RchiOBHm_Chr6g0274051

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004883
Physical Location & Seq
Reverse (-)
35236456 .. 35239673
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24586

Sequence Viewer

Length: 342 bp
ATGCCGTTGTTGGTGGAATTTCAAGCTGTATCAGTTTCAGATAATGTCGACTATGATGTCATATTAGTTAACAGAATGGGTCGTCCAGTTGGAGATGCGGATGAGATTTTAAGAAGGTGGAAAATAAGGAGGCATGAGTTGCGAAATTCAATGAACACTATCATTCTTCCCCTTGGAAAAATTGATGTTGGACATTCACGCCACCGGGCCCTTCTCTTTAAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTAATGATGGAGCTGTAAAATTGATAGTGGAATTGGAAGTGAATATATTATTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.81

Weight (kDa)

8.85

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 24 - 104 1.2e-29 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 48
AciI CCGC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 17, 145
AfaI GTAC 2 cut(s) 225, 283
AgsI TTSAA 2 cut(s) 23, 150
AluBI AGCT 4 cut(s) 26, 230, 270, 296
AluI AGCT 4 cut(s) 26, 230, 270, 296
AoxI GGCC 1 cut(s) 207
ApaI GGGCCC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 17, 145
AspS9I GGNCC 2 cut(s) 207, 208
AsuC2I CCSGG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 211
BccI CCATC 1 cut(s) 284
BcnI CCSGG 1 cut(s) 206
BfaI CTAG 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 207, 208
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 211
BshFI GGCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 205
BsnI GGCC 1 cut(s) 209
Bsp120I GGGCCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 336
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 139
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 1 cut(s) 339
BstMBI GATC 1 cut(s) 336
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 207, 208
Csp6I GTAC 2 cut(s) 224, 282
CviAII CATG 2 cut(s) 134, 249
CviJI RGCY 5 cut(s) 26, 209, 230, 270, 296
CviKI_1 RGCY 5 cut(s) 26, 209, 230, 270, 296
CviQI GTAC 2 cut(s) 224, 282
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 137, 252
FaiI YATR 6 cut(s) 54, 62, 135, 250, 254, 329
FatI CATG 2 cut(s) 133, 248
FblI GTMKAC 1 cut(s) 48
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 211
FspBI CTAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 205
Hin1II CATG 2 cut(s) 137, 252
HincII GTYRAC 2 cut(s) 49, 70
HindII GTYRAC 2 cut(s) 49, 70
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 49, 70
Hpy188I TCNGA 2 cut(s) 40, 341
Hpy8I GTNNAC 2 cut(s) 49, 70
HpyAV CCTTC 2 cut(s) 108, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
Hsp92II CATG 2 cut(s) 137, 252
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 3 cut(s) 99, 218, 242
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 227
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MboII GAAGA 2 cut(s) 158, 236
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 5 cut(s) 17, 145, 180, 302, 314
MmeI TCCRAC 2 cut(s) 70, 169
MnlI CCTC 1 cut(s) 123
MseI TTAA 3 cut(s) 69, 110, 219
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 139
NciI CCSGG 1 cut(s) 206
NdeII GATC 1 cut(s) 336
NlaIII CATG 2 cut(s) 137, 252
NlaIV GGNNCC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 209
PspOMI GGGCCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 207, 208
RsaI GTAC 2 cut(s) 225, 283
RsaNI GTAC 2 cut(s) 224, 282
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 3 cut(s) 69, 110, 219
Sau3AI GATC 1 cut(s) 336
Sau96I GGNCC 2 cut(s) 207, 208
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 211
SetI ASST 7 cut(s) 28, 119, 225, 232, 268, 272, 298
SfaNI GCATC 1 cut(s) 85
Sse9I AATT 5 cut(s) 17, 145, 180, 302, 314
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 172
TaqI TCGA 1 cut(s) 48
TasI AATT 5 cut(s) 17, 145, 180, 302, 314
Tru1I TTAA 3 cut(s) 69, 110, 219
Tru9I TTAA 3 cut(s) 69, 110, 219
TspDTI ATGAA 1 cut(s) 167
XapI RAATTY 2 cut(s) 17, 145
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.