Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002106

Physical Location & Seq

Genomic Coordinates Reverse (-)

27584901 .. 27586498

Gene Structure 1598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00306620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCATCCTACTCTTTCTTCCGACCTAAAGCTCACCAACCACCGCCAATCCTCCGACGAGGACGACCTCTATAGCCGCCTCAAGTCCCTGCGGCGCCGGTGGAGTTCATCGACATCCAAGAGGACTATAACTGAGCTCTTCTTAAAAGCACTTCGAGTATCAATGTTGGCTGTATGGCAAGATGATATCGGGGGATACGACATTCAAAAGCAAGAAATCCATGAAGCAGTGGAACTTCCACTTACACACCATGACTTATACAAACAGATTGGAATAGATCCTCCACGTGGTGTATTGCTGTATGGTCCACCTGGAACTGGTAAAACCATGCTAGCTAAGGCTGTTACCAATCATACAGCTGCTGCCTTCATTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGTATTTGGGTGAGGGTCCACGAATGGTCCGTGATGTTTTCCGTCTCGCCAAGGAGAATGCACCTACCATCATCCTTATTGATGAGGTGGATGCTATTGCTACTGCAAGGTTTGATGCTCAAACTGGAGCTGATAGAGAAGTTCAGCGAATTCTTATGGAGCTCCTCAATCAGGTAGTTCCAGGAAGATTTTATATTGAAGAACAGAAATATTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

206

Amino Acids

23.41

Weight (kDa)

7.03

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	98 - 191	4.1e-29	ATPase family associated with various cellular activities (AAA)
AAA_2	PF07724	98 - 190	7.9e-06	AAA domain (Cdc48 subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58290
fragaria_vesca	FvH4_3g40850 FvH4_7g03250
malus_domestica	MD03G1049000.v1.1 MD05G1031100.v1.1 MD11G1051500.v1.1
prunus_persica	Prupe.6G039300_v2.0.a1
pyrus_communis	pycom03g03850 pycom05g02220 pycom11g04130
rosa_chinensis	RchiOBHm_Chr1g0325371 RchiOBHm_Chr5g0027211 RchiOBHm_Chr5g0034141 RchiOBHm_Chr5g0039711 RchiOBHm_Chr5g0073581 RchiOBHm_Chr5g0076731 RchiOBHm_Chr6g0247571
rosa_laevigata	RLG00000009222 RLG00000030144 RLG00000036397
rosa_multiflora	Rmu_co8132346.1_g000001 Rmu_sc0000103.1_g000009 Rmu_sc0020800.1_g000001 Rmu_ssc0000128.1_g000023
rosa_roxburghii	Rroxscaffold_1G00007690 Rroxscaffold_4G00306620 Rroxscaffold_4G00324790
rosa_rugosa	Rorug01G0051600 Rorug05G0425000.1
rosa_samantha	Rh1AG066600 Rh1BG054900 Rh1CG068200 Rh5AG235600 Rh5AG482100 Rh5BG502800 Rh5CG525900 Rh5DG515100 Rh6CG194700 Rh7CG418800
rosa_wichuraiana	Rw0G021430 Rw1G005570 Rw5G021370 Rw5G025060 Rw5G044790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AciI	CCGC	3 cut(s)	43, 76, 91
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	389, 549
AcvI	CACGTG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	94
AdeI	CACNNNGTG	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	287, 317, 571
AgsI	TTSAA	2 cut(s)	206, 599
AjnI	CCWGG	2 cut(s)	310, 580
AluBI	AGCT	6 cut(s)	31, 136, 335, 359, 530, 562
AluI	AGCT	6 cut(s)	31, 136, 335, 359, 530, 562
Alw21I	GWGCWC	2 cut(s)	138, 564
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	359, 362
ApoI	RAATTY	2 cut(s)	389, 549
Asp700I	GAANNNNTTC	2 cut(s)	393, 611
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	305, 416, 427
AsuHPI	GGTGA	2 cut(s)	25, 422
AsuNHI	GCTAGC	1 cut(s)	331
AvaII	GGWCC	3 cut(s)	305, 416, 427
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	138, 564
BbrPI	CACGTG	1 cut(s)	287
Bbv12I	GWGCWC	2 cut(s)	138, 564
BbvI	GCAGC	2 cut(s)	346, 349
BccI	CCATC	1 cut(s)	476
BciT130I	CCWGG	2 cut(s)	312, 582
BciVI	GTATCC	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	70
BfoI	RGCGCY	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	4 cut(s)	76, 92, 360, 363
BlsI	GCNGC	4 cut(s)	77, 93, 361, 364
Bme1390I	CCNGG	2 cut(s)	312, 582
Bme18I	GGWCC	3 cut(s)	305, 416, 427
BmgT120I	GGNCC	3 cut(s)	305, 416, 427
BmiI	GGNNCC	2 cut(s)	95, 417
BmrFI	CCNGG	2 cut(s)	312, 582
BmsI	GCATC	3 cut(s)	13, 481, 505
BmtI	GCTAGC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 317, 571
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	322, 529
BseBI	CCWGG	2 cut(s)	312, 582
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	4 cut(s)	4, 113, 471, 496
BseLI	CCNNNNNNNGG	3 cut(s)	287, 317, 571
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	322, 529
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	346, 349
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	138, 564
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	3 cut(s)	287, 317, 571
BsmAI	GTCTC	1 cut(s)	449
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	138, 564
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	3 cut(s)	43, 76, 91
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	95, 417
BspOI	GCTAGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	322, 529
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	312, 582
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	132, 336
BstENI	CCTNNNNNAGG	1 cut(s)	569
BstF5I	GGATG	4 cut(s)	4, 113, 471, 496
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	312, 582
BstSCI	CCNGG	2 cut(s)	310, 580
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	346, 349
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	188
BtsCI	GGATG	4 cut(s)	4, 113, 471, 496
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	305, 416, 427
CviAII	CATG	3 cut(s)	221, 251, 328
CviJI	RGCY	9 cut(s)	31, 75, 136, 170, 335, 341, 359, 530, 562
CviKI_1	RGCY	9 cut(s)	31, 75, 136, 170, 335, 341, 359, 530, 562
DdeI	CTNAG	2 cut(s)	132, 336
DinI	GGCGCC	1 cut(s)	95
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraIII	CACNNNGTG	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Ecl136II	GAGCTC	2 cut(s)	136, 562
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	2 cut(s)	138, 564
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	3 cut(s)	305, 416, 427
Eco53kI	GAGCTC	2 cut(s)	136, 562
Eco72I	CACGTG	1 cut(s)	287
EcoICRI	GAGCTC	2 cut(s)	136, 562
EcoNI	CCTNNNNNAGG	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	2 cut(s)	310, 580
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	138, 564
EgeI	GGCGCC	1 cut(s)	95
EheI	GGCGCC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	3 cut(s)	224, 254, 331
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	220, 250, 327
Fnu4HI	GCNGC	4 cut(s)	76, 92, 360, 363
FokI	GGATG	3 cut(s)	100, 458, 503
FriOI	GRGCYC	2 cut(s)	138, 564
Fsp4HI	GCNGC	4 cut(s)	76, 92, 360, 363
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	4 cut(s)	76, 92, 360, 363
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	97
HapII	CCGG	1 cut(s)	97
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	224, 254, 331
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	2 cut(s)	25, 422
Hpy166II	GTNNAC	2 cut(s)	308, 419
Hpy188I	TCNGA	4 cut(s)	22, 55, 388, 399
Hpy8I	GTNNAC	2 cut(s)	308, 419
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	4, 461, 506
HpyF3I	CTNAG	2 cut(s)	132, 336
HpySE526I	ACGT	1 cut(s)	286
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	224, 254, 331
HspAI	GCGC	1 cut(s)	94
KasI	GGCGCC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	277
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	3 cut(s)	527, 559, 567
LpnPI	CCDG	9 cut(s)	101, 110, 297, 303, 324, 510, 557, 567, 594
Lsp1109I	GCAGC	2 cut(s)	346, 349
LweI	GCATC	3 cut(s)	13, 481, 505
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	4 cut(s)	9, 130, 597, 611
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	138, 564
MluCI	AATT	2 cut(s)	389, 549
Mly113I	GGCGCC	1 cut(s)	94
MmeI	TCCRAC	2 cut(s)	45, 78
MnlI	CCTC	9 cut(s)	52, 61, 77, 89, 114, 291, 406, 478, 575
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	393, 611
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	2 cut(s)	312, 582
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	2 cut(s)	312, 582
NarI	GGCGCC	1 cut(s)	94
NdeII	GATC	1 cut(s)	277
NheI	GCTAGC	1 cut(s)	331
NlaIII	CATG	3 cut(s)	224, 254, 331
NlaIV	GGNNCC	2 cut(s)	95, 417
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 427
PctI	GAATGC	1 cut(s)	463
PdmI	GAANNNNTTC	2 cut(s)	393, 611
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	77, 93, 361, 364
PluTI	GGCGCC	1 cut(s)	97
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	287
Psp124BI	GAGCTC	2 cut(s)	138, 564
Psp6I	CCWGG	2 cut(s)	310, 580
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	310, 580
PspN4I	GGNNCC	2 cut(s)	95, 417
PspPI	GGNCC	3 cut(s)	305, 416, 427
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	359
SacI	GAGCTC	2 cut(s)	138, 564
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	4 cut(s)	76, 92, 360, 363
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	3 cut(s)	305, 416, 427
ScrFI	CCNGG	2 cut(s)	312, 582
SduI	GDGCHC	2 cut(s)	138, 564
SfaNI	GCATC	3 cut(s)	13, 481, 505
SfcI	CTRYAG	1 cut(s)	70
SfoI	GGCGCC	1 cut(s)	95
SgrAI	CRCCGGYG	1 cut(s)	96
SinI	GGWCC	3 cut(s)	305, 416, 427
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	389, 549
SsiI	CCGC	3 cut(s)	43, 76, 91
SspDI	GGCGCC	1 cut(s)	93
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	2 cut(s)	138, 564
StyD4I	CCNGG	2 cut(s)	310, 580
StyI	CCWWGG	1 cut(s)	450
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	110, 154
TasI	AATT	2 cut(s)	389, 549
TauI	GCSGC	2 cut(s)	78, 94
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	2 cut(s)	359, 362
TspDTI	ATGAA	3 cut(s)	96, 237, 358
TspGWI	ACGGA	2 cut(s)	419, 431
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	3 cut(s)	305, 416, 427
XagI	CCTNNNNNAGG	1 cut(s)	569
XapI	RAATTY	2 cut(s)	389, 549
XmnI	GAANNNNTTC	2 cut(s)	393, 611
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.