Rroxscaffold_3G00272430

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004883
Physical Location & Seq
Forward (+)
64558054 .. 64561081
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272430.1

Sequence Viewer

Length: 570 bp
ATGAGCATTGTTCTTGTTCCCGCTCCCTCCATCTGCTATTTCCCGCTCCCTCCATCCAGTCCCGACAACGAAAATGAGAGAGCAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCAGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCATAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGTGAATATATTATTGATCTGATGGGTGCTTCTGGAACACTAATTCCTGCTAAGATGTGGTTCATGATGTGTCTCAGCGTATGGAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.37

Weight (kDa)

5.04

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 121 - 174 2.7e-15 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 23, 46
AciI CCGC 2 cut(s) 21, 44
AclI AACGTT 1 cut(s) 254
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 2 cut(s) 372, 430
AgsI TTSAA 5 cut(s) 173, 178, 221, 248, 316
AloI GAACNNNNNNTCC 2 cut(s) 505, 537
AluBI AGCT 7 cut(s) 154, 187, 277, 340, 377, 417, 443
AluI AGCT 7 cut(s) 154, 187, 277, 340, 377, 417, 443
Alw26I GTCTC 1 cut(s) 554
AoxI GGCC 1 cut(s) 348
ApaI GGGCCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 1 cut(s) 293
AspLEI GCGC 2 cut(s) 121, 271
AspS9I GGNCC 2 cut(s) 348, 349
BaeGI GKGCMC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 352
BbvI GCAGC 1 cut(s) 327
BccI CCATC 4 cut(s) 38, 61, 431, 493
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 341
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 348, 349
BmiI GGNNCC 2 cut(s) 349, 350
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 174, 565
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 350
BslFI GGGAC 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 350
Bsp120I GGGCCC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 2 cut(s) 283, 493
BspACI CCGC 2 cut(s) 21, 44
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 173, 564
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 349, 350
BspMAI CTGCAG 1 cut(s) 345
BsrBI CCGCTC 2 cut(s) 23, 46
BsrI ACTGG 1 cut(s) 57
BssMI GATC 2 cut(s) 283, 493
Bst6I CTCTTC 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 3 cut(s) 160, 528, 551
BstF5I GGATG 1 cut(s) 53
BstHHI GCGC 2 cut(s) 121, 271
BstKTI GATC 2 cut(s) 286, 496
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 2 cut(s) 283, 493
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 210, 305
Cac8I GCNNGC 1 cut(s) 123
CciI TCATGA 1 cut(s) 540
CfoI GCGC 2 cut(s) 121, 271
Cfr13I GGNCC 2 cut(s) 348, 349
Csp6I GTAC 2 cut(s) 371, 429
CviAII CATG 2 cut(s) 396, 541
CviQI GTAC 2 cut(s) 371, 429
DdeI CTNAG 3 cut(s) 160, 528, 551
DpnI GATC 2 cut(s) 285, 495
DpnII GATC 2 cut(s) 283, 493
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 352
FaeI CATG 2 cut(s) 399, 544
FaiI YATR 6 cut(s) 354, 397, 401, 486, 542, 559
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 395, 540
FauI CCCGC 2 cut(s) 28, 51
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 1 cut(s) 374
GlaI GCGC 2 cut(s) 120, 270
GluI GCNGC 1 cut(s) 341
HaeIII GGCC 1 cut(s) 350
HhaI GCGC 2 cut(s) 121, 271
Hin1II CATG 2 cut(s) 399, 544
Hin6I GCGC 2 cut(s) 119, 269
HinP1I GCGC 2 cut(s) 119, 269
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 5 cut(s) 91, 114, 163, 292, 498
Hpy188III TCNNGA 3 cut(s) 62, 510, 541
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 160, 528, 551
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 2 cut(s) 399, 544
HspAI GCGC 2 cut(s) 119, 269
Kzo9I GATC 2 cut(s) 283, 493
LmnI GCTCC 6 cut(s) 28, 51, 192, 274, 324, 440
Lsp1109I GCAGC 1 cut(s) 327
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 254
MalI GATC 2 cut(s) 285, 495
MbiI CCGCTC 2 cut(s) 23, 46
MboI GATC 2 cut(s) 283, 493
MboII GAAGA 4 cut(s) 109, 241, 244, 383
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 7 cut(s) 168, 173, 293, 363, 459, 471, 519
MnlI CCTC 6 cut(s) 37, 60, 205, 315, 361, 558
MseI TTAA 4 cut(s) 237, 257, 362, 456
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 2 cut(s) 283, 493
NlaIII CATG 2 cut(s) 399, 544
NlaIV GGNNCC 2 cut(s) 349, 350
PagI TCATGA 1 cut(s) 540
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 349, 350
PspOMI GGGCCC 1 cut(s) 348
PspPI GGNCC 2 cut(s) 348, 349
PstI CTGCAG 1 cut(s) 345
RsaI GTAC 2 cut(s) 372, 430
RsaNI GTAC 2 cut(s) 371, 429
SaqAI TTAA 4 cut(s) 237, 257, 362, 456
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 2 cut(s) 283, 493
Sau96I GGNCC 2 cut(s) 348, 349
SduI GDGCHC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 341
Sse9I AATT 7 cut(s) 168, 173, 293, 363, 459, 471, 519
SsiI CCGC 2 cut(s) 21, 44
SspMI CTAG 1 cut(s) 374
TaiI ACGT 1 cut(s) 257
TasI AATT 7 cut(s) 168, 173, 293, 363, 459, 471, 519
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 4 cut(s) 237, 257, 362, 456
Tru9I TTAA 4 cut(s) 237, 257, 362, 456
TscAI CASTG 2 cut(s) 210, 312
TseI GCWGC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 529
TspRI CASTG 2 cut(s) 210, 312
XapI RAATTY 1 cut(s) 293
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.