Rh2AG259700

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004883
Physical Location & Seq
Reverse (-)
29869279 .. 29873202
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG259700.1

Sequence Viewer

Length: 333 bp
ATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAACTGGAAGTGAATATATTATTGATCTGATGGGTGCTTCTGGAACACTAATTCCTGCTAAGGTACCTACTAGTCACCTCCCAAATTCTTTTTTTGCCATAAGGAGCTTTCAAGATCCCATAGAAATGTCTACGGAGATGCCCAAAGATTTGTGTTTACTACAAGCTGAACGAAAACAAAAAGTCTACAATTATGAGATTGATGAGCAGTTCATTTCATATCTAATTGCCTTTAGTGACAAACTCGTACTGCATCATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.31

Weight (kDa)

4.97

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 1 - 41 3.8e-08 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 133
AccI GTMKAC 2 cut(s) 200, 255
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 3 cut(s) 31, 135, 318
AgsI TTSAA 1 cut(s) 182
AhlI ACTAGT 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 106, 138
AluBI AGCT 4 cut(s) 18, 44, 177, 236
AluI AGCT 4 cut(s) 18, 44, 177, 236
AlwI GGATC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 154
Asp718I GGTACC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 133
BccI CCATC 2 cut(s) 32, 94
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 94, 184
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 79
BssMI GATC 2 cut(s) 94, 184
BstDEI CTNAG 1 cut(s) 129
BstKTI GATC 2 cut(s) 97, 187
BstMBI GATC 2 cut(s) 94, 184
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Csp6I GTAC 3 cut(s) 30, 134, 317
CviJI RGCY 4 cut(s) 18, 44, 177, 236
CviKI_1 RGCY 4 cut(s) 18, 44, 177, 236
CviQI GTAC 3 cut(s) 30, 134, 317
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 96, 186
DpnII GATC 2 cut(s) 94, 184
FaiI YATR 6 cut(s) 87, 170, 191, 264, 289, 327
FblI GTMKAC 2 cut(s) 200, 255
FspBI CTAG 1 cut(s) 141
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 4 cut(s) 49, 201, 227, 256
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 111, 182
Hpy8I GTNNAC 4 cut(s) 49, 201, 227, 256
HpyCH4V TGCA 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 129
KpnI GGTACC 1 cut(s) 137
Kzo9I GATC 2 cut(s) 94, 184
LmnI GCTCC 2 cut(s) 41, 174
LpnPI CCDG 3 cut(s) 60, 96, 138
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 143, 305
MalI GATC 2 cut(s) 96, 186
MboI GATC 2 cut(s) 94, 184
MflI RGATCY 1 cut(s) 184
MluCI AATT 5 cut(s) 60, 120, 154, 259, 294
MnlI CCTC 1 cut(s) 158
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 194
NdeII GATC 2 cut(s) 94, 184
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 143, 305
PspN4I GGNNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 3 cut(s) 31, 135, 318
RsaNI GTAC 3 cut(s) 30, 134, 317
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 2 cut(s) 94, 184
SetI ASST 8 cut(s) 16, 20, 46, 135, 139, 150, 179, 238
SfaNI GCATC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 194
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 5 cut(s) 60, 120, 154, 259, 294
SspMI CTAG 1 cut(s) 141
TasI AATT 5 cut(s) 60, 120, 154, 259, 294
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 2 cut(s) 143, 305
Tsp45I GTSAC 2 cut(s) 143, 305
TspDTI ATGAA 2 cut(s) 271, 276
TspGWI ACGGA 1 cut(s) 218
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 2 cut(s) 200, 255
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.