Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000103.1

Orthogroup ID

OG0002106

Physical Location & Seq

Genomic Coordinates Reverse (-)

35821 .. 42602

Gene Structure 6782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000103.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggtggtgcaaggtgctggatcgggcatcatgggaggcttgcttcgatgtagcgtggcttggacacagcatggacatggcggcacggttgctgcggggcagcctactctttcttccgacctaaagctcaccgaccaacaccaatcctctgacgaggacgacctctatagctgcctcaagtccctgcagcgccaactggagttcatcgacatccaagaggagtacgttaggattctcagcactattaatcgggagcatctgaagccctccacctgcgtagccttgcatcgccactccaacgccctcgtcgacgttctgccgccggaggcctactctagtatttcgttgctcagccaaagcgagaagcccgacgtcacctataacataagccacgtctctgatatcgggggatgcgacattcaaaagcaagaaatccgtgaagcagtggaacttccacttacacaccatgacttatacaaacagattggaatagatcctccacgtggtgtattgctgtatggcccacctggaactggtaaaaccatgctagctaaggctgttgccaatcatacaactgctgccttcattagagttgttggttcagaatttgttcagaagtatttgggtgagggtccacgaatggtccatgatgttttccgtctcgccaaggagaatgcacctgccatcatctttattgatgaggtggatgctattgctactacaaggtttgatgctcaaactggagctgatagaaaagttcagcaaattcttatgaagctcctcaatcagaagtatgatgctgacccagcggcaaagacagctgctgcaactgtcctgggcatccaagttgggtgtggattgcattcaggagatgaatctagagctaatgttgcacaagataatgaacttgtccatcagaatcctcaagcatatgctgcacaagatggaaattggattgctcgtattgcagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

324

Amino Acids

35.14

Weight (kDa)

5.68

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58290
fragaria_vesca	FvH4_3g40850 FvH4_7g03250
malus_domestica	MD03G1049000.v1.1 MD05G1031100.v1.1 MD11G1051500.v1.1
prunus_persica	Prupe.6G039300_v2.0.a1
pyrus_communis	pycom03g03850 pycom05g02220 pycom11g04130
rosa_chinensis	RchiOBHm_Chr1g0325371 RchiOBHm_Chr5g0027211 RchiOBHm_Chr5g0034141 RchiOBHm_Chr5g0039711 RchiOBHm_Chr5g0073581 RchiOBHm_Chr5g0076731 RchiOBHm_Chr6g0247571
rosa_laevigata	RLG00000009222 RLG00000030144 RLG00000036397
rosa_multiflora	Rmu_co8132346.1_g000001 Rmu_sc0000103.1_g000009 Rmu_sc0020800.1_g000001 Rmu_ssc0000128.1_g000023
rosa_roxburghii	Rroxscaffold_1G00007690 Rroxscaffold_4G00306620 Rroxscaffold_4G00324790
rosa_rugosa	Rorug01G0051600 Rorug05G0425000.1
rosa_samantha	Rh1AG066600 Rh1BG054900 Rh1CG068200 Rh5AG235600 Rh5AG482100 Rh5BG502800 Rh5CG525900 Rh5DG515100 Rh6CG194700 Rh7CG418800
rosa_wichuraiana	Rw0G021430 Rw1G005570 Rw5G021370 Rw5G025060 Rw5G044790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	281, 688
AatII	GACGTC	1 cut(s)	375
Acc36I	ACCTGC	2 cut(s)	281, 688
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	4 cut(s)	81, 95, 320, 809
AclWI	GGATC	2 cut(s)	28, 488
AcsI	RAATTY	2 cut(s)	605, 765
AcuI	CTGAAG	1 cut(s)	281
AcvI	CACGTG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	506
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	503, 533
AgsI	TTSAA	1 cut(s)	422
AjiI	CACGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	526, 834
AluBI	AGCT	7 cut(s)	127, 171, 551, 746, 778, 821, 884
AluI	AGCT	7 cut(s)	127, 171, 551, 746, 778, 821, 884
Alw26I	GTCTC	2 cut(s)	400, 665
AlwI	GGATC	2 cut(s)	28, 488
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	2 cut(s)	327, 520
ApeKI	GCWGC	9 cut(s)	92, 100, 171, 187, 578, 821, 824, 935, 968
ApoI	RAATTY	2 cut(s)	605, 765
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	521, 632, 643
AsuHPI	GGTGA	3 cut(s)	121, 367, 638
AsuNHI	GCTAGC	1 cut(s)	547
AvaII	GGWCC	2 cut(s)	632, 643
BbrPI	CACGTG	1 cut(s)	503
BbvI	GCAGC	8 cut(s)	79, 112, 158, 199, 565, 808, 811, 922
BccI	CCATC	3 cut(s)	692, 921, 938
BciT130I	CCWGG	2 cut(s)	528, 836
BcoDI	GTCTC	2 cut(s)	400, 665
BfaI	CTAG	3 cut(s)	336, 548, 879
BfmI	CTRYAG	2 cut(s)	166, 185
BfoI	RGCGCY	1 cut(s)	193
BfuAI	ACCTGC	2 cut(s)	281, 688
BlpI	GCTNAGC	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	528, 836
Bme18I	GGWCC	2 cut(s)	632, 643
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	521, 632, 643
BmiI	GGNNCC	1 cut(s)	633
BmrFI	CCNGG	2 cut(s)	528, 836
BmsI	GCATC	8 cut(s)	36, 265, 295, 401, 697, 721, 787, 849
BmtI	GCTAGC	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	2 cut(s)	218, 762
Bpu10I	CCTNAGC	1 cut(s)	552
Bpu1102I	GCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	161, 909
BsaAI	YACGTR	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	666, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 533
Bse1I	ACTGG	3 cut(s)	201, 538, 745
BseBI	CCWGG	2 cut(s)	528, 836
BseDI	CCNNGG	2 cut(s)	666, 835
BseGI	GGATG	4 cut(s)	210, 416, 712, 840
BseLI	CCNNNNNNNGG	2 cut(s)	503, 533
BseMII	CTCAG	2 cut(s)	250, 364
BseNI	ACTGG	3 cut(s)	201, 538, 745
BseRI	GAGGAG	2 cut(s)	233, 770
BseXI	GCAGC	8 cut(s)	79, 112, 158, 199, 565, 808, 811, 922
BseYI	CCCAGC	1 cut(s)	805
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	2 cut(s)	329, 522
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	503, 533
BsmAI	GTCTC	2 cut(s)	400, 665
BsmBI	CGTCTC	2 cut(s)	400, 665
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	2 cut(s)	679, 862
BsnI	GGCC	2 cut(s)	329, 522
Bsp143I	GATC	2 cut(s)	20, 493
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	4 cut(s)	81, 95, 320, 809
BspANI	GGCC	2 cut(s)	329, 522
BspCNI	CTCAG	2 cut(s)	249, 363
BspLI	GGNNCC	1 cut(s)	633
BspMAI	CTGCAG	1 cut(s)	189
BspMI	ACCTGC	2 cut(s)	281, 688
BspOI	GCTAGC	1 cut(s)	551
BspPI	GGATC	2 cut(s)	28, 488
BsrI	ACTGG	3 cut(s)	201, 538, 745
BssECI	CCNNGG	2 cut(s)	666, 835
BssMI	GATC	2 cut(s)	20, 493
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	2 cut(s)	528, 836
Bst4CI	ACNGT	2 cut(s)	88, 832
BstACI	GRCGYC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	41, 549
BstDEI	CTNAG	3 cut(s)	236, 350, 552
BstF5I	GGATG	4 cut(s)	210, 416, 712, 840
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	23, 496
BstMAI	GTCTC	2 cut(s)	400, 665
BstMBI	GATC	2 cut(s)	20, 493
BstMWI	GCNNNNNNNGC	6 cut(s)	262, 806, 818, 890, 935, 965
BstNI	CCWGG	2 cut(s)	528, 836
BstSCI	CCNGG	2 cut(s)	526, 834
BstSFI	CTRYAG	2 cut(s)	166, 185
BstV1I	GCAGC	8 cut(s)	79, 112, 158, 199, 565, 808, 811, 922
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	329, 522
BtgZI	GCGATG	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	4 cut(s)	210, 416, 712, 840
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	2 cut(s)	281, 688
Cac8I	GCNNGC	2 cut(s)	41, 549
CaiI	CAGNNNCTG	1 cut(s)	824
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	521, 632, 643
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	7 cut(s)	31, 71, 77, 467, 544, 647, 972
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	3 cut(s)	236, 350, 552
DpnI	GATC	2 cut(s)	22, 495
DpnII	GATC	2 cut(s)	20, 493
DraIII	CACNNNGTG	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	632, 643
Eco57I	CTGAAG	1 cut(s)	281
Eco72I	CACGTG	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	526, 834
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	666
Esp3I	CGTCTC	2 cut(s)	400, 665
FaeI	CATG	7 cut(s)	34, 74, 80, 470, 547, 650, 975
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	7 cut(s)	30, 70, 76, 466, 543, 646, 971
FauI	CCCGC	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	931
FblI	GTMKAC	1 cut(s)	309
FokI	GGATG	4 cut(s)	197, 423, 719, 827
FspBI	CTAG	3 cut(s)	336, 548, 879
GlaI	GCGC	1 cut(s)	191
GsaI	CCCAGC	1 cut(s)	809
GsuI	CTGGAG	2 cut(s)	218, 762
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	329, 522
HapII	CCGG	1 cut(s)	323
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	7 cut(s)	34, 74, 80, 470, 547, 650, 975
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	3 cut(s)	232, 875, 919
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	3 cut(s)	121, 367, 638
Hpy166II	GTNNAC	2 cut(s)	310, 635
Hpy188I	TCNGA	8 cut(s)	118, 151, 261, 400, 604, 615, 789, 918
Hpy188III	TCNNGA	3 cut(s)	251, 867, 879
Hpy8I	GTNNAC	2 cut(s)	310, 635
Hpy99I	CGWCG	3 cut(s)	311, 314, 374
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	2 cut(s)	88, 832
HpyCH4IV	ACGT	5 cut(s)	225, 312, 372, 393, 502
HpyCH4V	TGCA	9 cut(s)	10, 187, 286, 677, 827, 862, 893, 938, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	262, 806, 818, 890, 935, 965
HpyF3I	CTNAG	3 cut(s)	236, 350, 552
HpySE526I	ACGT	5 cut(s)	225, 312, 372, 393, 502
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	7 cut(s)	34, 74, 80, 470, 547, 650, 975
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	20, 493
LmnI	GCTCC	3 cut(s)	253, 743, 783
Lsp1109I	GCAGC	8 cut(s)	79, 112, 158, 199, 565, 808, 811, 922
LweI	GCATC	8 cut(s)	36, 265, 295, 401, 697, 721, 787, 849
MaeI	CTAG	3 cut(s)	336, 548, 879
MaeII	ACGT	5 cut(s)	225, 312, 372, 393, 502
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	2 cut(s)	22, 495
MboI	GATC	2 cut(s)	20, 493
MboII	GAAGA	1 cut(s)	105
MflI	RGATCY	1 cut(s)	493
MluCI	AATT	3 cut(s)	605, 765, 949
MmeI	TCCRAC	2 cut(s)	141, 321
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	2 cut(s)	809, 821
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	528, 836
Mva1269I	GAATGC	2 cut(s)	679, 862
MvaI	CCWGG	2 cut(s)	528, 836
MwoI	GCNNNNNNNGC	6 cut(s)	262, 806, 818, 890, 935, 965
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	2 cut(s)	20, 493
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	7 cut(s)	34, 74, 80, 470, 547, 650, 975
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	1 cut(s)	373
PaqCI	CACCTGC	2 cut(s)	281, 688
PceI	AGGCCT	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 411
PctI	GAATGC	2 cut(s)	679, 862
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	232, 875, 919
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	526, 834
PspCI	CACGTG	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	805
PspGI	CCWGG	2 cut(s)	526, 834
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	3 cut(s)	521, 632, 643
PstI	CTGCAG	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	20, 493
Sau96I	GGNCC	3 cut(s)	521, 632, 643
ScrFI	CCNGG	2 cut(s)	528, 836
SfaNI	GCATC	8 cut(s)	36, 265, 295, 401, 697, 721, 787, 849
SfcI	CTRYAG	2 cut(s)	166, 185
SgrDI	CGTCGACG	1 cut(s)	308
SinI	GGWCC	2 cut(s)	632, 643
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	176, 924
SmoI	CTYRAG	2 cut(s)	176, 924
Sse9I	AATT	3 cut(s)	605, 765, 949
SseBI	AGGCCT	1 cut(s)	329
SsiI	CCGC	4 cut(s)	81, 95, 320, 809
SspMI	CTAG	3 cut(s)	336, 548, 879
StuI	AGGCCT	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	526, 834
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	2 cut(s)	88, 832
TaiI	ACGT	5 cut(s)	228, 315, 375, 396, 505
TaqI	TCGA	3 cut(s)	46, 207, 309
TasI	AATT	3 cut(s)	605, 765, 949
TauI	GCSGC	3 cut(s)	84, 322, 812
TfiI	GAWTC	3 cut(s)	232, 875, 919
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	9 cut(s)	92, 100, 171, 187, 578, 821, 824, 935, 968
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	5 cut(s)	193, 574, 788, 888, 918
TspGWI	ACGGA	2 cut(s)	425, 647
TspRI	CASTG	1 cut(s)	450
VpaK11BI	GGWCC	2 cut(s)	632, 643
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	2 cut(s)	605, 765
XbaI	TCTAGA	1 cut(s)	878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	3 cut(s)	336, 548, 879
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.