Rh4AG058600

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004883
Physical Location & Seq
Reverse (-)
12230457 .. 12271373
40917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG058600.1

Sequence Viewer

Length: 480 bp
ATGAATGAGAGAGCAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCAGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCGGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAACAATGATGAGCTGCAGGGGGCCCATAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGAAAGGTTTCCAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTCGCAAGCCTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.12

Weight (kDa)

5.02

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 98 - 137 2.6e-10 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclI AACGTT 1 cut(s) 185
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 2 cut(s) 303, 361
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 6 cut(s) 104, 109, 152, 179, 247, 407
AluBI AGCT 8 cut(s) 85, 118, 208, 271, 308, 348, 374, 431
AluI AGCT 8 cut(s) 85, 118, 208, 271, 308, 348, 374, 431
AoxI GGCC 1 cut(s) 279
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 2 cut(s) 52, 202
AspS9I GGNCC 2 cut(s) 279, 280
AsuHPI GGTGA 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 258
BccI CCATC 1 cut(s) 362
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 272
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 279, 280
BmiI GGNNCC 2 cut(s) 280, 281
BmsI GCATC 1 cut(s) 409
Bsc4I CCNNNNNNNGG 1 cut(s) 449
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 258
BshFI GGCC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 449
BsnI GGCC 1 cut(s) 281
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 280, 281
BspMAI CTGCAG 1 cut(s) 276
BssMI GATC 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 54, 469
BstDEI CTNAG 1 cut(s) 91
BstHHI GCGC 2 cut(s) 52, 202
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 131, 428
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 54, 469
CfoI GCGC 2 cut(s) 52, 202
Cfr13I GGNCC 2 cut(s) 279, 280
Csp6I GTAC 2 cut(s) 302, 360
CviAII CATG 2 cut(s) 327, 455
CviQI GTAC 2 cut(s) 302, 360
DdeI CTNAG 1 cut(s) 91
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 283
FaeI CATG 2 cut(s) 330, 458
FaiI YATR 6 cut(s) 285, 328, 332, 446, 450, 456
FatI CATG 2 cut(s) 326, 454
Fnu4HI GCNGC 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 305
GlaI GCGC 2 cut(s) 51, 201
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 281
HhaI GCGC 2 cut(s) 52, 202
Hin1II CATG 2 cut(s) 330, 458
Hin6I GCGC 2 cut(s) 50, 200
HinP1I GCGC 2 cut(s) 50, 200
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 4 cut(s) 22, 45, 94, 223
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 428
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 2 cut(s) 330, 458
HspAI GCGC 2 cut(s) 50, 200
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 5 cut(s) 123, 205, 255, 371, 428
LpnPI CCDG 8 cut(s) 38, 116, 128, 170, 188, 260, 320, 429
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 185
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 4 cut(s) 40, 172, 175, 314
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 6 cut(s) 99, 104, 224, 294, 390, 402
MnlI CCTC 3 cut(s) 136, 246, 292
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 4 cut(s) 168, 188, 293, 387
MwoI GCNNNNNNNGC 2 cut(s) 131, 428
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 330, 458
NlaIV GGNNCC 2 cut(s) 280, 281
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 273
Psp1406I AACGTT 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 280, 281
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 279, 280
PstI CTGCAG 1 cut(s) 276
RsaI GTAC 2 cut(s) 303, 361
RsaNI GTAC 2 cut(s) 302, 360
SaqAI TTAA 4 cut(s) 168, 188, 293, 387
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 2 cut(s) 279, 280
SduI GDGCHC 1 cut(s) 283
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 272
Sse9I AATT 6 cut(s) 99, 104, 224, 294, 390, 402
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 305
TaiI ACGT 1 cut(s) 188
TasI AATT 6 cut(s) 99, 104, 224, 294, 390, 402
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 4 cut(s) 168, 188, 293, 387
Tru9I TTAA 4 cut(s) 168, 188, 293, 387
TscAI CASTG 1 cut(s) 243
TseI GCWGC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 243
XapI RAATTY 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.