Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000128.1

Orthogroup ID

OG0002106

Physical Location & Seq

Genomic Coordinates Reverse (-)

117889 .. 119549

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000128.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgcagcctactctttcttccgacctaaagctcaccgaccagcaccaatcctccgacgaggatgacctctatagccgcctcaagtccctgcagcgccagttggagttcatagacatccaagaagagtacgtcaggattctcagcactattaatcgggagcatctgaagcccttcgcctcagtcgccttgcattgccactccaaggccctcatcgaagttctgcttccgaaggccaactctagtatttcgctgctcagccagagcgagaagcccgacgtcacctataacgatatcgggggatgtgacattcaaaagcaagaaatccgtgaagcagtggaacttccacttacacaccatgacttatacaaacatattggaatagatcccccacgtggtgtattgctgtatggcccatatggaactggtaaaaccatgctagctaaggctgttgccaatcatacaactgctgccttcattagagttgttggttcagaatttgttcagaagtatttgggtgagggtccacgaatggtctgtgatgttttccgtctcgccaaggagaatgcacctgccatcgtctttattaatgaggtggatgctattgctactacaaggtttgatgctcaaactagagttgatagagaagttcagcgaattcttatggagctcctcaatcaggtagttctaggaagattttatattgaagaacagaaatatttctgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

241

Amino Acids

27.36

Weight (kDa)

5.77

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58290
fragaria_vesca	FvH4_3g40850 FvH4_7g03250
malus_domestica	MD03G1049000.v1.1 MD05G1031100.v1.1 MD11G1051500.v1.1
prunus_persica	Prupe.6G039300_v2.0.a1
pyrus_communis	pycom03g03850 pycom05g02220 pycom11g04130
rosa_chinensis	RchiOBHm_Chr1g0325371 RchiOBHm_Chr5g0027211 RchiOBHm_Chr5g0034141 RchiOBHm_Chr5g0039711 RchiOBHm_Chr5g0073581 RchiOBHm_Chr5g0076731 RchiOBHm_Chr6g0247571
rosa_laevigata	RLG00000009222 RLG00000030144 RLG00000036397
rosa_multiflora	Rmu_co8132346.1_g000001 Rmu_sc0000103.1_g000009 Rmu_sc0020800.1_g000001 Rmu_ssc0000128.1_g000023
rosa_roxburghii	Rroxscaffold_1G00007690 Rroxscaffold_4G00306620 Rroxscaffold_4G00324790
rosa_rugosa	Rorug01G0051600 Rorug05G0425000.1
rosa_samantha	Rh1AG066600 Rh1BG054900 Rh1CG068200 Rh5AG235600 Rh5AG482100 Rh5BG502800 Rh5CG525900 Rh5DG515100 Rh6CG194700 Rh7CG418800
rosa_wichuraiana	Rw0G021430 Rw1G005570 Rw5G021370 Rw5G025060 Rw5G044790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	577
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	494, 654
AcuI	CTGAAG	1 cut(s)	185
AcvI	CACGTG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	202, 392, 676
AgsI	TTSAA	2 cut(s)	311, 704
AluBI	AGCT	3 cut(s)	31, 440, 667
AluI	AGCT	3 cut(s)	31, 440, 667
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	3 cut(s)	204, 231, 409
ApeKI	GCWGC	4 cut(s)	4, 91, 250, 467
ApoI	RAATTY	2 cut(s)	494, 654
AseI	ATTAAT	2 cut(s)	150, 585
Asp700I	GAANNNNTTC	3 cut(s)	170, 498, 716
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	205, 410, 521
AsuHPI	GGTGA	3 cut(s)	25, 271, 527
AsuNHI	GCTAGC	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	669
BbrPI	CACGTG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	4 cut(s)	16, 103, 237, 454
BccI	CCATC	1 cut(s)	581
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	4 cut(s)	240, 437, 630, 686
BfmI	CTRYAG	2 cut(s)	70, 89
BfoI	RGCGCY	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	5 cut(s)	5, 76, 92, 251, 468
BlpI	GCTNAGC	1 cut(s)	254
BlsI	GCNGC	5 cut(s)	6, 77, 93, 252, 469
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	3 cut(s)	205, 410, 521
BmiI	GGNNCC	1 cut(s)	522
BmsI	GCATC	3 cut(s)	169, 586, 610
BmtI	GCTAGC	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	201, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 392, 676
Bse1I	ACTGG	2 cut(s)	97, 427
Bse3DI	GCAATG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	201, 555
BseGI	GGATG	4 cut(s)	67, 114, 305, 601
BseLI	CCNNNNNNNGG	3 cut(s)	202, 392, 676
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	3 cut(s)	154, 192, 268
BseNI	ACTGG	2 cut(s)	97, 427
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	4 cut(s)	16, 103, 237, 454
BshFI	GGCC	3 cut(s)	206, 233, 411
BsiHKAI	GWGCWC	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	3 cut(s)	202, 392, 676
BsmAI	GTCTC	1 cut(s)	554
BsmBI	CGTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	3 cut(s)	206, 233, 411
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp143I	GATC	1 cut(s)	382
Bsp1720I	GCTNAGC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	3 cut(s)	206, 233, 411
BspCNI	CTCAG	3 cut(s)	153, 191, 267
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	577
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	97, 427
BssECI	CCNNGG	2 cut(s)	201, 555
BssMI	GATC	1 cut(s)	382
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	2 cut(s)	201, 555
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	140, 178, 254, 441
BstENI	CCTNNNNNAGG	1 cut(s)	674
BstF5I	GGATG	4 cut(s)	67, 114, 305, 601
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 182
BstSFI	CTRYAG	2 cut(s)	70, 89
BstV1I	GCAGC	4 cut(s)	16, 103, 237, 454
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	206, 233, 411
BtsCI	GGATG	4 cut(s)	67, 114, 305, 601
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	205, 410, 521
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	356, 433
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	4 cut(s)	140, 178, 254, 441
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
DraIII	CACNNNGTG	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	667
Eco130I	CCWWGG	2 cut(s)	201, 555
Eco24I	GRGCYC	1 cut(s)	669
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	185
Eco72I	CACGTG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	667
EcoNI	CCTNNNNNAGG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	654
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	201, 555
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	2 cut(s)	201, 555
Esp3I	CGTCTC	1 cut(s)	554
FaeI	CATG	2 cut(s)	359, 436
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	2 cut(s)	355, 432
FauNDI	CATATG	1 cut(s)	415
Fnu4HI	GCNGC	5 cut(s)	5, 76, 92, 251, 468
FokI	GGATG	4 cut(s)	74, 101, 312, 608
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	5 cut(s)	5, 76, 92, 251, 468
FspBI	CTAG	4 cut(s)	240, 437, 630, 686
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	5 cut(s)	5, 76, 92, 251, 468
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	3 cut(s)	206, 233, 411
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	359, 436
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	3 cut(s)	25, 271, 527
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	6 cut(s)	22, 55, 165, 228, 493, 504
Hpy188III	TCNNGA	2 cut(s)	133, 155
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	2 cut(s)	59, 278
HpyAV	CCTTC	3 cut(s)	181, 223, 481
HpyCH4IV	ACGT	3 cut(s)	129, 276, 391
HpyCH4V	TGCA	4 cut(s)	4, 91, 190, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 182
HpyF3I	CTNAG	4 cut(s)	140, 178, 254, 441
HpySE526I	ACGT	3 cut(s)	129, 276, 391
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	359, 436
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	3 cut(s)	157, 664, 672
LpnPI	CCDG	8 cut(s)	53, 101, 110, 118, 272, 408, 582, 662
Lsp1109I	GCAGC	4 cut(s)	16, 103, 237, 454
LweI	GCATC	3 cut(s)	169, 586, 610
MaeI	CTAG	4 cut(s)	240, 437, 630, 686
MaeII	ACGT	3 cut(s)	129, 276, 391
MaeIII	GTNAC	2 cut(s)	277, 302
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	4 cut(s)	9, 134, 702, 716
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	2 cut(s)	494, 654
MmeI	TCCRAC	3 cut(s)	45, 78, 81
MnlI	CCTC	9 cut(s)	52, 61, 77, 89, 187, 218, 511, 583, 680
MroXI	GAANNNNTTC	3 cut(s)	170, 498, 716
MseI	TTAA	2 cut(s)	150, 585
Mva1269I	GAATGC	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	166, 182
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	1 cut(s)	382
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	359, 436
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	2 cut(s)	277, 302
PaqCI	CACCTGC	1 cut(s)	577
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	3 cut(s)	170, 498, 716
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	5 cut(s)	6, 77, 93, 252, 469
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	392
PshBI	ATTAAT	2 cut(s)	150, 585
Psp124BI	GAGCTC	1 cut(s)	669
PspCI	CACGTG	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	3 cut(s)	205, 410, 521
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	150, 585
SatI	GCNGC	5 cut(s)	5, 76, 92, 251, 468
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	3 cut(s)	205, 410, 521
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	3 cut(s)	169, 586, 610
SfcI	CTRYAG	2 cut(s)	70, 89
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	494, 654
SsiI	CCGC	1 cut(s)	76
SspI	AATATT	1 cut(s)	716
SspMI	CTAG	4 cut(s)	240, 437, 630, 686
SstI	GAGCTC	1 cut(s)	669
StyI	CCWWGG	2 cut(s)	201, 555
TaiI	ACGT	3 cut(s)	132, 279, 394
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	494, 654
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	150, 585
Tru9I	TTAA	2 cut(s)	150, 585
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	2 cut(s)	277, 302
TseI	GCWGC	4 cut(s)	4, 91, 250, 467
Tsp45I	GTSAC	2 cut(s)	277, 302
TspDTI	ATGAA	2 cut(s)	97, 463
TspGWI	ACGGA	2 cut(s)	314, 536
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	521
VspI	ATTAAT	2 cut(s)	150, 585
XagI	CCTNNNNNAGG	1 cut(s)	674
XapI	RAATTY	2 cut(s)	494, 654
XmnI	GAANNNNTTC	3 cut(s)	170, 498, 716
XspI	CTAG	4 cut(s)	240, 437, 630, 686
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.