RchiOBHm_Chr6g0247571

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002106
Physical Location & Seq
Reverse (-)
3515702 .. 3517472
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22191

Sequence Viewer

Length: 543 bp
ATGGCAAGAAGGATTCAGTTTCTGTGCCTCCCACTTCCACATCATCTTCCGGGTACAATCCTTACATCAAAAGGGAGACTGAAGAAACTGAAGTTTCAAGATCAGAGCCTATTGCCCCGAGGCTTGGTATTGCAATTATATGGCGTCGTTGAGCATAAGGTTCAAGGAGATGGTAACTGTCAGGATATTGGAGGATGCGATATTCAGAAGCAAGAAATCCGTGAAGCAGTGGAACTTCCACTTACTCACCATGACTTATACAAACAGATTGGAATAGATCCGCCACGTGGTGTATTGCTCTATGGCCCACCTGAAACTGGTAAAACAATGCTAGCTAAGGCTGTGGCTAACCATACAGCGGCTGCTTTCGTTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGCATTTGGGTGAGGGTCCACGAATGGTTCGTGATGTTTTTCGTCTTGCCAAGGAGAATGCACCTGCCATCATCTTTATTGATGAGGTTGATACTATAGCTACTGCAAGGTTTGATGCTCAAACTGGAGCTTCAAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

180

Amino Acids

19.79

Weight (kDa)

8.81

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 98 - 174 3.2e-25 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
AciI CCGC 2 cut(s) 281, 359
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 2 cut(s) 101, 110
AcvI CACGTG 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 290
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 4 cut(s) 124, 287, 317, 358
AgsI TTSAA 3 cut(s) 98, 164, 534
AluBI AGCT 3 cut(s) 335, 500, 530
AluI AGCT 3 cut(s) 335, 500, 530
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 2 cut(s) 22, 362
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 305, 416
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 239, 422
AsuNHI GCTAGC 1 cut(s) 331
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 1 cut(s) 416
BbrPI CACGTG 1 cut(s) 287
BbvI GCAGC 1 cut(s) 349
BccI CCATC 2 cut(s) 164, 476
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 2 cut(s) 360, 363
BlsI GCNGC 2 cut(s) 361, 364
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 305, 416
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 185, 505
BmtI GCTAGC 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 118, 450
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 287, 317, 358
Bse1I ACTGG 2 cut(s) 322, 529
BseDI CCNNGG 2 cut(s) 118, 450
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 4 cut(s) 124, 287, 317, 358
BseNI ACTGG 2 cut(s) 322, 529
BseXI GCAGC 1 cut(s) 349
BshFI GGCC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 4 cut(s) 124, 287, 317, 358
BsmAI GTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 117
Bsp143I GATC 2 cut(s) 100, 277
BspACI CCGC 2 cut(s) 281, 359
BspANI GGCC 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 472
BspOI GCTAGC 1 cut(s) 335
BspPI GGATC 1 cut(s) 272
BsrI ACTGG 2 cut(s) 322, 529
BssECI CCNNGG 2 cut(s) 118, 450
BssMI GATC 2 cut(s) 100, 277
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 2 cut(s) 103, 280
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 100, 277
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 200
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 2 cut(s) 22, 362
Cfr13I GGNCC 2 cut(s) 305, 416
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 54
CviAII CATG 1 cut(s) 251
CviJI RGCY 9 cut(s) 108, 123, 306, 335, 341, 347, 362, 500, 530
CviKI_1 RGCY 9 cut(s) 108, 123, 306, 335, 341, 347, 362, 500, 530
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 102, 279
DpnII GATC 2 cut(s) 100, 277
DraIII CACNNNGTG 1 cut(s) 290
EciI GGCGGA 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 2 cut(s) 101, 110
Eco72I CACGTG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 1 cut(s) 254
FaiI YATR 8 cut(s) 139, 141, 156, 252, 259, 303, 354, 497
FatI CATG 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 360, 363
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 360, 363
FspBI CTAG 1 cut(s) 332
GluI GCNGC 2 cut(s) 360, 363
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 254
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 239, 422
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 4 cut(s) 105, 207, 388, 399
Hpy188III TCNNGA 3 cut(s) 98, 182, 431
Hpy8I GTNNAC 1 cut(s) 419
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 3 cut(s) 133, 461, 506
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 286
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 2 cut(s) 100, 277
LmnI GCTCC 1 cut(s) 527
LpnPI CCDG 6 cut(s) 63, 167, 303, 324, 477, 510
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 2 cut(s) 185, 505
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 173
MalI GATC 2 cut(s) 102, 279
MboI GATC 2 cut(s) 100, 277
MboII GAAGA 2 cut(s) 38, 94
MflI RGATCY 1 cut(s) 277
MluCI AATT 2 cut(s) 134, 389
MnlI CCTC 5 cut(s) 38, 113, 185, 406, 478
MroXI GAANNNNTTC 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 463
NciI CCSGG 1 cut(s) 51
NdeII GATC 2 cut(s) 100, 277
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 417
PaqCI CACCTGC 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 427
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 361, 364
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 287
PspCI CACGTG 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 2 cut(s) 305, 416
PstNI CAGNNNCTG 2 cut(s) 22, 362
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 408
SatI GCNGC 2 cut(s) 360, 363
Sau3AI GATC 2 cut(s) 100, 277
Sau96I GGNCC 2 cut(s) 305, 416
ScrFI CCNGG 1 cut(s) 51
SetI ASST 9 cut(s) 162, 289, 313, 337, 466, 489, 502, 512, 532
SfaNI GCATC 2 cut(s) 185, 505
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 2 cut(s) 134, 389
SsiI CCGC 2 cut(s) 281, 359
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 1 cut(s) 289
TasI AATT 2 cut(s) 134, 389
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 1 cut(s) 234
TseI GCWGC 1 cut(s) 362
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.