Rh5AG447100

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004883
Physical Location & Seq
Reverse (-)
76818487 .. 76857402
38916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG447100.1

Sequence Viewer

Length: 540 bp
ATGCATGAACACATATTAAACACTAGGTGGCGAGTTAACATCCCGACAACGAAGTCAACCATAGCAATCCGCGAAGTCGACCGTAGCAATCCGCGAAGTCGACATCTGCTAAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCATAAAGAGTTAATTGAGGTTTCCAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTCGCAAGCCTTTGGTAGCCGTGCTGCTATTAAAGGTTGTCTTCAATGAATATATTATTGATCTGATGGGTGCTTCTGGAACACTAATTCCTGCTAAGATGTGGTTCATGATGTGTCTCAGCATATGGAAGAGAGGCCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

21.05

Weight (kDa)

9.06

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccI GTMKAC 2 cut(s) 78, 100
AccII CGCG 2 cut(s) 72, 94
AciI CCGC 2 cut(s) 70, 92
AclI AACGTT 1 cut(s) 227
AcsI RAATTY 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 6 cut(s) 146, 151, 194, 221, 289, 439
AloI GAACNNNNNNTCC 2 cut(s) 466, 498
AluBI AGCT 5 cut(s) 127, 160, 250, 313, 363
AluI AGCT 5 cut(s) 127, 160, 250, 313, 363
Alw26I GTCTC 1 cut(s) 515
AoxI GGCC 2 cut(s) 321, 529
ApaI GGGCCC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 313, 418
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 321, 322
BaeGI GKGCMC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 427
BbvI GCAGC 2 cut(s) 300, 405
BccI CCATC 1 cut(s) 454
BceAI ACGGC 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 314
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 314, 419
BlsI GCNGC 2 cut(s) 315, 420
BmgT120I GGNCC 2 cut(s) 321, 322
BmiI GGNNCC 2 cut(s) 322, 323
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 147, 526
BseRI GAGGAG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 2 cut(s) 300, 405
Bsh1236I CGCG 2 cut(s) 72, 94
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 323, 531
BsiEI CGRYCG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 515
BsnI GGCC 2 cut(s) 323, 531
Bsp120I GGGCCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 256, 454
BspACI CCGC 2 cut(s) 70, 92
BspANI GGCC 2 cut(s) 323, 531
BspCNI CTCAG 2 cut(s) 146, 525
BspFNI CGCG 2 cut(s) 72, 94
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 322, 323
BspMAI CTGCAG 1 cut(s) 318
BssMI GATC 2 cut(s) 256, 454
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 4 cut(s) 110, 133, 489, 512
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 2 cut(s) 72, 94
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 2 cut(s) 259, 457
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 2 cut(s) 256, 454
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 173, 360
BstSFI CTRYAG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 325
BstUI CGCG 2 cut(s) 72, 94
BstV1I GCAGC 2 cut(s) 300, 405
BstV2I GAAGAC 1 cut(s) 427
BsuRI GGCC 2 cut(s) 323, 531
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 278
Cac8I GCNNGC 1 cut(s) 401
CciI TCATGA 1 cut(s) 501
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 321, 322
CviAII CATG 3 cut(s) 5, 387, 502
DdeI CTNAG 4 cut(s) 110, 133, 489, 512
DpnI GATC 2 cut(s) 258, 456
DpnII GATC 2 cut(s) 256, 454
DraIII CACNNNGTG 1 cut(s) 27
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 325
FaeI CATG 3 cut(s) 8, 390, 505
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 3 cut(s) 4, 386, 501
FauNDI CATATG 1 cut(s) 518
FblI GTMKAC 2 cut(s) 78, 100
Fnu4HI GCNGC 2 cut(s) 314, 419
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 2 cut(s) 314, 419
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 243
GluI GCNGC 2 cut(s) 314, 419
HaeIII GGCC 2 cut(s) 323, 531
HhaI GCGC 1 cut(s) 244
Hin1II CATG 3 cut(s) 8, 390, 505
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 4 cut(s) 37, 57, 79, 101
HindII GTYRAC 4 cut(s) 37, 57, 79, 101
HindIII AAGCTT 1 cut(s) 125
HpaI GTTAAC 1 cut(s) 37
Hpy166II GTNNAC 4 cut(s) 37, 57, 79, 101
Hpy188I TCNGA 3 cut(s) 136, 265, 459
Hpy188III TCNNGA 4 cut(s) 43, 348, 471, 502
Hpy8I GTNNAC 4 cut(s) 37, 57, 79, 101
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 4, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 360
HpyF3I CTNAG 4 cut(s) 110, 133, 489, 512
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 3 cut(s) 8, 390, 505
HspAI GCGC 1 cut(s) 242
KspAI GTTAAC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 256, 454
LmnI GCTCC 4 cut(s) 165, 247, 297, 360
LpnPI CCDG 8 cut(s) 158, 170, 212, 230, 302, 361, 456, 498
Lsp1109I GCAGC 2 cut(s) 300, 405
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 227
MalI GATC 2 cut(s) 258, 456
MboI GATC 2 cut(s) 256, 454
MboII GAAGA 4 cut(s) 214, 217, 427, 535
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 5 cut(s) 141, 146, 266, 336, 480
MnlI CCTC 4 cut(s) 178, 288, 334, 521
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 6 cut(s) 17, 36, 210, 230, 335, 425
MvnI CGCG 2 cut(s) 72, 94
MwoI GCNNNNNNNGC 2 cut(s) 173, 360
NdeI CATATG 1 cut(s) 518
NdeII GATC 2 cut(s) 256, 454
NlaIII CATG 3 cut(s) 8, 390, 505
NlaIV GGNNCC 2 cut(s) 322, 323
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 501
PkrI GCNGC 2 cut(s) 315, 420
Psp1406I AACGTT 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 322, 323
PspOMI GGGCCC 1 cut(s) 321
PspPI GGNCC 2 cut(s) 321, 322
PstI CTGCAG 1 cut(s) 318
SalI GTCGAC 2 cut(s) 77, 99
SaqAI TTAA 6 cut(s) 17, 36, 210, 230, 335, 425
SatI GCNGC 2 cut(s) 314, 419
Sau3AI GATC 2 cut(s) 256, 454
Sau96I GGNCC 2 cut(s) 321, 322
SduI GDGCHC 1 cut(s) 325
SetI ASST 9 cut(s) 29, 129, 162, 230, 252, 315, 345, 365, 432
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 314
Sse9I AATT 5 cut(s) 141, 146, 266, 336, 480
SsiI CCGC 2 cut(s) 70, 92
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 230
TaqI TCGA 2 cut(s) 78, 100
TasI AATT 5 cut(s) 141, 146, 266, 336, 480
Tru1I TTAA 6 cut(s) 17, 36, 210, 230, 335, 425
Tru9I TTAA 6 cut(s) 17, 36, 210, 230, 335, 425
TscAI CASTG 2 cut(s) 183, 285
TseI GCWGC 2 cut(s) 313, 418
TspDTI ATGAA 3 cut(s) 21, 456, 490
TspRI CASTG 2 cut(s) 183, 285
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 2 cut(s) 78, 100
XspI CTAG 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.