Rh5AG542200

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004883
Physical Location & Seq
Forward (+)
93036610 .. 93116014
79405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG542200.1

Sequence Viewer

Length: 726 bp
ATGGTTGGTATGGGTGAAGGGAAGGAGAAAGAAAAATCATTTTCCCTAGCGTCGTGCTCCAGCAGGTCTGTAGAAGGCCAAGAAGGTCTTCTTCCTGGGGAGAAGAAAGGGAAAAAGCACCACCATCGCCATCATCATCGGGACCTTGAGGTGACGTACATGGGGAATGATGTGGTGGGTGCGAGTGCCAATAAGAAACCGCTGATCTGTTTGTCTCTCACTTTGTGGACTGCATCTTGTCGATCTCCACTCTCAAAACAGAATGAGAGAGCAGAATCAGAGCAGACGAAAGCAGAAAATCTGATAGCGCAGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGAGCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGTGAATATATTATTGATCTGATGGGTGCTTCTGGAACACTAATTCCTGCTAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.81

Weight (kDa)

6.41

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 173 - 237 8.3e-16 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AciI CCGC 1 cut(s) 200
AclI AACGTT 1 cut(s) 443
AcsI RAATTY 1 cut(s) 482
AdeI CACNNNGTG 1 cut(s) 225
AfaI GTAC 3 cut(s) 158, 561, 619
AfiI CCNNNNNNNGG 1 cut(s) 719
AgsI TTSAA 5 cut(s) 362, 367, 410, 437, 505
AjnI CCWGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AloI GAACNNNNNNTCC 2 cut(s) 694, 726
AluBI AGCT 8 cut(s) 343, 376, 466, 475, 529, 566, 606, 632
AluI AGCT 8 cut(s) 343, 376, 466, 475, 529, 566, 606, 632
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 219
AoxI GGCC 2 cut(s) 76, 537
ApaI GGGCCC 1 cut(s) 541
ApeKI GCWGC 1 cut(s) 529
ApoI RAATTY 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 2 cut(s) 310, 460
AspS9I GGNCC 3 cut(s) 142, 537, 538
AsuHPI GGTGA 2 cut(s) 26, 163
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 541
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 516
BccI CCATC 4 cut(s) 132, 138, 620, 682
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 2 cut(s) 47, 563
BfmI CTRYAG 2 cut(s) 69, 530
BfuAI ACCTGC 1 cut(s) 54
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 1 cut(s) 530
BlsI GCNGC 1 cut(s) 531
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 3 cut(s) 142, 537, 538
BmiI GGNNCC 3 cut(s) 143, 538, 539
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMII CTCAG 2 cut(s) 363, 462
BseRI GAGGAG 1 cut(s) 526
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 1 cut(s) 516
BshFI GGCC 2 cut(s) 78, 539
BsiHKAI GWGCWC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 78, 539
Bsp120I GGGCCC 1 cut(s) 537
Bsp1286I GDGCHC 2 cut(s) 59, 541
Bsp143I GATC 3 cut(s) 204, 242, 682
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 78, 539
BspCNI CTCAG 2 cut(s) 362, 463
BspLI GGNNCC 3 cut(s) 143, 538, 539
BspMAI CTGCAG 1 cut(s) 534
BspMI ACCTGC 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 3 cut(s) 204, 242, 682
Bst2UI CCWGG 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 3 cut(s) 349, 471, 717
BstHHI GCGC 2 cut(s) 310, 460
BstKTI GATC 3 cut(s) 207, 245, 685
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 3 cut(s) 204, 242, 682
BstMWI GCNNNNNNNGC 2 cut(s) 389, 472
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 2 cut(s) 69, 530
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 1 cut(s) 516
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 78, 539
BtgZI GCGATG 1 cut(s) 110
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 399, 494
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 2 cut(s) 310, 460
Cfr13I GGNCC 3 cut(s) 142, 537, 538
CseI GACGC 1 cut(s) 39
Csp6I GTAC 3 cut(s) 157, 560, 618
CviAII CATG 2 cut(s) 160, 585
CviQI GTAC 3 cut(s) 157, 560, 618
DdeI CTNAG 3 cut(s) 349, 471, 717
DpnI GATC 3 cut(s) 206, 244, 684
DpnII GATC 3 cut(s) 204, 242, 682
DraIII CACNNNGTG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 142
EcoO109I RGGNCCY 2 cut(s) 142, 537
EcoRII CCWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 541
FaeI CATG 2 cut(s) 163, 588
FaiI YATR 5 cut(s) 11, 161, 586, 590, 675
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 75, 107
FaqI GGGAC 1 cut(s) 155
FatI CATG 2 cut(s) 159, 584
Fnu4HI GCNGC 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 541
Fsp4HI GCNGC 1 cut(s) 530
FspBI CTAG 2 cut(s) 47, 563
GlaI GCGC 2 cut(s) 309, 459
GluI GCNGC 1 cut(s) 530
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 2 cut(s) 78, 539
HgaI GACGC 1 cut(s) 39
HhaI GCGC 2 cut(s) 310, 460
Hin1II CATG 2 cut(s) 163, 588
Hin6I GCGC 2 cut(s) 308, 458
HinP1I GCGC 2 cut(s) 308, 458
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 1 cut(s) 275
HphI GGTGA 2 cut(s) 26, 163
Hpy166II GTNNAC 2 cut(s) 228, 637
Hpy188I TCNGA 5 cut(s) 280, 303, 352, 481, 687
Hpy188III TCNNGA 2 cut(s) 140, 699
Hpy8I GTNNAC 2 cut(s) 228, 637
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 5 cut(s) 11, 16, 68, 77, 448
HpyCH4IV ACGT 2 cut(s) 155, 443
HpyCH4V TGCA 2 cut(s) 233, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 472
HpyF3I CTNAG 3 cut(s) 349, 471, 717
HpySE526I ACGT 2 cut(s) 155, 443
Hsp92II CATG 2 cut(s) 163, 588
HspAI GCGC 2 cut(s) 308, 458
Kzo9I GATC 3 cut(s) 204, 242, 682
LmnI GCTCC 5 cut(s) 62, 381, 463, 513, 629
Lsp1109I GCAGC 1 cut(s) 516
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 47, 563
MaeII ACGT 2 cut(s) 155, 443
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 206, 244, 684
MboI GATC 3 cut(s) 204, 242, 682
MboII GAAGA 6 cut(s) 80, 83, 115, 430, 433, 572
MhlI GDGCHC 2 cut(s) 59, 541
MluCI AATT 7 cut(s) 357, 362, 482, 552, 648, 660, 708
MnlI CCTC 4 cut(s) 142, 394, 504, 550
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 4 cut(s) 426, 446, 551, 645
MspA1I CMGCKG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 389, 472
NdeII GATC 3 cut(s) 204, 242, 682
NlaIII CATG 2 cut(s) 163, 588
NlaIV GGNNCC 3 cut(s) 143, 538, 539
NmuCI GTSAC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 531
PpuMI RGGWCCY 1 cut(s) 142
Psp1406I AACGTT 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 3 cut(s) 143, 538, 539
PspOMI GGGCCC 1 cut(s) 537
PspPI GGNCC 3 cut(s) 142, 537, 538
PspPPI RGGWCCY 1 cut(s) 142
PstI CTGCAG 1 cut(s) 534
RsaI GTAC 3 cut(s) 158, 561, 619
RsaNI GTAC 3 cut(s) 157, 560, 618
SaqAI TTAA 4 cut(s) 426, 446, 551, 645
SatI GCNGC 1 cut(s) 530
Sau3AI GATC 3 cut(s) 204, 242, 682
Sau96I GGNCC 3 cut(s) 142, 537, 538
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 2 cut(s) 59, 541
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 2 cut(s) 69, 530
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 7 cut(s) 357, 362, 482, 552, 648, 660, 708
SsiI CCGC 1 cut(s) 200
SspMI CTAG 2 cut(s) 47, 563
StyD4I CCNGG 1 cut(s) 94
TaiI ACGT 2 cut(s) 158, 446
TaqI TCGA 1 cut(s) 241
TasI AATT 7 cut(s) 357, 362, 482, 552, 648, 660, 708
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 4 cut(s) 426, 446, 551, 645
Tru9I TTAA 4 cut(s) 426, 446, 551, 645
TscAI CASTG 2 cut(s) 399, 501
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 529
Tsp45I GTSAC 1 cut(s) 151
TspRI CASTG 2 cut(s) 399, 501
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 2 cut(s) 47, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.