Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004883

Physical Location & Seq

Genomic Coordinates Reverse (-)

2098982 .. 2103898

Gene Structure 4917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG030500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAAAATATTTAATACAGTACAGTCCCGAGAACAATACCTCCGGCAGATTCTTTGTTACTCCAAAGTTGTTGTTCCTTTGACTGATACTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

EDR1 Pkinase_Tyr

Protein Analysis

68

Amino Acids

7.6

Weight (kDa)

7.74

Isoelectric Point (pI)

26.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR1_CTR1_ARMC3_pept	PF14381	32 - 64	6e-10	EDR1/CTR1/ARMC3, peptidase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004883)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426011 RchiOBHm_Chr5g0048351 RchiOBHm_Chr6g0274051
rosa_multiflora	Rmu_sc0001334.1_g000028 Rmu_sc0002563.1_g000054
rosa_roxburghii	Rroxscaffold_3G00221250 Rroxscaffold_3G00222960 Rroxscaffold_3G00272430
rosa_rugosa	Rorug02G0083800 Rorug02G0160000 Rorug05G0351600
rosa_samantha	Rh1AG405000 Rh2AG259700 Rh3AG030900 Rh3AG031200 Rh3BG031700 Rh3CG030500 Rh3DG031100 Rh3DG031400 Rh4AG058600 Rh4BG057400 Rh4BG113000 Rh5AG212400 Rh5AG317000 Rh5AG447100 Rh5AG447200 Rh5AG542200 Rh5CG299800 Rh6CG198100 Rh6DG189600 Rh7AG437200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	21, 96, 154
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
AluBI	AGCT	3 cut(s)	101, 141, 167
AluI	AGCT	3 cut(s)	101, 141, 167
Ama87I	CYCGRG	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	27
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BccI	CCATC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
BseMII	CTCAG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	19, 24
BstDEI	CTNAG	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	20, 95, 153
CviAII	CATG	1 cut(s)	120
CviJI	RGCY	3 cut(s)	101, 141, 167
CviKI_1	RGCY	3 cut(s)	101, 141, 167
CviQI	GTAC	3 cut(s)	20, 95, 153
DdeI	CTNAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	27
FaeI	CATG	1 cut(s)	123
FaiI	YATR	2 cut(s)	121, 125
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	1 cut(s)	119
FspBI	CTAG	1 cut(s)	98
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	1 cut(s)	123
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	2 cut(s)	19, 24
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	2 cut(s)	56, 113
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	56
MboII	GAAGA	1 cut(s)	107
MluCI	AATT	2 cut(s)	183, 195
MnlI	CCTC	2 cut(s)	50, 85
MseI	TTAA	2 cut(s)	12, 180
MspI	CCGG	1 cut(s)	43
NlaIII	CATG	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	49
RsaI	GTAC	3 cut(s)	21, 96, 154
RsaNI	GTAC	3 cut(s)	20, 95, 153
SaqAI	TTAA	2 cut(s)	12, 180
SetI	ASST	7 cut(s)	42, 96, 103, 139, 143, 169, 206
SgeI	CNNG	9 cut(s)	39, 41, 55, 110, 132, 140, 160, 162, 187
Sse9I	AATT	2 cut(s)	183, 195
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	19, 24
TasI	AATT	2 cut(s)	183, 195
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	12, 180
Tru9I	TTAA	2 cut(s)	12, 180
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.