cut(s)	647, 725
AclWI	GGATC	1 cut(s)	638
AcsI	RAATTY	1 cut(s)	755
AcuI	CTGAAG	1 cut(s)	261
AcvI	CACGTG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	510
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	4 cut(s)	275, 653, 683, 724
AgsI	TTSAA	4 cut(s)	79, 249, 488, 530
AluBI	AGCT	2 cut(s)	391, 701
AluI	AGCT	2 cut(s)	391, 701
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	638
AlwNI	CAGNNNCTG	1 cut(s)	728
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	1 cut(s)	670
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	755
Asp700I	GAANNNNTTC	1 cut(s)	759
AspS9I	GGNCC	2 cut(s)	671, 782
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	293, 605, 788
AsuNHI	GCTAGC	1 cut(s)	697
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	782
BarI	GAAGNNNNNNTAC	2 cut(s)	424, 456
BbrPI	CACGTG	1 cut(s)	653
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	2 cut(s)	146, 530
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	126, 698
BisI	GCNGC	2 cut(s)	726, 729
BlsI	GCNGC	2 cut(s)	727, 730
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	671, 782
BmiI	GGNNCC	1 cut(s)	783
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	551
BmtI	GCTAGC	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	2 cut(s)	86, 702
BpuEI	CTTGAG	2 cut(s)	216, 326
BpuMI	CCSGG	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 653, 683, 724
Bse1I	ACTGG	1 cut(s)	688
Bse3DI	GCAATG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	157, 566
BseLI	CCNNNNNNNGG	4 cut(s)	275, 653, 683, 724
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	2 cut(s)	77, 401
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	715
BshFI	GGCC	1 cut(s)	672
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	4 cut(s)	275, 653, 683, 724
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	672
BsoBI	CYCGRG	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	251, 643
BspACI	CCGC	2 cut(s)	647, 725
BspANI	GGCC	1 cut(s)	672
BspCNI	CTCAG	2 cut(s)	78, 400
BspLI	GGNNCC	1 cut(s)	783
BspOI	GCTAGC	1 cut(s)	701
BspPI	GGATC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	251, 643
BssNI	GRCGYC	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	134, 545
BstACI	GRCGYC	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	3 cut(s)	86, 387, 702
BstF5I	GGATG	2 cut(s)	157, 566
BstKTI	GATC	2 cut(s)	254, 646
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	251, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 365
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	1 cut(s)	672
BtsCI	GGATG	2 cut(s)	157, 566
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	139, 592, 600
Cac8I	GCNNGC	1 cut(s)	699
CaiI	CAGNNNCTG	1 cut(s)	728
Cfr13I	GGNCC	2 cut(s)	671, 782
CseI	GACGC	2 cut(s)	59, 499
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	5 cut(s)	10, 44, 429, 617, 786
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	86, 387, 702
DpnI	GATC	2 cut(s)	253, 645
DpnII	GATC	2 cut(s)	251, 643
DraIII	CACNNNGTG	1 cut(s)	656
EciI	GGCGGA	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	782
Eco57I	CTGAAG	1 cut(s)	261
Eco72I	CACGTG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	268
FaeI	CATG	5 cut(s)	13, 47, 432, 620, 789
FatI	CATG	5 cut(s)	9, 43, 428, 616, 785
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	726, 729
FokI	GGATG	2 cut(s)	164, 573
Fsp4HI	GCNGC	2 cut(s)	726, 729
FspBI	CTAG	2 cut(s)	126, 698
GluI	GCNGC	2 cut(s)	726, 729
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	672
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	2 cut(s)	59, 499
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	5 cut(s)	13, 47, 432, 620, 789
HinfI	GANTC	2 cut(s)	164, 229
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	3 cut(s)	293, 605, 788
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	5 cut(s)	256, 342, 573, 754, 765
Hpy188III	TCNNGA	3 cut(s)	233, 249, 548
Hpy8I	GTNNAC	1 cut(s)	494
Hpy99I	CGWCG	2 cut(s)	378, 515
HpyAV	CCTTC	4 cut(s)	37, 41, 94, 154
HpyCH4III	ACNGT	2 cut(s)	134, 545
HpyCH4IV	ACGT	2 cut(s)	471, 652
HpyCH4V	TGCA	2 cut(s)	148, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 365
HpyF3I	CTNAG	3 cut(s)	86, 387, 702
HpySE526I	ACGT	2 cut(s)	471, 652
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	5 cut(s)	13, 47, 432, 620, 789
Kzo9I	GATC	2 cut(s)	251, 643
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	134, 214, 339, 377, 533, 669, 690
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	2 cut(s)	126, 698
MaeII	ACGT	2 cut(s)	471, 652
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	2 cut(s)	253, 645
MboI	GATC	2 cut(s)	251, 643
MboII	GAAGA	2 cut(s)	189, 432
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	1 cut(s)	643
MluCI	AATT	4 cut(s)	19, 445, 500, 755
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	81, 111, 189, 264, 309, 551, 772
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	3 cut(s)	107, 381, 467
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	2 cut(s)	391, 725
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	202
MunI	CAATTG	1 cut(s)	445
MwoI	GCNNNNNNNGC	2 cut(s)	62, 365
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	251, 643
NheI	GCTAGC	1 cut(s)	697
NlaIII	CATG	5 cut(s)	13, 47, 432, 620, 789
NlaIV	GGNNCC	1 cut(s)	783
NspI	RCATGY	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	727, 730
PleI	GAGTC	1 cut(s)	223
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	653
PspCI	CACGTG	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	783
PspPI	GGNCC	2 cut(s)	671, 782
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	3 cut(s)	107, 381, 467
SatI	GCNGC	2 cut(s)	726, 729
Sau3AI	GATC	2 cut(s)	251, 643
Sau96I	GGNCC	2 cut(s)	671, 782
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	202
SetI	ASST	9 cut(s)	92, 105, 306, 393, 474, 528, 655, 679, 703
SfaNI	GCATC	1 cut(s)	551
SinI	GGWCC	1 cut(s)	782
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	2 cut(s)	231, 305
SmoI	CTYRAG	2 cut(s)	231, 305
Sse9I	AATT	4 cut(s)	19, 445, 500, 755
SsiI	CCGC	2 cut(s)	647, 725
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	126, 698
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	134, 545
TaiI	ACGT	2 cut(s)	474, 655
TasI	AATT	4 cut(s)	19, 445, 500, 755
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	3 cut(s)	107, 381, 467
Tru9I	TTAA	3 cut(s)	107, 381, 467
TscAI	CASTG	3 cut(s)	139, 592, 600
TseI	GCWGC	1 cut(s)	728
TspDTI	ATGAA	2 cut(s)	17, 60
TspRI	CASTG	3 cut(s)	139, 592, 600
VpaK11BI	GGWCC	1 cut(s)	782
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	1 cut(s)	432
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	2 cut(s)	126, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.